Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003092

Physical Location & Seq

Genomic Coordinates Reverse (-)

13184515 .. 13188400

Gene Structure 3886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0098900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGAGGAGAATAGCCGAGAATGGTGGTATCAAGGAAGAGAGACCTTCTTTCTTCAAGGTCATTCTTCCCGGTTACAACACTGAACAGTTGAGGATTCCACCGCATTTCCTAGAGCATGGTAGAAATGACCAACCTGAAAGGGCAACCTTGACATGGAACATGTCTTTAGAGCGTTCGTGGACTGTCAAAGTGTGTAGAACAAAAGAAGGTGTGTATTTCAAGGATGGGTGGCGGGATTTTTTAAATGATAACTCAGTGAAGGAAGGTGACTTCCTAGTGTTCACCTATGAAGGAGATATGCATTTCAGCATACGTGATTACGAAAATAATTGTTGCAAGAGAGGCGATTTTCCTACTAATAATGAACCACACGAAGAATCCGCCCCTGCTAAGAGTACTAAAAGGAATCCTGGTTGTCCAAAGAAAGATTATTCAGCTGAATCTTTCCGGTCCAAGTTTCCTCATTACACAAGATCTATCAAGAAAAAATATTGTGTGTACTCAATTCCCACAGCCTTCTATAGGAAGCATCTTTCTGCAGGAAACTATGAAGTTGCTTTCCTGAAGATTTCAGGGGGAACCAAATGGTTCAAAGTGAAGCTTGTCCCTTCCCTTCAAACAGCCTTCATGTCTAAAGGGTGGTCTGTGTTTGCGCATGATAACCAAATCGTGGTTGGAGATGTTTGCGCTTTCGAGCTTGTGAAAGAGAACAAAATGGTGGTTCACATTCTCCGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

247

Amino Acids

28.68

Weight (kDa)

