Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003092

Physical Location & Seq

Genomic Coordinates Forward (+)

48669105 .. 48673318

Gene Structure 4214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025847

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGGGAACGATACAGAGTTGGTGACCCCAGGTGAAAAGCTTGGAAGAGCTTCCGAATTCAAAGCAGGCAGGGGTGCCTACGTGTCACCTGATAATCTCACCGTCTACGCTTCCCTTACTGGCCTCCGCCGCATCCTATCCCCGCCTCCTGACTCACCCGACCAGAGACCCATTGTGGAAGTAACTGGTCACAAGGCCTATGGTGCTATTCCGGAGCCTGGATCTATTGTCATTGCCAGAGTTACCAAAGTGATGGCCAGAATGGCTTCTGCTGATATTATGTGTCTAGGCACTAAGTCTGTGCGGGAAAACTTCACCGGCATTATTAGGCTTCAAGATATTAGAGCAACCGAGATTGATAAAGTGGATATGCACAAGTCTTTTCACCCTGGTGACATTGTCAGAGCTATTGTGCTATCCCTTGGAGATGCAAGAGCTTACTTTTTATCAACTGCAAAGAATGAGCTGGGTGTTATTTCTGCTCAGAGTGCAGCAGGTGTGCCAATGGTGGCAATAAGTTGGACAGAGATGCAATGCCCCATTACAGGGCAAATTGAGCACAGAAAGAATCTAATGGGGCCTAGGTGGAAAGGAAAGGGCTTCAAATCTAAAGCTCTTGCAGACCCCATGTCAAAGATAGTACTGCAGCTCCAGTCTTCTCTGAATCAATCAAATTGTGAAGGATTGCTATGTGGGTGTAGTGTGCTTCTCTCAGCGGAAGCAGAACAGGCTGATCTCCTTAACCGCTCGTGCTTTGGTGAAGCCATGGTTATTGCTGAGAAGGATAAGCAATGTTTTGAGTTGAGTTTGGAGGAGGGCTTTTATCTGAGCTATGCTCTCAAATGCCTCAGGATAGTTGAAGATAAATGTCTGAAGAGTGATGAGCAGCTATGGCAGTGCATGAAGTCTAGAAGTGCATTGTTTCCGTATTTCTATAAGGTGTATTCTCATCTTAGGATGAAGAATTGGGTTGTTATGTCAGGGATTACATATGGTGTGGACTTTGTTGCTTACCGTCATCATCCAGAGTTGGTACATTCTGAATATGCGGTGATTGTGTCATCGGAGGAGGAGGAGGGTGGTGCAAATAATCGATTGAGGGTGTGGTCTGATGTGCATTGCGCTACTCGGCTTTGTGGAGGTGTGGCAAAGACATTACTGGTTCTTGATATCAGCAGAAATGGTCATAGTGCAGACTCTCCATCGTGTTTGGAGAGTTATACTGTCAAGGAGAGCACGATCACAAGATGGAATCCAGAACAGTGCCGCGAAGATCATACGATAGTTGAAAGTGAAAATGGAGCCAAGGAAGAGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000213 GO:0000214 GO:0000278 GO:0000281 GO:0000379 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0004549 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016892 GO:0016894 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0061640 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1902555 GO:1903047 GO:1905348

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_endo tRNA_int_endo_N

Protein Analysis

440

Amino Acids

48.52

Weight (kDa)

