Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003092

Physical Location & Seq

Genomic Coordinates Reverse (-)

1073988 .. 1078201

Gene Structure 4214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG017300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGGGAACGATACAGAGTTGGTGACCCCAGGTGAAAAGCTTGGAAGAGCCTCCGAATTCAAAGCAGGCAGAGGTGCCTACGTGTCACCTGATAATCTCACCGTCTACGCTTCCCTCACTGGCCTCCGCCGCATCCTATCCCCGCCTCCTGACTCACCTGACCAGAGACCCATTGTGGAAGTAACTGGTCACAAGGCCCATGGTGCTATTCCGGAGCCTGGATCTATTGTCATTGCCAGAGTTACCAAAGTGATGGCCAGAATGGCTTCTGCTGATATCATGTGTCTAGGCACCAAGTCTGTGCGGGAAAACTTTACCGGCATTATTAGGCTTCAAGATATTAGAGCAACCGAGATTGATAAAGTGGATATGCACAAGTCTTTTCACCCTGGTGACATTGTCAGAGCTATTGTGCTATCCCTTGGAGATGCAAGAGCTTACTTTCTGTCAACTGCAAAGAATGAGCTGGGTGTTATTTCTGCTCAGAGTGCAGCAGGTGTGCCAATGGTGGCAATAAGTTGGACAGAGATGCAATGCCCCATCACAGGGCAAATTGAGCACAGAAAGGTTGCTAAGAATCTAATGGGGCCCAGATGGAAAGGAAAGGGCTTCAAAGCTAAAGCTCTTGCTGACCCCATGTCAAAGGTAGTACTGCAGCTTCAGTCTTCTCTAAATCAATCAAACTGTGAAGGGTTGCTATGTGGGTGTAGCGTGCTTCTCTCAGTTGAAGCAGAACAAGCTGATCTCCTTAACCGTTCGTGCTTTGGTGAAGCCATGGTTACTGCTGAGAAGGATAAGCAATGGTTTGAGTTGAGTTTGGAGGAGGGCTTTTATCTGAGCTATGCTCTAAAATGCCTCAGGATAGTTGAAGATAAATGTCTGAAGAGTGATGAGCAGCTATGGCAGTGCATGAAGTCTAGAAGTGCATTGTTTCCGTATTTCTATAAGGTGTATTCTCATCTTAGGATGAAGAATTGGGTTGTTATGTCAGGGATTACATATGGTGTGGACTTTGTTGCTTACCGTCATCATCCAGAGTTGGTACATTCTGAATATGCGGTGATTGTGTCATCGGAGGAGGAGGAGGGTGGTGCAAATAATCGATTGAGGGTGTGGTCTGATGTGCATTGCGCTACTCGGCTTTGTGGAGGTGTGGCAAAGACATTACTGGTTCTTGATATCAGCAGAAATGGTCATAGTGCAGACTCTTTATCGTGTTTGGAGAGTTATACTGTCAAGGAGCGCACGATAACAAGATGGAATCCAGAACAGTGCCGTGAAGATCATACAATGGTTGAAAGTGAAAATGGAGCCAAGGAAGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

442

Amino Acids

48.96

Weight (kDa)

