Rh6AG210700

tRNA-splicing endonuclease subunit

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
37535022 .. 37538181
3160 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG210700.1

Sequence Viewer

Length: 1632 bp
ATGTCAAAGATAGTACTGCAGCTTCAGTCTTCTCTAATCGGATTGAGTTCTCGAGGGTTTCTATGTGGGAGCAGCGTGCTTGTTGAAGTGATAGCAGAACAAGCTAATCTTCTTGAATCTGCTTGCTTTGGTGTTAGAGTGATGGAGAATAAGCACTGGTTTCAGTTGTGTATGGAAGAGGCCTTTTACCTATGCCATTCTCTAAAATGCCTCGAGATAGTTGAAGATAAGTGCTCCAAGAATGATAACCAGATATGGAAGTGCATGGAATCCAGAAGAGCATCGTTCCCCTATTTGTACAAGGCTTATTCTCATCTTAGAATGAAAAACTGGGTTGTCAGGTCAGGAGTTAAATATGGTGTGGACTTTGTTGCCTACCGCCATCATCCAGCTCTAGTTCACTCTGAATATGCTGTGATTGTATTGTCAGAGGAACATAGTGATGGAAATAAGCGACTGACGGAGTGGTTAGATATTCATTGTACTACTCGTCTTTGTGGAGGTGTTGCAAAGACATTGTTAGTTCTTTATATCAGCAGAAATGGTCATAGTGTGGACTCCCAATCATGTCTGGAGAGATGTACTGTTGAAGAGCGTACAGTCACAAGATGGAAGCCAGAACAATGCCGTGATGATGATAGATTAGTTGAAAGTGAGAACGGAACCAAATTGAAGCAATTTGGTGCCAATATATTCTCCTGCTGTACTCACTCTACTGGCTCAGAACCTCATGACAGAGATGATTCTGAACATATCTTGAATGATGATGAGCTCTCTCTCAACACTATGGCAGACGATGGAAGGGATGAGGAGGTAGCTGAAAAATTAATGATTATGCATGAAGAATGTTTAGATGAAGAGTATACCAATGACTATGATGAAGAAGAAGAAGAAGAAGAAGAGGAAAACCACTATGCTTCTTGTGCCACATCCAAGATGCAACCCAGGAGGTCTAGTGTATCCAAGGCTTACTGGGATGATGAGATGGGCATGGCTATCGTATTTCCAAAGGGTAGAATTTGGAGGACCATGGGAATCTCTCGTAATGGCAAGCTCTATATCTCCATTGAGGAAGTTTTGTATTTGGTTGAAATAGGGGCTTTGCTTCTCTTGGATGGTAGTGATACTAGTATTTCCTTGGAAGATATATATATGAAGGTTTCAGATGGAAAGAATGAGTTCTTGTTGGAGGAATTTAGAGCTTATAGGCAACTCAGATACCTTGGTTACATTGTTGCGAGACATGGTATTCCTTGGTCTAGGAAGGGTGTCAAGACAAATTGTGAATCTGTTTCTTCTCAAGTTTGTCCTGAAGCTGAAGAGATTAGGTCTGTCAATGGATTGTTCAATGGGATACAGATTAATGAAGTGAGGGCAGTTTTTGATATTTATCTTCCAAACAGCAAGTTCAAGAAATCCTCTCCCGGTGATCCAAATTTTGTGCTCTGTTTTACTAGGGGCCATCCACCTTCCAAACCAGACCTTGAAGCCCTTGAGAGACAATTTGGTAGCACTCCTTTGAAGTTTTGTCATGTGGAGGAAGATTGTGTGAGTTTCTATTCCTTTGACAAAGTGGAACTTCATGTCGTCTCATGTCATCTGCAAAAATTTCGACATCCCTCTCTAAACTAA

Protein Analysis

543

Amino Acids

62.28

Weight (kDa)