6.29

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECR1_N	PF14382	7 - 45	3.6e-09	Exosome complex exonuclease RRP4 N-terminal region
EXOSC1	PF10447	100 - 141	3e-11	Exosome component EXOSC1/CSL4
tRNA_int_endo_N	PF02778	227 - 298	5.8e-11	tRNA intron endonuclease, N-terminal domain
tRNA_int_endo	PF01974	312 - 394	2.6e-15	tRNA intron endonuclease, catalytic C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45577 AT3G45590 AT3G45590 AT5G60230 AT5G60230
fragaria_vesca	FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101 FvH4_2g14101
rosa_chinensis	RchiOBHm_Chr6g0276201
rosa_laevigata	RLG00000013409 RLG00000025847
rosa_multiflora	Rmu_sc0002063.1_g000007 Rmu_sc0004048.1_g000016 Rmu_sc0008839.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125430 Rroxscaffold_7G00192490
rosa_rugosa	Rorug06G0098800 Rorug06G0098900 Rorug06G0098900 Rorug06G0099000 Rorug06G0099100 Rorug06G0099200 Rorug06G0099300 Rorug06G0124300
rosa_samantha	Rh1AG171200 Rh3BG017000 Rh3DG017300 Rh5BG538000 Rh5CG561900 Rh6AG210700 Rh6BG214900 Rh6DG207200
rosa_wichuraiana	Rw6G018360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	74
AccBSI	CCGCTC	1 cut(s)	747
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	1 cut(s)	1269
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	8 cut(s)	127, 130, 143, 304, 716, 745, 1049, 1267
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	893
AfaI	GTAC	2 cut(s)	642, 1035
AfiI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	5 cut(s)	61, 335, 604, 860, 1289
AhdI	GACNNNNNGTC	1 cut(s)	628
AjnI	CCWGG	3 cut(s)	28, 217, 388
AleI	CACNNNNGTG	1 cut(s)	390
AluBI	AGCT	9 cut(s)	40, 50, 407, 437, 466, 614, 649, 831, 889
AluI	AGCT	9 cut(s)	40, 50, 407, 437, 466, 614, 649, 831, 889
Alw21I	GWGCWC	2 cut(s)	561, 1238
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	1 cut(s)	229
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	4 cut(s)	121, 195, 255, 578
ApeKI	GCWGC	3 cut(s)	491, 646, 886
ApoI	RAATTY	1 cut(s)	56
Asp700I	GAANNNNTTC	2 cut(s)	49, 265
AspA2I	CCTAGG	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	1124
AspS9I	GGNCC	1 cut(s)	578
AvrII	CCTAGG	1 cut(s)	581
AxyI	CCTNAGG	1 cut(s)	848
BalI	TGGCCA	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	74
BauI	CACGAG	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	2 cut(s)	561, 1238
BbvI	GCAGC	3 cut(s)	503, 658, 898
BccI	CCATC	3 cut(s)	247, 1210, 1242
BciT130I	CCWGG	3 cut(s)	30, 219, 390
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	3 cut(s)	287, 582, 909
BfmI	CTRYAG	1 cut(s)	644
BfuAI	ACCTGC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	263
BisI	GCNGC	5 cut(s)	130, 492, 647, 887, 1267
BlnI	CCTAGG	1 cut(s)	581
BlsI	GCNGC	5 cut(s)	131, 493, 648, 888, 1268
BmcAI	AGTACT	1 cut(s)	642
Bme1390I	CCNGG	3 cut(s)	30, 219, 390
BmeRI	GACNNNNNGTC	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	4 cut(s)	76, 216, 579, 1303
BmrFI	CCNGG	3 cut(s)	30, 219, 390
BmsI	GCATC	3 cut(s)	141, 418, 519
BpiI	GAAGAC	1 cut(s)	648
BplI	GAGNNNNNCTC	2 cut(s)	820, 852
BpmI	CTGGAG	1 cut(s)	635