9.32

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	18 - 104	3.7e-18	B3 DNA binding domain
B3	PF02362	163 - 247	1.7e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45577 AT3G45590 AT3G45590 AT5G60230 AT5G60230
fragaria_vesca	FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101
rosa_chinensis	RchiOBHm_Chr6g0276201
rosa_laevigata	RLG00000013409 RLG00000025847
rosa_multiflora	Rmu_sc0002063.1_g000007 Rmu_sc0004048.1_g000016 Rmu_sc0008839.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125430 Rroxscaffold_7G00192490
rosa_rugosa	Rorug06G0098800 Rorug06G0098900 Rorug06G0098900 Rorug06G0099000 Rorug06G0099100 Rorug06G0099200 Rorug06G0099300 Rorug06G0124300
rosa_samantha	Rh1AG171200 Rh3BG017000 Rh3DG017300 Rh5BG538000 Rh5CG561900 Rh6AG210700 Rh6BG214900 Rh6DG207200
rosa_wichuraiana	Rw6G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	657
AccB7I	CCANNNNNTGG	1 cut(s)	673
AccIII	TCCGGA	1 cut(s)	735
AciI	CCGC	3 cut(s)	104, 235, 384
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	400, 503
AfiI	CCNNNNNNNGG	3 cut(s)	156, 525, 673
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	4 cut(s)	58, 223, 595, 620
AjnI	CCWGG	1 cut(s)	412
AluBI	AGCT	3 cut(s)	440, 604, 700
AluI	AGCT	3 cut(s)	440, 604, 700
Alw26I	GTCTC	1 cut(s)	37
Aor13HI	TCCGGA	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	658, 692
AspS9I	GGNCC	1 cut(s)	453
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	277, 281
AvaII	GGWCC	1 cut(s)	453
BccI	CCATC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	2 cut(s)	113, 278
BfmI	CTRYAG	2 cut(s)	523, 540
BglII	AGATCT	1 cut(s)	476
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	2 cut(s)	72, 414
Bme18I	GGWCC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	2 cut(s)	72, 414
BmsI	GCATC	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	317
BsaI	GGTCTC	1 cut(s)	37
BsaWI	WCCGGW	2 cut(s)	450, 735
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 525, 673
BseAI	TCCGGA	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	3 cut(s)	156, 525, 673
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	72, 451, 736
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	3 cut(s)	156, 525, 673
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	593
Bso31I	GGTCTC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	735
Bsp143I	GATC	1 cut(s)	476
BspACI	CCGC	3 cut(s)	104, 235, 384
BspCNI	CTCAG	1 cut(s)	269
BspEI	TCCGGA	1 cut(s)	735
BspLI	GGNNCC	1 cut(s)	583
BspMAI	CTGCAG	1 cut(s)	544
BspTNI	GGTCTC	1 cut(s)	37
BssMI	GATC	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	90, 187
Bst6I	CTCTTC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	317
BstDEI	CTNAG	2 cut(s)	256, 393
BstENI	CCTNNNNNAGG	1 cut(s)	523
BstF5I	GGATG	1 cut(s)	232
BstHHI	GCGC	2 cut(s)	658, 692
BstKTI	GATC	1 cut(s)	479
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	476
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	166
BstSCI	CCNGG	2 cut(s)	70, 412
BstSFI	CTRYAG	2 cut(s)	523, 540
BstX2I	RGATCY	1 cut(s)	476
BstYI	RGATCY	1 cut(s)	476
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	81, 264
CfoI	GCGC	2 cut(s)	658, 692
Cfr13I	GGNCC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	399, 502
CviAII	CATG	5 cut(s)	119, 156, 163, 631, 659
CviJI	RGCY	6 cut(s)	17, 440, 518, 604, 626, 700
CviKI_1	RGCY	6 cut(s)	17, 440, 518, 604, 626, 700
CviQI	GTAC	2 cut(s)	399, 502
DdeI	CTNAG	2 cut(s)	256, 393
DpnI	GATC	1 cut(s)	478
DpnII	GATC	1 cut(s)	476
DraI	TTTAAA	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	373
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	453
Eco57I	CTGAAG	1 cut(s)	587
EcoNI	CCTNNNNNAGG	1 cut(s)	523
EcoRII	CCWGG	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	306
FaeI	CATG	5 cut(s)	122, 159, 166, 634, 662
FalI	AAGNNNNNCTT	2 cut(s)	588, 620
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	5 cut(s)	118, 155, 162, 630, 658
FauI	CCCGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	239
FspBI	CTAG	2 cut(s)	113, 278
FspI	TGCGCA	1 cut(s)	657
GlaI	GCGC	2 cut(s)	657, 691
HapII	CCGG	3 cut(s)	72, 451, 736
HhaI	GCGC	2 cut(s)	658, 692
Hin1II	CATG	5 cut(s)	122, 159, 166, 634, 662
Hin6I	GCGC	2 cut(s)	656, 690
HinP1I	GCGC	2 cut(s)	656, 690
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	4 cut(s)	97, 380, 409, 443
HpaII	CCGG	3 cut(s)	72, 451, 736
HphI	GGTGA	2 cut(s)	277, 281
Hpy166II	GTNNAC	4 cut(s)	183, 285, 502, 727
Hpy188III	TCNNGA	3 cut(s)	484, 565, 736
Hpy8I	GTNNAC	4 cut(s)	183, 285, 502, 727
HpyAV	CCTTC	9 cut(s)	57, 203, 256, 260, 287, 529, 621, 626, 637
HpyCH4III	ACNGT	2 cut(s)	90, 187
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	304, 339, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	2 cut(s)	256, 393
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	5 cut(s)	122, 159, 166, 634, 662
HspAI	GCGC	2 cut(s)	656, 690
Kpn2I	TCCGGA	1 cut(s)	735
Kzo9I	GATC	1 cut(s)	476
LpnPI	CCDG	9 cut(s)	85, 150, 399, 402, 426, 464, 528, 561, 578
LweI	GCATC	1 cut(s)	541
MaeI	CTAG	2 cut(s)	113, 278
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	2 cut(s)	74, 269
MalI	GATC	1 cut(s)	478
MboI	GATC	1 cut(s)	476
MboII	GAAGA	5 cut(s)	46, 50, 59, 389, 580
MflI	RGATCY	1 cut(s)	476
MluCI	AATT	2 cut(s)	331, 507
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	3 cut(s)	87, 338, 474
Mph1103I	ATGCAT	1 cut(s)	306
MroI	TCCGGA	1 cut(s)	735
MseI	TTAA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	3 cut(s)	72, 451, 736
MspR9I	CCNGG	2 cut(s)	72, 414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	476
NlaIII	CATG	5 cut(s)	122, 159, 166, 634, 662
NlaIV	GGNNCC	1 cut(s)	583
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	269
NsbI	TGCGCA	1 cut(s)	657
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	166
PciI	ACATGT	1 cut(s)	162
PfeI	GAWTC	4 cut(s)	97, 380, 409, 443
PflMI	CCANNNNNTGG	1 cut(s)	673
Ppu21I	YACGTR	1 cut(s)	317
PscI	ACATGT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	453
PstI	CTGCAG	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	400, 503
RsaNI	GTAC	2 cut(s)	399, 502
SaqAI	TTAA	1 cut(s)	245
Sau3AI	GATC	1 cut(s)	476
Sau96I	GGNCC	1 cut(s)	453
ScaI	AGTACT	1 cut(s)	400
ScrFI	CCNGG	2 cut(s)	72, 414
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	2 cut(s)	523, 540
SinI	GGWCC	1 cut(s)	453
Sse9I	AATT	2 cut(s)	331, 507
SsiI	CCGC	3 cut(s)	104, 235, 384
SspI	AATATT	1 cut(s)	494
SspMI	CTAG	2 cut(s)	113, 278
StyD4I	CCNGG	2 cut(s)	70, 412
TaaI	ACNGT	2 cut(s)	90, 187
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	696
TasI	AATT	2 cut(s)	331, 507
TatI	WGTACW	2 cut(s)	398, 501
TfiI	GAWTC	4 cut(s)	97, 380, 409, 443
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	2 cut(s)	88, 264
TseFI	GTSAC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	306, 381, 567, 619
TspRI	CASTG	2 cut(s)	88, 264
Van91I	CCANNNNNTGG	1 cut(s)	673
VpaK11BI	GGWCC	1 cut(s)	453
XagI	CCTNNNNNAGG	1 cut(s)	523
XceI	RCATGY	1 cut(s)	166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	674
XspI	CTAG	2 cut(s)	113, 278
ZrmI	AGTACT	1 cut(s)	400
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.