Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0024034

Physical Location & Seq

Genomic Coordinates Reverse (-)

13401532 .. 13402053

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACAAGCTCTATTACCACTCCCAAAACCCTAATGACCAAGTCACTCTCAAAACCATACTTTACCTCCTCTTCCTCATCCCAGCTGCCCTTCAAATTTCGCAACCGTGCCATCGCCTCTTCTTCCATCTCCTGCAACTACACCCCAAACTCAGCAACTGTTCACATGGCTTCCCTGCCCCGACCTGATTCGTTTGGACGGTTTGGTAAGTATGGCGGGAAGTACGTCCCAGAAACTCTCATGCACGCATTGACTGAGCTAGAGACCGCGTTTCACGCTCTAGCTCATGACGAAGAATTTGAGAAGGTGTTGAATGAGATTTTGAGGGACTATGTTGGCAGGGAGACTCCTCTCTATTTTGCTGAGAGGCTTACTGAACATTACAAAAGTCCAAATGGTGAAGGCCCTCACATTTACCTAAAGAGGGATGATCTTAACCATACCGGGGCACACAAGATCAACAATGTTGTTGGCCAAGCTTTGCTCGCTAAGCGGCAGGGCAAGAAACTTATTTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009683 GO:0009684 GO:0009850 GO:0009851 GO:0009941 GO:0009987 GO:0010817 GO:0016020 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0019904 GO:0031967 GO:0031975 GO:0032787 GO:0034641 GO:0034754 GO:0042401 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0072330 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

174

Amino Acids

19.46

Weight (kDa)