Bsa29I	ATCGAT	1 cut(s)	1093
BsaAI	YACGTR	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	6 cut(s)	28, 388, 421, 581, 765, 1305
BsaWI	WCCGGW	1 cut(s)	211
BsaXI	ACNNNNNCTCC	2 cut(s)	633, 663
Bsc4I	CCNNNNNNNGG	3 cut(s)	218, 545, 546
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	4 cut(s)	124, 190, 652, 1164
Bse21I	CCTNAGG	1 cut(s)	848
Bse3DI	GCAATG	4 cut(s)	231, 539, 797, 1117
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	3 cut(s)	30, 219, 390
BseCI	ATCGAT	1 cut(s)	1093
BseDI	CCNNGG	6 cut(s)	28, 388, 421, 581, 765, 1305
BseGI	GGATG	3 cut(s)	132, 963, 1021
BseLI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
BseMI	GCAATG	4 cut(s)	231, 539, 797, 1117
BseMII	CTCAG	5 cut(s)	497, 726, 768, 818, 862
BseNI	ACTGG	4 cut(s)	124, 190, 652, 1164
BseRI	GAGGAG	4 cut(s)	827, 1082, 1085, 1088
BseXI	GCAGC	3 cut(s)	503, 658, 898
BseYI	CCCAGC	1 cut(s)	466
BsgI	GTGCAG	2 cut(s)	510, 1212
Bsh1236I	CGCG	1 cut(s)	1269
BshFI	GGCC	4 cut(s)	123, 197, 257, 580
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	1093
BsiHKAI	GWGCWC	2 cut(s)	561, 1238
BsiSI	CCGG	2 cut(s)	212, 318
BslI	CCNNNNNNNGG	3 cut(s)	218, 545, 546
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	4 cut(s)	123, 197, 257, 580
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	561, 1238
Bsp13I	TCCGGA	1 cut(s)	211
Bsp143I	GATC	4 cut(s)	221, 733, 1239, 1273
Bsp19I	CCATGG	1 cut(s)	765
BspACI	CCGC	8 cut(s)	127, 130, 143, 304, 716, 745, 1049, 1267
BspANI	GGCC	4 cut(s)	123, 197, 257, 580
BspCNI	CTCAG	5 cut(s)	496, 725, 769, 819, 861
BspDI	ATCGAT	1 cut(s)	1093
BspEI	TCCGGA	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	1269
BspLI	GGNNCC	4 cut(s)	76, 216, 579, 1303
BspMAI	CTGCAG	1 cut(s)	648
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	74
BspTNI	GGTCTC	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	747
BsrDI	GCAATG	4 cut(s)	231, 539, 797, 1117
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	4 cut(s)	124, 190, 652, 1164
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	6 cut(s)	28, 388, 421, 581, 765, 1305
BssMI	GATC	4 cut(s)	221, 733, 1239, 1273
BssSI	CACGAG	1 cut(s)	748
BssT1I	CCWWGG	4 cut(s)	421, 581, 765, 1305
Bst2BI	CACGAG	1 cut(s)	748
Bst2UI	CCWGG	3 cut(s)	30, 219, 390
Bst4CI	ACNGT	4 cut(s)	103, 1016, 1225, 1263
Bst6I	CTCTTC	3 cut(s)	40, 869, 1305
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	67
BstDEI	CTNAG	7 cut(s)	294, 483, 712, 777, 827, 848, 953
BstDSI	CCRYGG	1 cut(s)	765
BstEII	GGTNACC	1 cut(s)	22
BstF5I	GGATG	3 cut(s)	132, 963, 1021
BstFNI	CGCG	1 cut(s)	1269
BstHHI	GCGC	1 cut(s)	1124
BstKTI	GATC	4 cut(s)	224, 736, 1242, 1276
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	4 cut(s)	221, 733, 1239, 1273
BstMWI	GCNNNNNNNGC	7 cut(s)	129, 203, 263, 488, 556, 728, 892
BstNI	CCWGG	3 cut(s)	30, 219, 390
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	3 cut(s)	28, 217, 388
BstSFI	CTRYAG	1 cut(s)	644
BstUI	CGCG	1 cut(s)	1269
BstV1I	GCAGC	3 cut(s)	503, 658, 898
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	221
