Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002063.1

Orthogroup ID

OG0003092

Physical Location & Seq

Genomic Coordinates Forward (+)

23405 .. 23958

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002063.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atgcgaaatggtcagagtgtggactccccatcaagtgtggagagatttactgttgaagagcgtactataacaagatggaagccagaacaatgccgtgttgacgatagattagttcaaagtgaaaagggaaccgaattggagcaactcggtgctgatatattctcctgctgtattcactctaccgcctcagaacctcttgacatagatgattctgaacagatgttgaatgacgatgagctctttttcaacactatggcagaggatggaagcgatgaggaggtgggcttttgctactctaatttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

101

Amino Acids

11.48

Weight (kDa)

4.05

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45577 AT3G45590 AT3G45590 AT5G60230 AT5G60230
fragaria_vesca	FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101
rosa_chinensis	RchiOBHm_Chr6g0276201
rosa_laevigata	RLG00000013409 RLG00000025847
rosa_multiflora	Rmu_sc0002063.1_g000007 Rmu_sc0004048.1_g000016 Rmu_sc0008839.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125430 Rroxscaffold_7G00192490
rosa_rugosa	Rorug06G0098800 Rorug06G0098900 Rorug06G0098900 Rorug06G0099000 Rorug06G0099100 Rorug06G0099200 Rorug06G0099300 Rorug06G0124300
rosa_samantha	Rh1AG171200 Rh3BG017000 Rh3DG017300 Rh5BG538000 Rh5CG561900 Rh6AG210700 Rh6BG214900 Rh6DG207200
rosa_wichuraiana	Rw6G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	64
AgsI	TTSAA	4 cut(s)	56, 116, 226, 247
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	240
BccI	CCATC	3 cut(s)	37, 69, 257
BceAI	ACGGC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	130
BseGI	GGATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	200
BspLI	GGNNCC	1 cut(s)	130
BspQI	GCTCTTC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	187
BstF5I	GGATG	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	63
CviJI	RGCY	3 cut(s)	82, 238, 285
CviKI_1	RGCY	3 cut(s)	82, 238, 285
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	187
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	238
EcoICRI	GAGCTC	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	240
FaiI	YATR	4 cut(s)	68, 158, 203, 254
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	240
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	23, 209
Hpy166II	GTNNAC	2 cut(s)	22, 100
Hpy188I	TCNGA	3 cut(s)	15, 190, 214
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	2 cut(s)	22, 100
HpyCH4III	ACNGT	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	187
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	2 cut(s)	96, 178
MboII	GAAGA	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	2 cut(s)	134, 298
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	5 cut(s)	196, 204, 253, 268, 271
NlaIV	GGNNCC	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	209
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	240
SapI	GCTCTTC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	3 cut(s)	196, 240, 282
SgeI	CNNG	7 cut(s)	45, 84, 95, 107, 158, 177, 209
Sse9I	AATT	2 cut(s)	134, 298
SsiI	CCGC	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	240
TaaI	ACNGT	1 cut(s)	52
TasI	AATT	2 cut(s)	134, 298
TfiI	GAWTC	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.