FvH4_2g35170

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0019674
Physical Location & Seq
Reverse (-)
25978144 .. 25978685
542 bp
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UTR
Exon/CDS
Intron
FvH4_2g35170.t1

Sequence Viewer

Length: 414 bp
ATGGCGGAGACGGAGTCGTATCAGAAGCCGGAAGACTACTCGGTCGGCGAGACTGCTAGTACTATTAATGTGAAGTTTTTGAGCTCAACCGCAGTTGGTGTCACGCTATATTTCTTGTCCGGGTTAACTTTAACGGGGACGTTGTTAGCGCTGATCGTGGTTACACCGGCTGTGGTGTTGTTTAGTCCGATTCTGATTCCGGCTGGGGTATTCGTGTTCCTAGTCGGAGCTGGTTTTGTGTTGTCGGCGGTGGGTGCAATATGGGCGTCATCCATGTTGTTTAAGTATGCGTCCAAGAAGAAGAACTGGACGCAGTTTTTATTTGATCTGGGGCTTAGTCTTGTGAGGAAGTACTTGAAGATGAGATTCGGGTGGATTGGTTGGTTATGGCCTTTGTGGGAGTGGATTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

138

Amino Acids

15.22

Weight (kDa)

9.44

Isoelectric Point (pI)

21.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 24 - 101 1.3e-17 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35170
rosa_chinensis RchiOBHm_Chr6g0306771
rosa_multiflora Rmu_sc0042119.1_g000002 Rmu_sc0042162.1_g000001
rosa_roxburghii Rroxscaffold_7G00161470
rosa_rugosa Rorug06G0352700
rosa_samantha Rh6CG479000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 41
AciI CCGC 3 cut(s) 5, 90, 248
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 2 cut(s) 61, 353
AfeI AGCGCT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 358
AluBI AGCT 2 cut(s) 84, 230
AluI AGCT 2 cut(s) 84, 230
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 2 cut(s) 2, 44
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 1 cut(s) 389
AseI ATTAAT 1 cut(s) 66
AspLEI GCGC 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 121
BanII GRGCYC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 86
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 2, 44
BfaI CTAG 2 cut(s) 57, 221
BfoI RGCGCY 1 cut(s) 152
BmcAI AGTACT 2 cut(s) 61, 353
Bme1390I CCNGG 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 39
BpuMI CCSGG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 266
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 311
BseGI GGATG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 311
BseYI CCCAGC 1 cut(s) 203
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 391
BsiEI CGRYCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 86
BsiSI CCGG 4 cut(s) 29, 120, 167, 200
BslFI GGGAC 1 cut(s) 151
BsmAI GTCTC 2 cut(s) 2, 44
BsmBI CGTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 153, 325
BspACI CCGC 3 cut(s) 5, 90, 248
BspANI GGCC 1 cut(s) 391
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 166
BssMI GATC 2 cut(s) 153, 325
BssNI GRCGYC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 269
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 2 cut(s) 156, 328
BstMAI GTCTC 2 cut(s) 2, 44
BstMBI GATC 2 cut(s) 153, 325
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 254, 263
BstSCI CCNGG 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 39
BsuRI GGCC 1 cut(s) 391
BtsCI GGATG 1 cut(s) 269
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 166
CseI GACGC 3 cut(s) 255, 279, 319
Csp6I GTAC 2 cut(s) 60, 352
CviAII CATG 1 cut(s) 274
CviJI RGCY 7 cut(s) 28, 84, 170, 203, 230, 334, 391
CviKI_1 RGCY 7 cut(s) 28, 84, 170, 203, 230, 334, 391
CviQI GTAC 2 cut(s) 60, 352
DdeI CTNAG 1 cut(s) 335
DpnI GATC 2 cut(s) 155, 327
DpnII GATC 2 cut(s) 153, 325
DrdI GACNNNNNNGTC 1 cut(s) 41
DseDI GACNNNNNNGTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 86
Eco47III AGCGCT 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 1 cut(s) 277
FaiI YATR 5 cut(s) 109, 262, 275, 288, 388
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 273
FokI GGATG 1 cut(s) 256
FriOI GRGCYC 1 cut(s) 86
FspBI CTAG 2 cut(s) 57, 221
GlaI GCGC 1 cut(s) 150
GsaI CCCAGC 1 cut(s) 207
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 391
HapII CCGG 4 cut(s) 29, 120, 167, 200
HgaI GACGC 3 cut(s) 255, 279, 319
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 1 cut(s) 277
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 4 cut(s) 14, 190, 196, 366
HpaI GTTAAC 1 cut(s) 126
HpaII CCGG 4 cut(s) 29, 120, 167, 200
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 4 cut(s) 24, 189, 195, 227
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 263
HpyF3I CTNAG 1 cut(s) 335
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 1 cut(s) 277
HspAI GCGC 1 cut(s) 149
KspAI GTTAAC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 153, 325
LmnI GCTCC 1 cut(s) 227
LpnPI CCDG 8 cut(s) 42, 133, 180, 189, 213, 216, 292, 314
MaeI CTAG 2 cut(s) 57, 221
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 100, 160
MalI GATC 2 cut(s) 155, 327
MboI GATC 2 cut(s) 153, 325
MboII GAAGA 4 cut(s) 44, 310, 313, 370
MhlI GDGCHC 1 cut(s) 86
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 1 cut(s) 339
MseI TTAA 5 cut(s) 66, 125, 131, 282, 408
MspI CCGG 4 cut(s) 29, 120, 167, 200
MspR9I CCNGG 1 cut(s) 121
MwoI GCNNNNNNNGC 2 cut(s) 254, 263
NciI CCSGG 1 cut(s) 121
NdeII GATC 2 cut(s) 153, 325
NlaIII CATG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 100
PfeI GAWTC 3 cut(s) 190, 196, 366
PflFI GACNNNGTC 1 cut(s) 13
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 203
PsyI GACNNNGTC 1 cut(s) 13
RsaI GTAC 2 cut(s) 61, 353
RsaNI GTAC 2 cut(s) 60, 352
SacI GAGCTC 1 cut(s) 86
SaqAI TTAA 5 cut(s) 66, 125, 131, 282, 408
Sau3AI GATC 2 cut(s) 153, 325
ScaI AGTACT 2 cut(s) 61, 353
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 121
SduI GDGCHC 1 cut(s) 86
SetI ASST 3 cut(s) 86, 143, 232
SsiI CCGC 3 cut(s) 5, 90, 248
SspMI CTAG 2 cut(s) 57, 221
SstI GAGCTC 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 119
TaiI ACGT 1 cut(s) 143
TaqII GACCGA 1 cut(s) 31
TatI WGTACW 2 cut(s) 59, 351
TfiI GAWTC 3 cut(s) 190, 196, 366
Tru1I TTAA 5 cut(s) 66, 125, 131, 282, 408
Tru9I TTAA 5 cut(s) 66, 125, 131, 282, 408
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspGWI ACGGA 1 cut(s) 26
Tth111I GACNNNGTC 1 cut(s) 13
VspI ATTAAT 1 cut(s) 66
XspI CTAG 2 cut(s) 57, 221
ZrmI AGTACT 2 cut(s) 61, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.