6.65

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECR1_N	PF14382	7 - 45	3.6e-09	Exosome complex exonuclease RRP4 N-terminal region
EXOSC1	PF10447	100 - 141	3.1e-11	Exosome component EXOSC1/CSL4
tRNA_int_endo_N	PF02778	230 - 301	4.1e-12	tRNA intron endonuclease, N-terminal domain
tRNA_int_endo	PF01974	315 - 397	2.5e-15	tRNA intron endonuclease, catalytic C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45577 AT3G45590 AT3G45590 AT5G60230 AT5G60230
fragaria_vesca	FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101
rosa_chinensis	RchiOBHm_Chr6g0276201
rosa_laevigata	RLG00000013409 RLG00000025847
rosa_multiflora	Rmu_sc0002063.1_g000007 Rmu_sc0004048.1_g000016 Rmu_sc0008839.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125430 Rroxscaffold_7G00192490
rosa_rugosa	Rorug06G0098800 Rorug06G0098900 Rorug06G0098900 Rorug06G0099000 Rorug06G0099100 Rorug06G0099200 Rorug06G0099300 Rorug06G0124300
rosa_samantha	Rh1AG171200 Rh3BG017000 Rh3DG017300 Rh5BG538000 Rh5CG561900 Rh6AG210700 Rh6BG214900 Rh6DG207200
rosa_wichuraiana	Rw6G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	2 cut(s)	74, 290
AccI	GTMKAC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	5 cut(s)	127, 130, 143, 304, 1058
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	2 cut(s)	644, 902
AfaI	GTAC	2 cut(s)	651, 1044
AfiI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	6 cut(s)	61, 335, 613, 728, 869, 1298
AhdI	GACNNNNNGTC	1 cut(s)	637
AjnI	CCWGG	3 cut(s)	28, 217, 388
AleI	CACNNNNGTG	1 cut(s)	390
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	4 cut(s)	121, 195, 255, 587
ApaI	GGGCCC	1 cut(s)	591
ApeKI	GCWGC	3 cut(s)	491, 655, 895
ApoI	RAATTY	1 cut(s)	56
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	2 cut(s)	1133, 1245
AspS9I	GGNCC	3 cut(s)	196, 587, 588
AsuHPI	GGTGA	9 cut(s)	34, 44, 78, 91, 147, 377, 404, 779, 1072
AxyI	CCTNAGG	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	591
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	2 cut(s)	74, 290
BanII	GRGCYC	1 cut(s)	591
BarI	GAAGNNNNNNTAC	2 cut(s)	642, 674
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	503, 667, 907
BccI	CCATC	4 cut(s)	247, 548, 588, 1251
BceAI	ACGGC	1 cut(s)	1260
BciT130I	CCWGG	3 cut(s)	30, 219, 390
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	2 cut(s)	287, 918
BfmI	CTRYAG	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	4 cut(s)	130, 492, 656, 896
BlsI	GCNGC	4 cut(s)	131, 493, 657, 897
BmcAI	AGTACT	1 cut(s)	651
Bme1390I	CCNGG	3 cut(s)	30, 219, 390
BmeRI	GACNNNNNGTC	1 cut(s)	637
BmgT120I	GGNCC	3 cut(s)	196, 587, 588
BmiI	GGNNCC	6 cut(s)	76, 216, 292, 588, 589, 1312
BmrFI	CCNGG	3 cut(s)	30, 219, 390
BmsI	GCATC	3 cut(s)	141, 418, 519
BpiI	GAAGAC	1 cut(s)	657
BplI	GAGNNNNNCTC	2 cut(s)	829, 861
Bsa29I	ATCGAT	1 cut(s)	1102
BsaAI	YACGTR	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	6 cut(s)	28, 199, 388, 421, 774, 1314
BsaWI	WCCGGW	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 545, 546
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	3 cut(s)	124, 190, 1173
Bse21I	CCTNAGG	1 cut(s)	857
Bse3DI	GCAATG	4 cut(s)	231, 539, 806, 1126
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	3 cut(s)	30, 219, 390
BseCI	ATCGAT	1 cut(s)	1102
BseDI	CCNNGG	6 cut(s)	28, 199, 388, 421, 774, 1314
BseGI	GGATG	3 cut(s)	132, 972, 1030
BseLI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
BseMI	GCAATG	4 cut(s)	231, 539, 806, 1126
BseMII	CTCAG	5 cut(s)	497, 735, 777, 827, 871
BseNI	ACTGG	3 cut(s)	124, 190, 1173
BseRI	GAGGAG	4 cut(s)	836, 1091, 1094, 1097
BseSI	GKGCMC	1 cut(s)	591
BseXI	GCAGC	3 cut(s)	503, 667, 907
BseYI	CCCAGC	1 cut(s)	466
BsgI	GTGCAG	2 cut(s)	510, 1221
BshFI	GGCC	4 cut(s)	123, 197, 257, 589
BshNI	GGYRCC	2 cut(s)	74, 290
BshVI	ATCGAT	1 cut(s)	1102
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	212, 318
BslI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	4 cut(s)	123, 197, 257, 589