9.3

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024034)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15230
rosa_multiflora	Rmu_sc0001474.1_g000008
rosa_rugosa	Rorug06G0113400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AciI	CCGC	3 cut(s)	216, 267, 493
AcoI	YGGCCR	1 cut(s)	472
AcsI	RAATTY	2 cut(s)	95, 296
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	424, 445
AgsI	TTSAA	2 cut(s)	94, 313
AluBI	AGCT	5 cut(s)	9, 85, 259, 284, 479
AluI	AGCT	5 cut(s)	9, 85, 259, 284, 479
Alw26I	GTCTC	2 cut(s)	257, 338
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	2 cut(s)	403, 472
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	2 cut(s)	95, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AspS9I	GGNCC	1 cut(s)	404
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	474
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	119, 134
BcnI	CCSGG	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	257, 338
BfaI	CTAG	2 cut(s)	260, 281
BisI	GCNGC	2 cut(s)	86, 494
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	2 cut(s)	87, 495
Bme1390I	CCNGG	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	445
Bpu1102I	GCTNAGC	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 445
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	2 cut(s)	77, 433
BseLI	CCNNNNNNNGG	2 cut(s)	424, 445
BseMII	CTCAG	3 cut(s)	165, 246, 354
BseRI	GAGGAG	2 cut(s)	58, 339
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	1 cut(s)	72
BseYI	CCCAGC	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	2 cut(s)	405, 474
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	2 cut(s)	212, 341
BslI	CCNNNNNNNGG	2 cut(s)	424, 445
BsmAI	GTCTC	2 cut(s)	257, 338
BsmFI	GGGAC	2 cut(s)	212, 341
BsnI	GGCC	2 cut(s)	405, 474
Bso31I	GGTCTC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	451
Bsp143I	GATC	2 cut(s)	430, 456
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	3 cut(s)	216, 267, 493
BspANI	GGCC	2 cut(s)	405, 474
BspCNI	CTCAG	3 cut(s)	164, 247, 355
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	2 cut(s)	430, 456
Bst4CI	ACNGT	3 cut(s)	107, 160, 201
Bst6I	CTCTTC	2 cut(s)	76, 124
BstC8I	GCNNGC	2 cut(s)	246, 486
BstDEI	CTNAG	4 cut(s)	151, 255, 363, 489
BstF5I	GGATG	2 cut(s)	77, 433
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	2 cut(s)	433, 459
BstMAI	GTCTC	2 cut(s)	257, 338
BstMBI	GATC	2 cut(s)	430, 456
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 485, 490
BstSCI	CCNGG	1 cut(s)	443
BstSLI	GKGCMC	1 cut(s)	451
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	405, 474
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	77, 433
Cac8I	GCNNGC	2 cut(s)	246, 486
CaiI	CAGNNNCTG	1 cut(s)	158
CciI	TCATGA	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	166, 241, 287
CviJI	RGCY	9 cut(s)	9, 85, 170, 259, 284, 370, 405, 474, 479
CviKI_1	RGCY	9 cut(s)	9, 85, 170, 259, 284, 370, 405, 474, 479
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	4 cut(s)	151, 255, 363, 489
DpnI	GATC	2 cut(s)	432, 458
DpnII	GATC	2 cut(s)	430, 456
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	76, 124
EarI	CTCTTC	2 cut(s)	76, 124
Eco31I	GGTCTC	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	404
FaeI	CATG	3 cut(s)	169, 244, 290
FaiI	YATR	7 cut(s)	58, 167, 213, 242, 288, 333, 441
FaqI	GGGAC	2 cut(s)	212, 341
FatI	CATG	3 cut(s)	165, 240, 286
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	2 cut(s)	86, 494
FokI	GGATG	2 cut(s)	64, 440
Fsp4HI	GCNGC	2 cut(s)	86, 494
FspBI	CTAG	2 cut(s)	260, 281
GluI	GCNGC	2 cut(s)	86, 494
GsaI	CCCAGC	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	405, 474
HapII	CCGG	1 cut(s)	444
Hin1II	CATG	3 cut(s)	169, 244, 290
HindIII	AAGCTT	1 cut(s)	477
HinfI	GANTC	2 cut(s)	188, 346
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	100, 298, 395
HpyCH4III	ACNGT	3 cut(s)	107, 160, 201
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	135, 244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 485, 490
HpyF3I	CTNAG	4 cut(s)	151, 255, 363, 489
HpySE526I	ACGT	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	169, 244, 290
Kzo9I	GATC	2 cut(s)	430, 456
LpnPI	CCDG	8 cut(s)	95, 145, 188, 198, 243, 325, 457, 482
Lsp1109I	GCAGC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	260, 281
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	2 cut(s)	432, 458
MboI	GATC	2 cut(s)	430, 456
MboII	GAAGA	4 cut(s)	63, 111, 114, 305
MhlI	GDGCHC	1 cut(s)	451
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	2 cut(s)	95, 296
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	9 cut(s)	76, 79, 85, 127, 318, 360, 360, 417, 417
Mox20I	TGGCCA	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	1 cut(s)	445
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	275, 485, 490
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	2 cut(s)	430, 456
NlaIII	CATG	3 cut(s)	169, 244, 290
NmuCI	GTSAC	1 cut(s)	42
PagI	TCATGA	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	40
PkrI	GCNGC	2 cut(s)	87, 495
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PspFI	CCCAGC	1 cut(s)	81
PspPI	GGNCC	1 cut(s)	404
PstNI	CAGNNNCTG	1 cut(s)	158
PsyI	GACNNNGTC	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	86, 494
Sau3AI	GATC	2 cut(s)	430, 456
Sau96I	GGNCC	1 cut(s)	404
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	1 cut(s)	451
Sse9I	AATT	2 cut(s)	95, 296
SsiI	CCGC	3 cut(s)	216, 267, 493
SspMI	CTAG	2 cut(s)	260, 281
StyD4I	CCNGG	1 cut(s)	443
TaaI	ACNGT	3 cut(s)	107, 160, 201
TaiI	ACGT	1 cut(s)	228
TasI	AATT	2 cut(s)	95, 296
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	42
Tth111I	GACNNNGTC	1 cut(s)	40
XapI	RAATTY	2 cut(s)	95, 296
XspI	CTAG	2 cut(s)	260, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.