Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003092

Physical Location & Seq

Genomic Coordinates Reverse (-)

13210119 .. 13210538

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0099300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCCTTAGTAGATGTGGGGATGTTTGTTATGCAAGTCTCATTGGCAATAGTAGCAATAGTAGCAGCTTCAATAACAACCACCACCACCCAAGTAGCAGCTGATCAAGCCAGCCTCTTACCACCTCAAGCCAAGCCTAACTGCCCCGACCGCTGTGGTGACCTCACAATCCCATACCCATTTGGCATCGGTGACGGCTGTTACCGACAGTTGCCGGAACAAAATCATCAATTCAGCATCACTTGTGACCAGTCCATCAAACCTCCATCAGCGTACTGGACAAGTGCTAAACGCTGGACAAGTACTAAAGTCCGGGTTACAAACTTCAACATTTCAGAGGGTGAGTTGCAAATCATGAGTTACATAGCGAAAGATTGTTATGACGCCCAGGGTAGTCGAACATACCGAACCACCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

139

Amino Acids

15.24

Weight (kDa)

6.53

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GUB_WAK_bind	PF13947	48 - 118	2.5e-09	Wall-associated receptor kinase galacturonan-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45577 AT3G45590 AT3G45590 AT5G60230 AT5G60230
fragaria_vesca	FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101
rosa_chinensis	RchiOBHm_Chr6g0276201
rosa_laevigata	RLG00000013409 RLG00000025847
rosa_multiflora	Rmu_sc0002063.1_g000007 Rmu_sc0004048.1_g000016 Rmu_sc0008839.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125430 Rroxscaffold_7G00192490
rosa_rugosa	Rorug06G0098800 Rorug06G0098900 Rorug06G0098900 Rorug06G0099000 Rorug06G0099100 Rorug06G0099200 Rorug06G0099300 Rorug06G0124300
rosa_samantha	Rh1AG171200 Rh3BG017000 Rh3DG017300 Rh5BG538000 Rh5CG561900 Rh6AG210700 Rh6BG214900 Rh6DG207200
rosa_wichuraiana	Rw6G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	384
AfaI	GTAC	2 cut(s)	275, 304
AgsI	TTSAA	2 cut(s)	72, 328
AjnI	CCWGG	1 cut(s)	387
AluBI	AGCT	2 cut(s)	68, 101
AluI	AGCT	2 cut(s)	68, 101
Alw26I	GTCTC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	65, 98
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	3 cut(s)	170, 203, 353
BbvI	GCAGC	2 cut(s)	77, 110
BccI	CCATC	2 cut(s)	263, 274
BceAI	ACGGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	389
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	66, 99
BlsI	GCNGC	2 cut(s)	67, 100
BmcAI	AGTACT	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	314, 389
BmrFI	CCNGG	2 cut(s)	314, 389
BmsI	GCATC	2 cut(s)	195, 246
BpuEI	CTTGAG	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	387, 388
Bse1I	ACTGG	2 cut(s)	250, 281
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	387, 388
BseGI	GGATG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	250, 281
BseXI	GCAGC	2 cut(s)	77, 110
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	215, 313
BsmAI	GTCTC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	250, 281
BssECI	CCNNGG	2 cut(s)	387, 388
BssMI	GATC	1 cut(s)	103
BssNI	GRCGYC	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	7, 417
BstEII	GGTNACC	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	103
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 62, 107, 150
BstNI	CCWGG	1 cut(s)	389
BstPI	GGTNACC	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	312, 387
BstV1I	GCAGC	2 cut(s)	77, 110
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	112
CciI	TCATGA	1 cut(s)	354
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	274, 303
CviAII	CATG	1 cut(s)	355
CviJI	RGCY	8 cut(s)	5, 68, 101, 110, 114, 131, 136, 198
CviKI_1	RGCY	8 cut(s)	5, 68, 101, 110, 114, 131, 136, 198
CviQI	GTAC	2 cut(s)	274, 303
DdeI	CTNAG	2 cut(s)	7, 417
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco91I	GGTNACC	1 cut(s)	158
EcoO65I	GGTNACC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	387
FaeI	CATG	1 cut(s)	358
FaiI	YATR	6 cut(s)	32, 175, 356, 365, 381, 403
FatI	CATG	1 cut(s)	354
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	66, 99
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	66, 99
GluI	GCNGC	2 cut(s)	66, 99
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	215, 313
HgaI	GACGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	358
HpaII	CCGG	2 cut(s)	215, 313
HphI	GGTGA	3 cut(s)	170, 203, 353
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	34, 349
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 62, 107, 150
HpyF3I	CTNAG	2 cut(s)	7, 417
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	1 cut(s)	358
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	8 cut(s)	124, 228, 262, 263, 280, 326, 374, 401
Lsp1109I	GCAGC	2 cut(s)	77, 110
LweI	GCATC	2 cut(s)	195, 246
MaeIII	GTNAC	6 cut(s)	158, 191, 200, 245, 316, 359
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MluCI	AATT	1 cut(s)	230
MnlI	CCTC	5 cut(s)	125, 135, 173, 273, 331
MspA1I	CMGCKG	2 cut(s)	101, 153
MspI	CCGG	2 cut(s)	215, 313
MspR9I	CCNGG	2 cut(s)	314, 389
MvaI	CCWGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	4 cut(s)	53, 62, 107, 150
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	358
NmuCI	GTSAC	3 cut(s)	158, 191, 245
PagI	TCATGA	1 cut(s)	354
PasI	CCCWGGG	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	67, 100
Psp6I	CCWGG	1 cut(s)	387
PspEI	GGTNACC	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	2 cut(s)	275, 304
RsaNI	GTAC	2 cut(s)	274, 303
SatI	GCNGC	2 cut(s)	66, 99
Sau3AI	GATC	1 cut(s)	103
ScaI	AGTACT	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	314, 389
SetI	ASST	5 cut(s)	70, 103, 127, 165, 265
SfaNI	GCATC	2 cut(s)	195, 246
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	1 cut(s)	230
SsiI	CCGC	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	312, 387
TaaI	ACNGT	1 cut(s)	210
TaqI	TCGA	1 cut(s)	397
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	302
TseFI	GTSAC	3 cut(s)	158, 191, 245
TseI	GCWGC	2 cut(s)	65, 98
Tsp45I	GTSAC	3 cut(s)	158, 191, 245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	273
ZrmI	AGTACT	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.