Bsu15I	ATCGAT	1 cut(s)	1093
Bsu36I	CCTNAGG	1 cut(s)	848
BsuRI	GGCC	4 cut(s)	123, 197, 257, 580
BsuTUI	ATCGAT	1 cut(s)	1093
BtgI	CCRYGG	1 cut(s)	765
BtsCI	GGATG	3 cut(s)	132, 963, 1021
BtsI	GCAGTG	1 cut(s)	902
BtsIMutI	CAGTG	2 cut(s)	902, 1268
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	1124
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	578
ClaI	ATCGAT	1 cut(s)	1093
Csp6I	GTAC	2 cut(s)	641, 1034
CviAII	CATG	3 cut(s)	628, 766, 901
CviQI	GTAC	2 cut(s)	641, 1034
DdeI	CTNAG	7 cut(s)	294, 483, 712, 777, 827, 848, 953
DpnI	GATC	4 cut(s)	223, 735, 1241, 1275
DpnII	GATC	4 cut(s)	221, 733, 1239, 1273
DriI	GACNNNNNGTC	1 cut(s)	628
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	3 cut(s)	40, 869, 1305
Eam1105I	GACNNNNNGTC	1 cut(s)	628
EarI	CTCTTC	3 cut(s)	40, 869, 1305
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	4 cut(s)	421, 581, 765, 1305
Eco147I	AGGCCT	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	1171
Eco57I	CTGAAG	1 cut(s)	893
Eco81I	CCTNAGG	1 cut(s)	848
Eco91I	GGTNACC	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	578
EcoO65I	GGTNACC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	3 cut(s)	28, 217, 388
EcoRV	GATATC	1 cut(s)	1171
EcoT14I	CCWWGG	4 cut(s)	421, 581, 765, 1305
ErhI	CCWWGG	4 cut(s)	421, 581, 765, 1305
FaeI	CATG	3 cut(s)	631, 769, 904
FatI	CATG	3 cut(s)	627, 765, 900
FauI	CCCGC	2 cut(s)	150, 297
FauNDI	CATATG	1 cut(s)	991
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	5 cut(s)	130, 492, 647, 887, 1267
FokI	GGATG	3 cut(s)	119, 970, 1008
Fsp4HI	GCNGC	5 cut(s)	130, 492, 647, 887, 1267
FspBI	CTAG	3 cut(s)	287, 582, 909
GlaI	GCGC	1 cut(s)	1123
GluI	GCNGC	5 cut(s)	130, 492, 647, 887, 1267
GsaI	CCCAGC	1 cut(s)	470
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	4 cut(s)	123, 197, 257, 580
HapII	CCGG	2 cut(s)	212, 318
HhaI	GCGC	1 cut(s)	1124
Hin1II	CATG	3 cut(s)	631, 769, 904
Hin6I	GCGC	1 cut(s)	1122
HinP1I	GCGC	1 cut(s)	1122
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	5 cut(s)	152, 568, 664, 1196, 1252
HpaII	CCGG	2 cut(s)	212, 318
Hpy166II	GTNNAC	2 cut(s)	106, 1000
Hpy188I	TCNGA	9 cut(s)	55, 404, 486, 663, 828, 873, 1042, 1066, 1111
Hpy188III	TCNNGA	8 cut(s)	149, 212, 335, 850, 909, 1025, 1166, 1256
Hpy8I	GTNNAC	2 cut(s)	106, 1000
HpyAV	CCTTC	2 cut(s)	674, 775
HpyCH4III	ACNGT	4 cut(s)	103, 1016, 1225, 1263
HpyCH4IV	ACGT	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	7 cut(s)	129, 203, 263, 488, 556, 728, 892
HpyF3I	CTNAG	7 cut(s)	294, 483, 712, 777, 827, 848, 953
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	631, 769, 904
HspAI	GCGC	1 cut(s)	1122
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	221, 733, 1239, 1273
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	214, 654, 1301
Lsp1109I	GCAGC	3 cut(s)	503, 658, 898
LweI	GCATC	3 cut(s)	141, 418, 519
MaeI	CTAG	3 cut(s)	287, 582, 909
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	6 cut(s)	22, 84, 181, 188, 241, 392
MalI	GATC	4 cut(s)	223, 735, 1241, 1275
MbiI	CCGCTC	1 cut(s)	747
MboI	GATC	4 cut(s)	221, 733, 1239, 1273