Bso31I	GGTCTC	1 cut(s)	160
Bsp120I	GGGCCC	1 cut(s)	587
Bsp1286I	GDGCHC	2 cut(s)	561, 591
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	3 cut(s)	221, 742, 1282
Bsp19I	CCATGG	2 cut(s)	199, 774
BspACI	CCGC	5 cut(s)	127, 130, 143, 304, 1058
BspANI	GGCC	4 cut(s)	123, 197, 257, 589
BspCNI	CTCAG	5 cut(s)	496, 734, 778, 828, 870
BspDI	ATCGAT	1 cut(s)	1102
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	6 cut(s)	76, 216, 292, 588, 589, 1312
BspMAI	CTGCAG	1 cut(s)	657
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	2 cut(s)	74, 290
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	4 cut(s)	231, 539, 806, 1126
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	124, 190, 1173
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	6 cut(s)	28, 199, 388, 421, 774, 1314
BssMI	GATC	3 cut(s)	221, 742, 1282
BssT1I	CCWWGG	4 cut(s)	199, 421, 774, 1314
Bst2UI	CCWGG	3 cut(s)	30, 219, 390
Bst4CI	ACNGT	6 cut(s)	103, 686, 755, 1025, 1234, 1272
Bst6I	CTCTTC	3 cut(s)	40, 878, 1314
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	67, 713
BstDEI	CTNAG	7 cut(s)	483, 573, 721, 786, 836, 857, 962
BstDSI	CCRYGG	2 cut(s)	199, 774
BstEII	GGTNACC	1 cut(s)	22
BstF5I	GGATG	3 cut(s)	132, 972, 1030
BstHHI	GCGC	2 cut(s)	1133, 1245
BstKTI	GATC	3 cut(s)	224, 745, 1285
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	3 cut(s)	221, 742, 1282
BstMWI	GCNNNNNNNGC	7 cut(s)	129, 203, 263, 488, 556, 737, 901
BstNI	CCWGG	3 cut(s)	30, 219, 390
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	28, 217, 388
BstSFI	CTRYAG	1 cut(s)	653
BstSLI	GKGCMC	1 cut(s)	591
BstV1I	GCAGC	3 cut(s)	503, 667, 907
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	1102
Bsu36I	CCTNAGG	1 cut(s)	857
BsuRI	GGCC	4 cut(s)	123, 197, 257, 589
BsuTUI	ATCGAT	1 cut(s)	1102
BtgI	CCRYGG	2 cut(s)	199, 774
BtsCI	GGATG	3 cut(s)	132, 972, 1030
BtsI	GCAGTG	1 cut(s)	911
BtsIMutI	CAGTG	3 cut(s)	117, 911, 1277
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	67, 713
CfoI	GCGC	2 cut(s)	1133, 1245
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	3 cut(s)	196, 587, 588
ClaI	ATCGAT	1 cut(s)	1102
Csp6I	GTAC	2 cut(s)	650, 1043
CviAII	CATG	5 cut(s)	200, 280, 637, 775, 910
CviQI	GTAC	2 cut(s)	650, 1043
DdeI	CTNAG	7 cut(s)	483, 573, 721, 786, 836, 857, 962
DpnI	GATC	3 cut(s)	223, 744, 1284
DpnII	GATC	3 cut(s)	221, 742, 1282
DriI	GACNNNNNGTC	1 cut(s)	637
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	3 cut(s)	40, 878, 1314
Eam1105I	GACNNNNNGTC	1 cut(s)	637
EarI	CTCTTC	3 cut(s)	40, 878, 1314
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	4 cut(s)	199, 421, 774, 1314
Eco24I	GRGCYC	1 cut(s)	591
Eco31I	GGTCTC	1 cut(s)	160
Eco32I	GATATC	2 cut(s)	277, 1180
Eco57I	CTGAAG	2 cut(s)	644, 902
Eco81I	CCTNAGG	1 cut(s)	857
Eco91I	GGTNACC	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	587
EcoO65I	GGTNACC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	28, 217, 388
EcoRV	GATATC	2 cut(s)	277, 1180
EcoT14I	CCWWGG	4 cut(s)	199, 421, 774, 1314
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	4 cut(s)	199, 421, 774, 1314
FaeI	CATG	5 cut(s)	203, 283, 640, 778, 913
FatI	CATG	5 cut(s)	199, 279, 636, 774, 909
FauI	CCCGC	2 cut(s)	150, 297
FauNDI	CATATG	1 cut(s)	1000
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	4 cut(s)	130, 492, 656, 896
FokI	GGATG	3 cut(s)	119, 979, 1017
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	4 cut(s)	130, 492, 656, 896
FspBI	CTAG	2 cut(s)	287, 918
GlaI	GCGC	2 cut(s)	1132, 1244
GluI	GCNGC	4 cut(s)	130, 492, 656, 896
GsaI	CCCAGC	1 cut(s)	470
HaeIII	GGCC	4 cut(s)	123, 197, 257, 589
HapII	CCGG	2 cut(s)	212, 318
HhaI	GCGC	2 cut(s)	1133, 1245
Hin1II	CATG	5 cut(s)	203, 283, 640, 778, 913
Hin6I	GCGC	2 cut(s)	1131, 1243
HinP1I	GCGC	2 cut(s)	1131, 1243
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	4 cut(s)	152, 577, 1205, 1261
