Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004048.1

Orthogroup ID

OG0003092

Physical Location & Seq

Genomic Coordinates Forward (+)

60539 .. 61269

Gene Structure 731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004048.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 632 bp

ctggcgcgcacccttctcactcagccgccgtcgccctctccttccaccactgcgaatctaatggggcctaggtggaaaggaaatagctctgaagctaaatctcggtctaaagcgaaagctcttgcacaacccatgtcaaagatagtactgcagcttcagtcttctctgactggatcgagttctcgagggttcctatgtgggagcagtgtgcttgttgaagtgatagcagaacaagctaatcttctcgaatctgcctgcttcggtgttagactgatggagaataagcaatggtttcagttgtgtgtggaagaggccttttacctatgccattctctaaaatgcctcatgatagttgaagataagtgctccaagaatggtaaccagctatggaagtgcatggaatccagaaaagcatcgttcccctatttgtacaaggcttattctcatcttagaatgaaaaattgggttgtcaggtcaggagttaaatatggtgtggactttgttgcctaccgccatcatccagctctagttcactctgaatatgctgtgattgtattgtcagaggaacatggttatggaaataagcgactgacagagtggttagatattcattgtactactcgtctttgtgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

211

Amino Acids

23.72

Weight (kDa)

9.23

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45577 AT3G45590 AT3G45590 AT5G60230 AT5G60230
fragaria_vesca	FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101
rosa_chinensis	RchiOBHm_Chr6g0276201
rosa_laevigata	RLG00000013409 RLG00000025847
rosa_multiflora	Rmu_sc0002063.1_g000007 Rmu_sc0004048.1_g000016 Rmu_sc0008839.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125430 Rroxscaffold_7G00192490
rosa_rugosa	Rorug06G0098800 Rorug06G0098900 Rorug06G0098900 Rorug06G0099000 Rorug06G0099100 Rorug06G0099200 Rorug06G0099300 Rorug06G0124300
rosa_samantha	Rh1AG171200 Rh3BG017000 Rh3DG017300 Rh5BG538000 Rh5CG561900 Rh6AG210700 Rh6BG214900 Rh6DG207200
rosa_wichuraiana	Rw6G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	7
AciI	CCGC	2 cut(s)	26, 511
AclWI	GGATC	1 cut(s)	181
AcuI	CTGAAG	2 cut(s)	111, 140
AfaI	GTAC	3 cut(s)	147, 431, 616
AgsI	TTSAA	2 cut(s)	218, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
AluBI	AGCT	7 cut(s)	87, 95, 119, 154, 236, 385, 524
AluI	AGCT	7 cut(s)	87, 95, 119, 154, 236, 385, 524
Alw21I	GWGCWC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	181
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	2 cut(s)	65, 312
ApeKI	GCWGC	1 cut(s)	151
AspA2I	CCTAGG	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	7, 9
AspS9I	GGNCC	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	183
AvrII	CCTAGG	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	138, 170
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	268, 522
BceAI	ACGGC	1 cut(s)	13
BfaI	CTAG	2 cut(s)	69, 527
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	2 cut(s)	26, 152
BlnI	CCTAGG	1 cut(s)	68
BlsI	GCNGC	2 cut(s)	27, 153
BmcAI	AGTACT	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	66, 191
BmsI	GCATC	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	517
BseMI	GCAATG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	175
BsePI	GCGCGC	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	7
BshFI	GGCC	2 cut(s)	67, 314
BsiHKAI	GWGCWC	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	183
BsnI	GGCC	2 cut(s)	67, 314
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	173
BspACI	CCGC	2 cut(s)	26, 511
BspANI	GGCC	2 cut(s)	67, 314
BspCNI	CTCAG	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	66, 191
BspMAI	CTGCAG	1 cut(s)	153
BspPI	GGATC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	293
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	68
BssHII	GCGCGC	1 cut(s)	5
BssMI	GATC	1 cut(s)	173
BssT1I	CCWWGG	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	303
BstAUI	TGTACA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	7, 256
BstDEI	CTNAG	2 cut(s)	21, 449
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	517
BstFNI	CGCG	1 cut(s)	7
