Rorug06G0113400

tryptophan synthase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
15456712 .. 15456951
240 bp
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UTR
Exon/CDS
Intron
Rorug06G0113400.1

Sequence Viewer

Length: 240 bp
ATGGTGAATGCTACTAAGGAGAACGGTGGTAACCTCTCTGTTCTAGGTCGTATTCCTGATGATATCGTGGCCTCTTTGCAGGTTCTCCCTGGAGCTTCTTTCTCTCATGTCTACCGTGAGTCCAACACAGCAGCTCATAAACTTGCTAATCTAGCTTTGCATTCTTGCTTAGATGTTTCTTGGGTGGGATCTATTCCTCCAAGTGTTTGGGAGTTTGTACTCTCGAATTGTATTCGTTAA

Protein Analysis

79

Amino Acids

8.47

Weight (kDa)

6.23

Isoelectric Point (pI)

18.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024034)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g15230
rosa_multiflora Rmu_sc0001474.1_g000008
rosa_rugosa Rorug06G0113400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 111
AclWI GGATC 1 cut(s) 196
AfaI GTAC 1 cut(s) 219
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 3 cut(s) 95, 134, 155
AluI AGCT 3 cut(s) 95, 134, 155
AlwI GGATC 1 cut(s) 196
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 16
BbvI GCAGC 1 cut(s) 143
BciT130I CCWGG 1 cut(s) 90
BfaI CTAG 2 cut(s) 44, 152
BfuAI ACCTGC 1 cut(s) 70
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 143
BshFI GGCC 1 cut(s) 71
BsmI GAATGC 2 cut(s) 13, 160
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 188
BspANI GGCC 1 cut(s) 71
BspMI ACCTGC 1 cut(s) 70
BspPI GGATC 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 188
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 26, 116
BstDEI CTNAG 2 cut(s) 15, 169
BstEII GGTNACC 1 cut(s) 29
BstKTI GATC 1 cut(s) 191
BstMBI GATC 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 1 cut(s) 90
BstPI GGTNACC 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 207
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 1 cut(s) 71
BveI ACCTGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 218
CviAII CATG 1 cut(s) 107
CviJI RGCY 4 cut(s) 71, 95, 134, 155
CviKI_1 RGCY 4 cut(s) 71, 95, 134, 155
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 2 cut(s) 15, 169
DpnI GATC 1 cut(s) 190
DpnII GATC 1 cut(s) 188
Eco32I GATATC 1 cut(s) 64
Eco91I GGTNACC 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 88
EcoRV GATATC 1 cut(s) 64
FaeI CATG 1 cut(s) 110
FaiI YATR 2 cut(s) 108, 138
FatI CATG 1 cut(s) 106
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 44, 152
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 1 cut(s) 71
Hin1II CATG 1 cut(s) 110
HinfI GANTC 1 cut(s) 119
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 56, 223
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4III ACNGT 2 cut(s) 26, 116
HpyCH4V TGCA 2 cut(s) 79, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 2 cut(s) 15, 169
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 4 cut(s) 65, 69, 75, 102
Lsp1109I GCAGC 1 cut(s) 143
MaeI CTAG 2 cut(s) 44, 152
MaeIII GTNAC 1 cut(s) 29
MalI GATC 1 cut(s) 190
MboI GATC 1 cut(s) 188
MflI RGATCY 1 cut(s) 188
MluCI AATT 1 cut(s) 226
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 44, 82, 207
MseI TTAA 1 cut(s) 238
MspR9I CCNGG 1 cut(s) 90
Mva1269I GAATGC 2 cut(s) 13, 160
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 1 cut(s) 188
NlaIII CATG 1 cut(s) 110
PctI GAATGC 2 cut(s) 13, 160
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 188
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 90
SetI ASST 6 cut(s) 36, 49, 84, 97, 136, 157
Sse9I AATT 1 cut(s) 226
SspMI CTAG 2 cut(s) 44, 152
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 26, 116
TaqI TCGA 1 cut(s) 224
TasI AATT 1 cut(s) 226
TatI WGTACW 1 cut(s) 217
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TseI GCWGC 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 2 cut(s) 44, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.