5.3

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_int_endo_N PF02778 18 - 82 1.2e-08 tRNA intron endonuclease, N-terminal domain
tRNA_int_endo PF01974 99 - 182 9.3e-18 tRNA intron endonuclease, catalytic C-terminal domain
tRNA_int_end_N2 PF12928 316 - 370 4.5e-14 tRNA-splicing endonuclease subunit sen54 N-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 683
AccI GTMKAC 1 cut(s) 863
AciI CCGC 1 cut(s) 379
AclWI GGATC 1 cut(s) 1424
AcsI RAATTY 4 cut(s) 1017, 1193, 1435, 1607
AcuI CTGAAG 3 cut(s) 8, 1332, 1338
AfaI GTAC 6 cut(s) 15, 299, 484, 583, 598, 706
AhlI ACTAGT 1 cut(s) 1127
AjnI CCWGG 1 cut(s) 944
AluBI AGCT 8 cut(s) 22, 104, 392, 772, 818, 1054, 1202, 1316
AluI AGCT 8 cut(s) 22, 104, 392, 772, 818, 1054, 1202, 1316
Alw21I GWGCWC 3 cut(s) 236, 774, 1446
Alw26I GTCTC 3 cut(s) 1234, 1492, 1594
AlwI GGATC 1 cut(s) 1424
Ama87I CYCGRG 2 cut(s) 51, 212
AoxI GGCC 2 cut(s) 180, 1459
ApeKI GCWGC 2 cut(s) 19, 72
ApoI RAATTY 4 cut(s) 1017, 1193, 1435, 1607
AseI ATTAAT 2 cut(s) 827, 1362
Asp700I GAANNNNTTC 1 cut(s) 1178
AspS9I GGNCC 2 cut(s) 1026, 1459
AsuC2I CCSGG 1 cut(s) 1425
AsuHPI GGTGA 1 cut(s) 1439
AvaI CYCGRG 2 cut(s) 51, 212
AvaII GGWCC 1 cut(s) 1026
BaeI ACNNNNGTAYC 2 cut(s) 1210, 1243
BanI GGYRCC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 774
BarI GAAGNNNNNNTAC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 3 cut(s) 236, 774, 1446
BbvI GCAGC 2 cut(s) 31, 84
BccI CCATC 9 cut(s) 136, 390, 437, 603, 791, 979, 1109, 1160, 1470
BceAI ACGGC 1 cut(s) 612
BcgI CGANNNNNNTGC 4 cut(s) 979, 1013, 1592, 1626
BciT130I CCWGG 1 cut(s) 946
BciVI GTATCC 2 cut(s) 970, 1347
BcnI CCSGG 1 cut(s) 1425
BcoDI GTCTC 3 cut(s) 1234, 1492, 1594
BcuI ACTAGT 1 cut(s) 1127
BfaI CTAG 5 cut(s) 395, 954, 1128, 1260, 1455
BfmI CTRYAG 1 cut(s) 17
BfuI GTATCC 2 cut(s) 970, 1347
BisI GCNGC 2 cut(s) 20, 73
BlsI GCNGC 2 cut(s) 21, 74
BmcAI AGTACT 1 cut(s) 15
Bme1390I CCNGG 2 cut(s) 946, 1425
Bme18I GGWCC 1 cut(s) 1026
BmeT110I CYCGRG 2 cut(s) 51, 212
BmgT120I GGNCC 2 cut(s) 1026, 1459
BmiI GGNNCC 3 cut(s) 664, 685, 1460
BmrFI CCNGG 2 cut(s) 946, 1425
BmrI ACTGGG 2 cut(s) 340, 982
BmsI GCATC 2 cut(s) 290, 927
BmuI ACTGGG 2 cut(s) 340, 982
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 593
BpuEI CTTGAG 2 cut(s) 1284, 1514
BpuMI CCSGG 1 cut(s) 1425
BsaBI GATNNNNATC 1 cut(s) 1389
BsaJI CCNNGG 6 cut(s) 944, 963, 1029, 1137, 1222, 1253