HpaII	CCGG	2 cut(s)	212, 318
HphI	GGTGA	9 cut(s)	34, 44, 78, 91, 147, 377, 404, 779, 1072
Hpy166II	GTNNAC	3 cut(s)	106, 450, 1009
Hpy188I	TCNGA	8 cut(s)	55, 404, 486, 837, 882, 1051, 1075, 1120
Hpy188III	TCNNGA	8 cut(s)	149, 212, 335, 859, 918, 1034, 1175, 1265
Hpy8I	GTNNAC	3 cut(s)	106, 450, 1009
HpyAV	CCTTC	2 cut(s)	683, 784
HpyCH4III	ACNGT	6 cut(s)	103, 686, 755, 1025, 1234, 1272
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	7 cut(s)	129, 203, 263, 488, 556, 737, 901
HpyF3I	CTNAG	7 cut(s)	483, 573, 721, 786, 836, 857, 962
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	5 cut(s)	203, 283, 640, 778, 913
HspAI	GCGC	2 cut(s)	1131, 1243
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	3 cut(s)	221, 742, 1282
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	214, 1240, 1310
Lsp1109I	GCAGC	3 cut(s)	503, 667, 907
LweI	GCATC	3 cut(s)	141, 418, 519
MaeI	CTAG	2 cut(s)	287, 918
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	7 cut(s)	22, 84, 181, 188, 241, 392, 778
MalI	GATC	3 cut(s)	223, 744, 1284
MboI	GATC	3 cut(s)	221, 742, 1282
MboII	GAAGA	6 cut(s)	57, 657, 881, 895, 982, 1292
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	561, 591
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	3 cut(s)	56, 552, 973
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	146, 1199
MmeI	TCCRAC	1 cut(s)	500
Mox20I	TGGCCA	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	257
MspI	CCGG	2 cut(s)	212, 318
MspR9I	CCNGG	3 cut(s)	30, 219, 390
MvaI	CCWGG	3 cut(s)	30, 219, 390
MwoI	GCNNNNNNNGC	7 cut(s)	129, 203, 263, 488, 556, 737, 901
NcoI	CCATGG	2 cut(s)	199, 774
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	3 cut(s)	221, 742, 1282
NlaIII	CATG	5 cut(s)	203, 283, 640, 778, 913
NlaIV	GGNNCC	6 cut(s)	76, 216, 292, 588, 589, 1312
NmeAIII	GCCGAG	1 cut(s)	1117
NmuCI	GTSAC	4 cut(s)	22, 84, 188, 392
OliI	CACNNNNGTG	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	485
PciSI	GCTCTTC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	577, 1261
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	4 cut(s)	131, 493, 657, 897
PleI	GAGTC	2 cut(s)	146, 1199
PpsI	GAGTC	2 cut(s)	146, 1199
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	3 cut(s)	28, 217, 388
PspEI	GGTNACC	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	3 cut(s)	28, 217, 388
PspN4I	GGNNCC	6 cut(s)	76, 216, 292, 588, 589, 1312
PspOMI	GGGCCC	1 cut(s)	587
PspPI	GGNCC	3 cut(s)	196, 587, 588
PstI	CTGCAG	1 cut(s)	657
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	398
RsaI	GTAC	2 cut(s)	651, 1044
RsaNI	GTAC	2 cut(s)	650, 1043
RseI	CAYNNNNRTG	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	4 cut(s)	130, 492, 656, 896
Sau3AI	GATC	3 cut(s)	221, 742, 1282
Sau96I	GGNCC	3 cut(s)	196, 587, 588
ScaI	AGTACT	1 cut(s)	651
SchI	GAGTC	2 cut(s)	146, 1199
ScrFI	CCNGG	3 cut(s)	30, 219, 390
SduI	GDGCHC	2 cut(s)	561, 591
SfaNI	GCATC	3 cut(s)	141, 418, 519
SfcI	CTRYAG	1 cut(s)	653
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	56, 552, 973
SsiI	CCGC	5 cut(s)	127, 130, 143, 304, 1058
SspMI	CTAG	2 cut(s)	287, 918
StyD4I	CCNGG	3 cut(s)	28, 217, 388
StyI	CCWWGG	4 cut(s)	199, 421, 774, 1314
TaaI	ACNGT	6 cut(s)	103, 686, 755, 1025, 1234, 1272
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	1102
TasI	AATT	3 cut(s)	56, 552, 973
TatI	WGTACW	1 cut(s)	649
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	577, 1261
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	3 cut(s)	124, 911, 1277
TseFI	GTSAC	4 cut(s)	22, 84, 188, 392
TseI	GCWGC	3 cut(s)	491, 655, 895
Tsp45I	GTSAC	4 cut(s)	22, 84, 188, 392
TspDTI	ATGAA	2 cut(s)	926, 983
TspGWI	ACGGA	1 cut(s)	924
TspRI	CASTG	3 cut(s)	124, 911, 1277
Tth111I	GACNNNGTC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	917
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	2 cut(s)	287, 918
ZrmI	AGTACT	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.