FvH4_2g30530

Cryptochrome DASH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0027751
Physical Location & Seq
Reverse (-)
23629758 .. 23630354
597 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30530.t1

Sequence Viewer

Length: 327 bp
ATGGGTATTGACTGGCGCATGGGAGCTGAATGGTTTGAGACATGCTTTTGGATTATGACCCTTGTTCCAATTATGGTAATTGGACCTATGGAGCAGGCACAGAATTATGATCCTGAAGGCGAGTATGTGGCGTACTGGTTCCCACAGCTAAAATCACTTACAAAAGAGAATAGGCACTTCCCTGGAATGACATATATCAAGCAGGTTGTCCCTCTCAAGTTTGGTAATGCCGGTAAGTACCAAAACCACGGCAAAGCCTCGACTGCCAGAGGCACAAACTTTGGAAGGCAAACAAAAGGACCTAGTTTAGCTAAAAAGCGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_photolyase FAD_binding_7

Protein Analysis

109

Amino Acids

12.39

Weight (kDa)

9.63

Isoelectric Point (pI)

20.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_7 PF03441 25 - 63 2.8e-06 FAD binding domain of DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027751)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30530
rosa_multiflora Rmu_ssc0000424.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 193
AciI CCGC 1 cut(s) 319
AclWI GGATC 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 2 cut(s) 134, 239
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 3 cut(s) 26, 148, 311
AluI AGCT 3 cut(s) 26, 148, 311
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 2 cut(s) 83, 299
AvaII GGWCC 2 cut(s) 83, 299
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 193
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 2 cut(s) 83, 299
BmgT120I GGNCC 2 cut(s) 83, 299
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 181, 247
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 17, 140
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 181, 247
BseNI ACTGG 2 cut(s) 17, 140
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 109
BspACI CCGC 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 140
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 1 cut(s) 104
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 2 cut(s) 17, 140
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 181, 247
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 247
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 247
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 18
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 83, 299
Csp6I GTAC 2 cut(s) 133, 238
CviAII CATG 2 cut(s) 19, 42
CviJI RGCY 4 cut(s) 26, 148, 257, 311
CviKI_1 RGCY 4 cut(s) 26, 148, 257, 311
CviQI GTAC 2 cut(s) 133, 238
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 83, 299
Eco57I CTGAAG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 181
FaeI CATG 2 cut(s) 22, 45
FaiI YATR 9 cut(s) 20, 43, 56, 74, 89, 108, 126, 193, 195
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 18, 41
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 17
HapII CCGG 1 cut(s) 231
HhaI GCGC 1 cut(s) 18
Hin1II CATG 2 cut(s) 22, 45
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HpaII CCGG 1 cut(s) 231
Hpy188III TCNNGA 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 110, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
Hsp92II CATG 2 cut(s) 22, 45
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 23, 91
LpnPI CCDG 8 cut(s) 80, 121, 126, 168, 188, 195, 244, 280
MaeI CTAG 1 cut(s) 303
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MluCI AATT 3 cut(s) 69, 78, 103
MnlI CCTC 3 cut(s) 222, 263, 268
MseI TTAA 1 cut(s) 325
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 263
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 22, 45
NlaIV GGNNCC 1 cut(s) 140
NspI RCATGY 1 cut(s) 45
PpuMI RGGWCCY 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 2 cut(s) 83, 299
PspPPI RGGWCCY 1 cut(s) 299
RsaI GTAC 2 cut(s) 134, 239
RsaNI GTAC 2 cut(s) 133, 238
SaqAI TTAA 1 cut(s) 325
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 2 cut(s) 83, 299
ScrFI CCNGG 1 cut(s) 183
SetI ASST 6 cut(s) 28, 88, 150, 207, 304, 313
SinI GGWCC 2 cut(s) 83, 299
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 3 cut(s) 69, 78, 103
SsiI CCGC 1 cut(s) 319
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 1 cut(s) 181
TaqI TCGA 1 cut(s) 260
TasI AATT 3 cut(s) 69, 78, 103
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 83, 299
XceI RCATGY 1 cut(s) 45
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.