BsaXI ACNNNNNCTCC 2 cut(s) 940, 970
Bse1I ACTGG 4 cut(s) 161, 335, 721, 977
Bse8I GATNNNNATC 1 cut(s) 1389
BseBI CCWGG 1 cut(s) 946
BseDI CCNNGG 6 cut(s) 944, 963, 1029, 1137, 1222, 1253
BseGI GGATG 7 cut(s) 385, 811, 929, 982, 1120, 1462, 1615
BseJI GATNNNNATC 1 cut(s) 1389
BseMII CTCAG 2 cut(s) 735, 1228
BseNI ACTGG 4 cut(s) 161, 335, 721, 977
BseRI GAGGAG 1 cut(s) 824
BseXI GCAGC 2 cut(s) 31, 84
BshFI GGCC 2 cut(s) 182, 1461
BshNI GGYRCC 1 cut(s) 683
BsiHKAI GWGCWC 3 cut(s) 236, 774, 1446
BsiHKCI CYCGRG 2 cut(s) 51, 212
BsiSI CCGG 1 cut(s) 1425
BsmAI GTCTC 3 cut(s) 1234, 1492, 1594
BsmBI CGTCTC 1 cut(s) 1594
BsnI GGCC 2 cut(s) 182, 1461
BsoBI CYCGRG 2 cut(s) 51, 212
Bsp1286I GDGCHC 3 cut(s) 236, 774, 1446
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 1 cut(s) 1429
Bsp19I CCATGG 1 cut(s) 1029
BspACI CCGC 1 cut(s) 379
BspANI GGCC 2 cut(s) 182, 1461
BspCNI CTCAG 2 cut(s) 734, 1227
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 3 cut(s) 664, 685, 1460
BspMAI CTGCAG 1 cut(s) 21
BspPI GGATC 1 cut(s) 1424
BspQI GCTCTTC 2 cut(s) 271, 585
BspT107I GGYRCC 1 cut(s) 683
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 4 cut(s) 161, 335, 721, 977
BssECI CCNNGG 6 cut(s) 944, 963, 1029, 1137, 1222, 1253
BssMI GATC 1 cut(s) 1429
BssNAI GTATAC 1 cut(s) 864
BssT1I CCWWGG 5 cut(s) 963, 1029, 1137, 1222, 1253
Bst1107I GTATAC 1 cut(s) 864
Bst2UI CCWGG 1 cut(s) 946
Bst4CI ACNGT 2 cut(s) 586, 601
Bst6I CTCTTC 6 cut(s) 171, 271, 585, 852, 894, 1314
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 3 cut(s) 77, 124, 1052
BstDEI CTNAG 3 cut(s) 317, 721, 1214
BstDSI CCRYGG 1 cut(s) 1029
BstF5I GGATG 7 cut(s) 385, 811, 929, 982, 1120, 1462, 1615
BstKTI GATC 1 cut(s) 1432
BstMAI GTCTC 3 cut(s) 1234, 1492, 1594
BstMBI GATC 1 cut(s) 1429
BstMWI GCNNNNNNNGC 2 cut(s) 101, 923
BstNI CCWGG 1 cut(s) 946
BstSCI CCNGG 2 cut(s) 944, 1423
BstSFI CTRYAG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 31, 84
BstV2I GAAGAC 1 cut(s) 21
BstZ17I GTATAC 1 cut(s) 864
BsuI GTATCC 2 cut(s) 970, 1347
BsuRI GGCC 2 cut(s) 182, 1461
BtgI CCRYGG 1 cut(s) 1029
BtsCI GGATG 7 cut(s) 385, 811, 929, 982, 1120, 1462, 1615
BtsIMutI CAGTG 1 cut(s) 154
Cac8I GCNNGC 3 cut(s) 77, 124, 1052
CciI TCATGA 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 1026, 1459
Csp6I GTAC 6 cut(s) 14, 298, 483, 582, 597, 705
CviQI GTAC 6 cut(s) 14, 298, 483, 582, 597, 705