BstHHI	GCGC	2 cut(s)	7, 9
BstKTI	GATC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	173
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 233
BstPI	GGTNACC	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	149
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	67, 314
BtsCI	GGATG	1 cut(s)	517
BtsI	GCAGTG	2 cut(s)	48, 211
BtsIMutI	CAGTG	2 cut(s)	48, 211
Cac8I	GCNNGC	2 cut(s)	7, 256
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	2 cut(s)	7, 9
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	3 cut(s)	146, 430, 615
CviAII	CATG	4 cut(s)	133, 346, 397, 569
CviQI	GTAC	3 cut(s)	146, 430, 615
DdeI	CTNAG	2 cut(s)	21, 449
DpnI	GATC	1 cut(s)	175
DpnII	GATC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	68
Eco147I	AGGCCT	1 cut(s)	314
Eco57I	CTGAAG	2 cut(s)	111, 140
Eco88I	CYCGRG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	65
EcoO65I	GGTNACC	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	4 cut(s)	136, 349, 400, 572
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	4 cut(s)	132, 345, 396, 568
Fnu4HI	GCNGC	2 cut(s)	26, 152
FokI	GGATG	1 cut(s)	504
Fsp4HI	GCNGC	2 cut(s)	26, 152
FspBI	CTAG	2 cut(s)	69, 527
GlaI	GCGC	2 cut(s)	6, 8
GluI	GCNGC	2 cut(s)	26, 152
HaeIII	GGCC	2 cut(s)	67, 314
HhaI	GCGC	2 cut(s)	7, 9
Hin1II	CATG	4 cut(s)	136, 349, 400, 572
Hin6I	GCGC	2 cut(s)	5, 7
HinP1I	GCGC	2 cut(s)	5, 7
HinfI	GANTC	3 cut(s)	55, 248, 401
Hpy166II	GTNNAC	2 cut(s)	496, 532
Hpy188I	TCNGA	4 cut(s)	91, 168, 538, 562
Hpy188III	TCNNGA	5 cut(s)	183, 245, 346, 405, 477
Hpy8I	GTNNAC	2 cut(s)	496, 532
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	23, 51
HpyCH4V	TGCA	3 cut(s)	125, 151, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 233
HpyF3I	CTNAG	2 cut(s)	21, 449
Hsp92II	CATG	4 cut(s)	136, 349, 400, 572
HspAI	GCGC	2 cut(s)	5, 7
Kzo9I	GATC	1 cut(s)	173
LmnI	GCTCC	2 cut(s)	201, 371
LpnPI	CCDG	7 cut(s)	156, 268, 395, 418, 457, 462, 534
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	2 cut(s)	69, 527
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	175
MboI	GATC	1 cut(s)	173
MboII	GAAGA	4 cut(s)	153, 233, 320, 368
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	1 cut(s)	460
MnlI	CCTC	5 cut(s)	46, 179, 304, 353, 556
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	573
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	31, 233
NdeII	GATC	1 cut(s)	173
NlaIII	CATG	4 cut(s)	136, 349, 400, 572
NlaIV	GGNNCC	2 cut(s)	66, 191
PaeR7I	CTCGAG	1 cut(s)	183
PagI	TCATGA	1 cut(s)	345
PauI	GCGCGC	1 cut(s)	5
PceI	AGGCCT	1 cut(s)	314
PfeI	GAWTC	3 cut(s)	55, 248, 401
PkrI	GCNGC	2 cut(s)	27, 153
PspEI	GGTNACC	1 cut(s)	377
PspN4I	GGNNCC	2 cut(s)	66, 191
PspPI	GGNCC	1 cut(s)	65
PstI	CTGCAG	1 cut(s)	153
PteI	GCGCGC	1 cut(s)	5
RsaI	GTAC	3 cut(s)	147, 431, 616
RsaNI	GTAC	3 cut(s)	146, 430, 615
RseI	CAYNNNNRTG	1 cut(s)	573
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	2 cut(s)	26, 152
Sau3AI	GATC	1 cut(s)	173
Sau96I	GGNCC	1 cut(s)	65
ScaI	AGTACT	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	368
SfaNI	GCATC	1 cut(s)	422
SfcI	CTRYAG	1 cut(s)	149
Sfr274I	CTCGAG	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	1 cut(s)	460
SseBI	AGGCCT	1 cut(s)	314
SsiI	CCGC	2 cut(s)	26, 511
SspMI	CTAG	2 cut(s)	69, 527
StuI	AGGCCT	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	68
TaqI	TCGA	3 cut(s)	176, 184, 246
TaqII	GACCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	460
TatI	WGTACW	3 cut(s)	145, 429, 614
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	55, 248, 401
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	55, 211
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	470, 599
TspRI	CASTG	2 cut(s)	55, 211
XhoI	CTCGAG	1 cut(s)	183
XmaJI	CCTAGG	1 cut(s)	68
XspI	CTAG	2 cut(s)	69, 527
ZrmI	AGTACT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.