FvH4_2g27610

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0027746
Physical Location & Seq
Forward (+)
21868180 .. 21869781
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27610.t1

Sequence Viewer

Length: 642 bp
ATGGGGAACAAACTTGAAGGTACAGTTCCCAAGGCTCTGATGGAAAGGCATAATAGTGGAACATTAACACTGAAGTATGGGCTCCCTTGGAGGAGGATATGGAAGAGCGTACCATGGCCTGGCCTGCTAAAAGACAGCACTCAAGTTGCCGTCAAGGTGCTTTCTTCTACCTCAAGGCAAGGGTCCCAAGGACTTCAATTCGAGGTGGAACTCTTGCTGGGAATTCATCATAAGAATGTGGTTTCACTTTTTGGGTACTGTAATGAAGGTCTCAATATGGTACTTGTTTATGAGTTCTTGGTCTTTGGAAATTTGCAACAGCATCTATTAGCAGAAGGAAAGGAAATCGAGAACATAGTTGATCCGAGATTACAAAGATACAGCATAAACTCTGCCTGGAGAGCCATAGAGGTAGCAATGGCTTGTTTACCTTCTCTGGCAGTACAAAGGCCAGACATCAGTTATGTGTATGATGAGTTGAAGGAATGTCTGAAAATGGAGATGGATTCTGAGAAACCTCTGGTGATGAAGGGCAACCAAACCTGGTCAAGTGGCTTAGTTCATACTACTCCTTTGGATGATCCAAAAACCAAAAGGCACCACACTTGCTACTTGCTAGTATTAAGACTAGTTCAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_4 LRR_8 Malectin_like Pkinase Pkinase_Tyr

Protein Analysis

214

Amino Acids

24.2

Weight (kDa)

