Rorug06G0352700

Oleosin 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0019674
Physical Location & Seq
Forward (+)
50165342 .. 50165870
529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0352700.1

Sequence Viewer

Length: 270 bp
ATGCACGACTACAATCTTGATTATCATCCTCTTGGCTCTTTACTCAACTGTTGCAAAGCTCTTATGGGAAAATTCCAATCTCTCACTTTGAAGCACATCTACAGGGAATGCAATATGGTAGTTGATTCTTTGGCCAAAAATAGCATTAATCATATGTATGGTTTGGTGGTTTTCGACCTTCCTCCTATTCATGCAGCTAGTGCCTTTCTTGAGGAAACTATCAGAGTTAGAAGATCCTCTGCTAGGCCTAATGTTGGGCCAATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

89

Amino Acids

10.06

Weight (kDa)

7.78

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 11 - 47 1.7e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35170
rosa_chinensis RchiOBHm_Chr6g0306771
rosa_multiflora Rmu_sc0042119.1_g000002 Rmu_sc0042162.1_g000001
rosa_roxburghii Rroxscaffold_7G00161470
rosa_rugosa Rorug06G0352700
rosa_samantha Rh6CG479000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 228
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 71
AfiI CCNNNNNNNGG 2 cut(s) 243, 254
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 2 cut(s) 59, 197
AluI AGCT 2 cut(s) 59, 197
AlwI GGATC 1 cut(s) 228
AoxI GGCC 3 cut(s) 132, 245, 257
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 1 cut(s) 71
AseI ATTAAT 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 134
BarI GAAGNNNNNNTAC 2 cut(s) 83, 115
BbvI GCAGC 1 cut(s) 206
BfaI CTAG 2 cut(s) 198, 243
BfmI CTRYAG 1 cut(s) 100
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 24
Bsc4I CCNNNNNNNGG 2 cut(s) 243, 254
Bse8I GATNNNNATC 1 cut(s) 24
BseGI GGATG 1 cut(s) 25
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 243, 254
BseXI GCAGC 1 cut(s) 206
BshFI GGCC 3 cut(s) 134, 247, 259
BslI CCNNNNNNNGG 2 cut(s) 243, 254
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 3 cut(s) 134, 247, 259
Bsp143I GATC 1 cut(s) 233
BspANI GGCC 3 cut(s) 134, 247, 259
BspPI GGATC 1 cut(s) 228
BssMI GATC 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 200
BstENI CCTNNNNNAGG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 1 cut(s) 236
BstMBI GATC 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 3 cut(s) 134, 247, 259
BtsCI GGATG 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 257
CviAII CATG 1 cut(s) 191
CviJI RGCY 6 cut(s) 36, 59, 134, 197, 247, 259
CviKI_1 RGCY 6 cut(s) 36, 59, 134, 197, 247, 259
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 247
EcoNI CCTNNNNNAGG 1 cut(s) 241
FaeI CATG 1 cut(s) 194
FaiI YATR 6 cut(s) 65, 116, 153, 155, 159, 192
FatI CATG 1 cut(s) 190
FauNDI CATATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 2 cut(s) 198, 243
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 3 cut(s) 134, 247, 259
Hin1II CATG 1 cut(s) 194
HinfI GANTC 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 224
Hpy188III TCNNGA 2 cut(s) 17, 209
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 4 cut(s) 4, 54, 111, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
Hsp92II CATG 1 cut(s) 194
Kzo9I GATC 1 cut(s) 233
LpnPI CCDG 1 cut(s) 88
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 2 cut(s) 198, 243
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MboII GAAGA 1 cut(s) 243
MflI RGATCY 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 134
MnlI CCTC 4 cut(s) 39, 192, 205, 247
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeI CATATG 1 cut(s) 153
NdeII GATC 1 cut(s) 233
NlaIII CATG 1 cut(s) 194
PceI AGGCCT 1 cut(s) 247
PctI GAATGC 1 cut(s) 113
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 196
PshBI ATTAAT 1 cut(s) 147
PspPI GGNCC 1 cut(s) 257
PsuI RGATCY 1 cut(s) 233
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 1 cut(s) 233
Sau96I GGNCC 1 cut(s) 257
SetI ASST 3 cut(s) 61, 180, 199
SfcI CTRYAG 1 cut(s) 100
SgeI CNNG 8 cut(s) 17, 29, 44, 115, 203, 210, 221, 255
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 71
SseBI AGGCCT 1 cut(s) 247
SspMI CTAG 2 cut(s) 198, 243
StuI AGGCCT 1 cut(s) 247
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 71
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 179
VspI ATTAAT 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 241
XapI RAATTY 1 cut(s) 71
XspI CTAG 2 cut(s) 198, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.