DdeI CTNAG 3 cut(s) 317, 721, 1214
DpnI GATC 1 cut(s) 1431
DpnII GATC 1 cut(s) 1429
Eam1104I CTCTTC 6 cut(s) 171, 271, 585, 852, 894, 1314
EarI CTCTTC 6 cut(s) 171, 271, 585, 852, 894, 1314
Ecl136II GAGCTC 1 cut(s) 772
Eco130I CCWWGG 5 cut(s) 963, 1029, 1137, 1222, 1253
Eco147I AGGCCT 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 774
Eco47I GGWCC 1 cut(s) 1026
Eco53kI GAGCTC 1 cut(s) 772
Eco57I CTGAAG 3 cut(s) 8, 1332, 1338
Eco88I CYCGRG 2 cut(s) 51, 212
EcoICRI GAGCTC 1 cut(s) 772
EcoRII CCWGG 1 cut(s) 944
EcoT14I CCWWGG 5 cut(s) 963, 1029, 1137, 1222, 1253
EcoT22I ATGCAT 1 cut(s) 840
EcoT38I GRGCYC 1 cut(s) 774
ErhI CCWWGG 5 cut(s) 963, 1029, 1137, 1222, 1253
Esp3I CGTCTC 1 cut(s) 1594
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 1563, 1595
FblI GTMKAC 1 cut(s) 863
Fnu4HI GCNGC 2 cut(s) 20, 73
FokI GGATG 7 cut(s) 372, 818, 916, 989, 1127, 1449, 1602
FriOI GRGCYC 1 cut(s) 774
Fsp4HI GCNGC 2 cut(s) 20, 73
FspBI CTAG 5 cut(s) 395, 954, 1128, 1260, 1455
GluI GCNGC 2 cut(s) 20, 73
GsuI CTGGAG 1 cut(s) 593
HaeIII GGCC 2 cut(s) 182, 1461
HapII CCGG 1 cut(s) 1425
HinfI GANTC 6 cut(s) 116, 269, 557, 743, 1035, 1286
HpaII CCGG 1 cut(s) 1425
HphI GGTGA 1 cut(s) 1439
Hpy166II GTNNAC 4 cut(s) 364, 400, 556, 864
Hpy188I TCNGA 7 cut(s) 41, 406, 430, 724, 748, 1165, 1217
Hpy8I GTNNAC 4 cut(s) 364, 400, 556, 864
HpyAV CCTTC 4 cut(s) 795, 1150, 1258, 1479
HpyCH4III ACNGT 2 cut(s) 586, 601
HpyCH4V TGCA 6 cut(s) 19, 264, 509, 838, 940, 1603
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 923
HpyF3I CTNAG 3 cut(s) 317, 721, 1214
Kzo9I GATC 1 cut(s) 1429
LguI GCTCTTC 2 cut(s) 271, 585
LmnI GCTCC 2 cut(s) 69, 239
Lsp1109I GCAGC 2 cut(s) 31, 84
LweI GCATC 2 cut(s) 290, 927
MaeI CTAG 5 cut(s) 395, 954, 1128, 1260, 1455
MaeIII GTNAC 2 cut(s) 601, 1226
MalI GATC 1 cut(s) 1431
MboI GATC 1 cut(s) 1429
MhlI GDGCHC 3 cut(s) 236, 774, 1446
MluCI AATT 9 cut(s) 668, 677, 824, 1017, 1193, 1279, 1435, 1502, 1607
MlyI GAGTC 1 cut(s) 551
MmeI TCCRAC 1 cut(s) 1167
Mph1103I ATGCAT 1 cut(s) 840
MroXI GAANNNNTTC 1 cut(s) 1178
MseI TTAA 3 cut(s) 351, 827, 1362
MslI CAYNNNNRTG 1 cut(s) 441
MspI CCGG 1 cut(s) 1425
MspR9I CCNGG 2 cut(s) 946, 1425
MvaI CCWGG 1 cut(s) 946
MwoI GCNNNNNNNGC 2 cut(s) 101, 923
NciI CCSGG 1 cut(s) 1425
NcoI CCATGG 1 cut(s) 1029
NdeII GATC 1 cut(s) 1429
NlaIV GGNNCC 3 cut(s) 664, 685, 1460