8.3

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 44 - 117 2.2e-10 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 45 - 113 5.9e-06 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0027746)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g27591 FvH4_2g27610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 597
AccB7I CCANNNNNTGG 1 cut(s) 119
AclWI GGATC 2 cut(s) 356, 575
AcsI RAATTY 2 cut(s) 222, 310
AcuI CTGAAG 1 cut(s) 92
AfaI GTAC 5 cut(s) 22, 111, 257, 282, 444
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 3 cut(s) 17, 197, 481
AhlI ACTAGT 1 cut(s) 628
AjnI CCWGG 3 cut(s) 118, 395, 542
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 2 cut(s) 356, 575
AoxI GGCC 3 cut(s) 116, 121, 449
ApoI RAATTY 2 cut(s) 222, 310
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 535
AvaII GGWCC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 597
BanII GRGCYC 1 cut(s) 84
BccI CCATC 2 cut(s) 34, 496
BceAI ACGGC 1 cut(s) 134
BciT130I CCWGG 3 cut(s) 120, 397, 544
BcoDI GTCTC 1 cut(s) 275
BcuI ACTAGT 1 cut(s) 628
BfaI CTAG 2 cut(s) 617, 629
Bme1390I CCNGG 3 cut(s) 120, 397, 544
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 4 cut(s) 83, 184, 185, 599
BmrFI CCNGG 3 cut(s) 120, 397, 544
BmsI GCATC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 418
BpuEI CTTGAG 2 cut(s) 126, 157
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 4 cut(s) 30, 86, 113, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 3 cut(s) 120, 397, 544
BseDI CCNNGG 4 cut(s) 30, 86, 113, 187
BseGI GGATG 1 cut(s) 583
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 501
BseRI GAGGAG 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 217
BshFI GGCC 3 cut(s) 118, 123, 451
BshNI GGYRCC 1 cut(s) 597
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 3 cut(s) 118, 123, 451
Bso31I GGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 361, 580
Bsp19I CCATGG 1 cut(s) 113
BspANI GGCC 3 cut(s) 118, 123, 451
BspCNI CTCAG 1 cut(s) 502
BspLI GGNNCC 4 cut(s) 83, 184, 185, 599
BspPI GGATC 2 cut(s) 356, 575
BspQI GCTCTTC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 597
BspTNI GGTCTC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 423
BssECI CCNNGG 4 cut(s) 30, 86, 113, 187
BssMI GATC 2 cut(s) 361, 580
BssT1I CCWWGG 4 cut(s) 30, 86, 113, 187
Bst2UI CCWGG 3 cut(s) 120, 397, 544
Bst4CI ACNGT 2 cut(s) 25, 260
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 510, 556
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 583
BstKTI GATC 2 cut(s) 364, 583
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 2 cut(s) 361, 580
BstMWI GCNNNNNNNGC 2 cut(s) 124, 401
BstNI CCWGG 3 cut(s) 120, 397, 544
BstSCI CCNGG 3 cut(s) 118, 395, 542
BsuRI GGCC 3 cut(s) 118, 123, 451
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 1 cut(s) 583
BtsIMutI CAGTG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 183
CsiI ACCWGGT 1 cut(s) 542
Csp6I GTAC 5 cut(s) 21, 110, 256, 281, 443
CviAII CATG 1 cut(s) 114
CviJI RGCY 8 cut(s) 35, 82, 118, 123, 404, 422, 451, 555
CviKI_1 RGCY 8 cut(s) 35, 82, 118, 123, 404, 422, 451, 555
CviQI GTAC 5 cut(s) 21, 110, 256, 281, 443
DdeI CTNAG 2 cut(s) 510, 556
DpnI GATC 2 cut(s) 363, 582
DpnII GATC 2 cut(s) 361, 580
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 4 cut(s) 30, 86, 113, 187
Eco24I GRGCYC 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 183
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 3 cut(s) 118, 395, 542
EcoT14I CCWWGG 4 cut(s) 30, 86, 113, 187
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 4 cut(s) 30, 86, 113, 187
FaeI CATG 1 cut(s) 117
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 113
FokI GGATG 1 cut(s) 590
FriOI GRGCYC 1 cut(s) 84
FspBI CTAG 2 cut(s) 617, 629
GsaI CCCAGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 3 cut(s) 118, 123, 451
Hin1II CATG 1 cut(s) 117
HinfI GANTC 1 cut(s) 506
HphI GGTGA 1 cut(s) 535
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 4 cut(s) 39, 366, 492, 511
Hpy188III TCNNGA 2 cut(s) 349, 635
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 6 cut(s) 11, 260, 329, 441, 475, 523
HpyCH4III ACNGT 2 cut(s) 25, 260
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 401
HpyF3I CTNAG 2 cut(s) 510, 556
Hsp92II CATG 1 cut(s) 117
KflI GGGWCCC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 361, 580
LguI GCTCTTC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 87
LweI GCATC 1 cut(s) 331
MabI ACCWGGT 1 cut(s) 542
MaeI CTAG 2 cut(s) 617, 629
MalI GATC 2 cut(s) 363, 582
MboI GATC 2 cut(s) 361, 580
MboII GAAGA 2 cut(s) 115, 156
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 3 cut(s) 197, 222, 310
MnlI CCTC 6 cut(s) 84, 87, 181, 196, 403, 528
MseI TTAA 2 cut(s) 65, 623
MslI CAYNNNNRTG 2 cut(s) 54, 234
MspR9I CCNGG 3 cut(s) 120, 397, 544
MvaI CCWGG 3 cut(s) 120, 397, 544
MwoI GCNNNNNNNGC 2 cut(s) 124, 401
NcoI CCATGG 1 cut(s) 113
NdeII GATC 2 cut(s) 361, 580
NlaIII CATG 1 cut(s) 117
NlaIV GGNNCC 4 cut(s) 83, 184, 185, 599
PciSI GCTCTTC 1 cut(s) 98
PfeI GAWTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 183
Psp6I CCWGG 3 cut(s) 118, 395, 542
PspFI CCCAGC 1 cut(s) 217
PspGI CCWGG 3 cut(s) 118, 395, 542
PspN4I GGNNCC 4 cut(s) 83, 184, 185, 599
PspPI GGNCC 1 cut(s) 183
PspPPI RGGWCCY 1 cut(s) 183
RsaI GTAC 5 cut(s) 22, 111, 257, 282, 444
RsaNI GTAC 5 cut(s) 21, 110, 256, 281, 443
RseI CAYNNNNRTG 2 cut(s) 54, 234
SapI GCTCTTC 1 cut(s) 98
SaqAI TTAA 2 cut(s) 65, 623
Sau3AI GATC 2 cut(s) 361, 580
Sau96I GGNCC 1 cut(s) 183
ScrFI CCNGG 3 cut(s) 120, 397, 544
SduI GDGCHC 1 cut(s) 84
SetI ASST 9 cut(s) 22, 159, 173, 207, 271, 414, 433, 520, 545
SexAI ACCWGGT 1 cut(s) 542
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 183
SmiMI CAYNNNNRTG 2 cut(s) 54, 234
SmlI CTYRAG 2 cut(s) 141, 172
SmoI CTYRAG 2 cut(s) 141, 172
SpeI ACTAGT 1 cut(s) 628
Sse9I AATT 3 cut(s) 197, 222, 310
SspMI CTAG 2 cut(s) 617, 629
StyD4I CCNGG 3 cut(s) 118, 395, 542
StyI CCWWGG 4 cut(s) 30, 86, 113, 187
TaaI ACNGT 2 cut(s) 25, 260
TaqI TCGA 2 cut(s) 201, 348
TasI AATT 3 cut(s) 197, 222, 310
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 2 cut(s) 65, 623
Tru9I TTAA 2 cut(s) 65, 623
TscAI CASTG 1 cut(s) 75
TspDTI ATGAA 4 cut(s) 215, 279, 542, 551
TspRI CASTG 1 cut(s) 75
Van91I CCANNNNNTGG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 2 cut(s) 222, 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 2 cut(s) 617, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.