MboII	GAAGA	6 cut(s)	57, 648, 872, 886, 973, 1283
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	561, 1238
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	4 cut(s)	56, 552, 673, 964
MluNI	TGGCCA	1 cut(s)	257
MlyI	GAGTC	2 cut(s)	146, 1190
MmeI	TCCRAC	1 cut(s)	500
Mox20I	TGGCCA	1 cut(s)	257
MroI	TCCGGA	1 cut(s)	211
MroXI	GAANNNNTTC	2 cut(s)	49, 265
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	2 cut(s)	212, 318
MspR9I	CCNGG	3 cut(s)	30, 219, 390
MvaI	CCWGG	3 cut(s)	30, 219, 390
MvnI	CGCG	1 cut(s)	1269
MwoI	GCNNNNNNNGC	7 cut(s)	129, 203, 263, 488, 556, 728, 892
NcoI	CCATGG	1 cut(s)	765
NdeI	CATATG	1 cut(s)	991
NdeII	GATC	4 cut(s)	221, 733, 1239, 1273
NlaIII	CATG	3 cut(s)	631, 769, 904
NlaIV	GGNNCC	4 cut(s)	76, 216, 579, 1303
NmeAIII	GCCGAG	1 cut(s)	1108
NmuCI	GTSAC	4 cut(s)	22, 84, 188, 392
OliI	CACNNNNGTG	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	485
PceI	AGGCCT	1 cut(s)	197
PciSI	GCTCTTC	1 cut(s)	40
PdmI	GAANNNNTTC	2 cut(s)	49, 265
PfeI	GAWTC	3 cut(s)	568, 664, 1252
PflFI	GACNNNGTC	1 cut(s)	398
PkrI	GCNGC	5 cut(s)	131, 493, 648, 888, 1268
PleI	GAGTC	2 cut(s)	146, 1190
PpsI	GAGTC	2 cut(s)	146, 1190
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	3 cut(s)	28, 217, 388
PspEI	GGTNACC	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	466
PspGI	CCWGG	3 cut(s)	28, 217, 388
PspN4I	GGNNCC	4 cut(s)	76, 216, 579, 1303
PspPI	GGNCC	1 cut(s)	578
PstI	CTGCAG	1 cut(s)	648
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	398
RsaI	GTAC	2 cut(s)	642, 1035
RsaNI	GTAC	2 cut(s)	641, 1034
RseI	CAYNNNNRTG	1 cut(s)	390
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	741
SatI	GCNGC	5 cut(s)	130, 492, 647, 887, 1267
Sau3AI	GATC	4 cut(s)	221, 733, 1239, 1273
Sau96I	GGNCC	1 cut(s)	578
ScaI	AGTACT	1 cut(s)	642
SchI	GAGTC	2 cut(s)	146, 1190
ScrFI	CCNGG	3 cut(s)	30, 219, 390
SduI	GDGCHC	2 cut(s)	561, 1238
SfaNI	GCATC	3 cut(s)	141, 418, 519
SfcI	CTRYAG	1 cut(s)	644
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	4 cut(s)	56, 552, 673, 964
SseBI	AGGCCT	1 cut(s)	197
SsiI	CCGC	8 cut(s)	127, 130, 143, 304, 716, 745, 1049, 1267
SspMI	CTAG	3 cut(s)	287, 582, 909
StuI	AGGCCT	1 cut(s)	197
StyD4I	CCNGG	3 cut(s)	28, 217, 388
StyI	CCWWGG	4 cut(s)	421, 581, 765, 1305
TaaI	ACNGT	4 cut(s)	103, 1016, 1225, 1263
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	1 cut(s)	1093
TasI	AATT	4 cut(s)	56, 552, 673, 964
TatI	WGTACW	1 cut(s)	640
TauI	GCSGC	2 cut(s)	132, 1269
TfiI	GAWTC	3 cut(s)	568, 664, 1252
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	2 cut(s)	902, 1268
TseFI	GTSAC	4 cut(s)	22, 84, 188, 392
TseI	GCWGC	3 cut(s)	491, 646, 886
Tsp45I	GTSAC	4 cut(s)	22, 84, 188, 392
TspDTI	ATGAA	2 cut(s)	917, 974
TspGWI	ACGGA	1 cut(s)	915
TspRI	CASTG	2 cut(s)	902, 1268
Tth111I	GACNNNGTC	1 cut(s)	398
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	908
XmaJI	CCTAGG	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	2 cut(s)	49, 265
XspI	CTAG	3 cut(s)	287, 582, 909
ZrmI	AGTACT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.