NmuCI GTSAC 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 840
PaeR7I CTCGAG 2 cut(s) 51, 212
PagI TCATGA 1 cut(s) 730
PceI AGGCCT 1 cut(s) 182
PciSI GCTCTTC 2 cut(s) 271, 585
PdmI GAANNNNTTC 1 cut(s) 1178
PfeI GAWTC 5 cut(s) 116, 269, 743, 1035, 1286
PkrI GCNGC 2 cut(s) 21, 74
PleI GAGTC 1 cut(s) 551
PpsI GAGTC 1 cut(s) 551
PshBI ATTAAT 2 cut(s) 827, 1362
Psp124BI GAGCTC 1 cut(s) 774
Psp6I CCWGG 1 cut(s) 944
PspGI CCWGG 1 cut(s) 944
PspN4I GGNNCC 3 cut(s) 664, 685, 1460
PspPI GGNCC 2 cut(s) 1026, 1459
PstI CTGCAG 1 cut(s) 21
RsaI GTAC 6 cut(s) 15, 299, 484, 583, 598, 706
RsaNI GTAC 6 cut(s) 14, 298, 483, 582, 597, 705
RseI CAYNNNNRTG 1 cut(s) 441
SacI GAGCTC 1 cut(s) 774
SapI GCTCTTC 2 cut(s) 271, 585
SaqAI TTAA 3 cut(s) 351, 827, 1362
SatI GCNGC 2 cut(s) 20, 73
Sau3AI GATC 1 cut(s) 1429
Sau96I GGNCC 2 cut(s) 1026, 1459
ScaI AGTACT 1 cut(s) 15
SchI GAGTC 1 cut(s) 551
ScrFI CCNGG 2 cut(s) 946, 1425
SduI GDGCHC 3 cut(s) 236, 774, 1446
SfaNI GCATC 2 cut(s) 290, 927
SfcI CTRYAG 1 cut(s) 17
Sfr274I CTCGAG 2 cut(s) 51, 212
SinI GGWCC 1 cut(s) 1026
SlaI CTCGAG 2 cut(s) 51, 212
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 4 cut(s) 51, 212, 1299, 1493
SmoI CTYRAG 4 cut(s) 51, 212, 1299, 1493
SpeI ACTAGT 1 cut(s) 1127
Sse9I AATT 9 cut(s) 668, 677, 824, 1017, 1193, 1279, 1435, 1502, 1607
SseBI AGGCCT 1 cut(s) 182
SsiI CCGC 1 cut(s) 379
SspMI CTAG 5 cut(s) 395, 954, 1128, 1260, 1455
SstI GAGCTC 1 cut(s) 774
StuI AGGCCT 1 cut(s) 182
StyD4I CCNGG 2 cut(s) 944, 1423
StyI CCWWGG 5 cut(s) 963, 1029, 1137, 1222, 1253
TaaI ACNGT 2 cut(s) 586, 601
TaqI TCGA 3 cut(s) 52, 213, 1612
TasI AATT 9 cut(s) 668, 677, 824, 1017, 1193, 1279, 1435, 1502, 1607
TatI WGTACW 5 cut(s) 13, 297, 482, 581, 704
TfiI GAWTC 5 cut(s) 116, 269, 743, 1035, 1286
Tru1I TTAA 3 cut(s) 351, 827, 1362
Tru9I TTAA 3 cut(s) 351, 827, 1362
TscAI CASTG 1 cut(s) 161
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 2 cut(s) 19, 72
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 8 cut(s) 338, 467, 855, 870, 894, 1169, 1380, 1571
TspGWI ACGGA 2 cut(s) 476, 675
TspRI CASTG 1 cut(s) 161
VpaK11BI GGWCC 1 cut(s) 1026
VspI ATTAAT 2 cut(s) 827, 1362
XapI RAATTY 4 cut(s) 1017, 1193, 1435, 1607
XhoI CTCGAG 2 cut(s) 51, 212
XmiI GTMKAC 1 cut(s) 863
XmnI GAANNNNTTC 1 cut(s) 1178
XspI CTAG 5 cut(s) 395, 954, 1128, 1260, 1455
ZrmI AGTACT 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.