Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0027766

Physical Location & Seq

Genomic Coordinates Forward (+)

27473137 .. 27473424

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGATGGGGCGGTCTAGTGGATCATCATGGAGACCTGCTGTTTCCAGCAGTCGTGAAGGATTTGGAAGAAGTGAGTCTGAATACCGTGTTCGCACAAACGATGCTAGTCCTGGAACAGGCCATAGAATTTCGAGTGGCCAAAGAAGTTCACCGGTTGAGTCATCCGACCCCACTCGTACCGGAGGACATAGTTCACAAATTAGAAACTATGATGAAACTGCCATTAGAGGCCTCGAGGGCCTGCAGTTAGACCATGAGGTGATCGAGAATCCATTAATTACTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

96

Amino Acids

10.36

Weight (kDa)

6.83

Isoelectric Point (pI)

73.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37860
rosa_multiflora	Rmu_sc0030798.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgeI	ACCGGT	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	4 cut(s)	118, 136, 229, 238
ApoI	RAATTY	1 cut(s)	126
AseI	ATTAAT	1 cut(s)	275
AsiGI	ACCGGT	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	141, 271
AvaI	CYCGRG	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	15, 105, 282
BfmI	CTRYAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	43
BglI	GCCNNNNNGGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	1 cut(s)	91
BsaI	GGTCTC	1 cut(s)	25
BsaWI	WCCGGW	2 cut(s)	151, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse118I	RCCGGY	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	116
BshFI	GGCC	4 cut(s)	120, 138, 231, 240
BshTI	ACCGGT	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	2 cut(s)	152, 180
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	1 cut(s)	25
BsnI	GGCC	4 cut(s)	120, 138, 231, 240
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	20, 261
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	4 cut(s)	120, 138, 231, 240
BspMAI	CTGCAG	1 cut(s)	246
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	2 cut(s)	20, 261
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	242
BstENI	CCTNNNNNAGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	161
BstKTI	GATC	2 cut(s)	23, 264
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	20, 261
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	1 cut(s)	109
BstSFI	CTRYAG	1 cut(s)	242
BsuRI	GGCC	4 cut(s)	120, 138, 231, 240
BtsCI	GGATG	1 cut(s)	161
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	1 cut(s)	242
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	177
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	2 cut(s)	27, 254
CviJI	RGCY	4 cut(s)	120, 138, 231, 240
CviKI_1	RGCY	4 cut(s)	120, 138, 231, 240
CviQI	GTAC	1 cut(s)	177
DpnI	GATC	2 cut(s)	22, 263
DpnII	GATC	2 cut(s)	20, 261
EaeI	YGGCCR	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	109
FaeI	CATG	2 cut(s)	30, 257
FaiI	YATR	5 cut(s)	28, 123, 189, 210, 255
FatI	CATG	2 cut(s)	26, 253
FokI	GGATG	1 cut(s)	148
FspBI	CTAG	3 cut(s)	15, 105, 282
HaeIII	GGCC	4 cut(s)	120, 138, 231, 240
HapII	CCGG	2 cut(s)	152, 180
Hin1II	CATG	2 cut(s)	30, 257
HinfI	GANTC	3 cut(s)	74, 158, 268
HpaII	CCGG	2 cut(s)	152, 180
HphI	GGTGA	2 cut(s)	141, 271
Hpy166II	GTNNAC	2 cut(s)	149, 194
Hpy188I	TCNGA	2 cut(s)	79, 166
Hpy188III	TCNNGA	2 cut(s)	53, 265
Hpy8I	GTNNAC	2 cut(s)	149, 194
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	86
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	30, 257
Kzo9I	GATC	2 cut(s)	20, 261
LpnPI	CCDG	8 cut(s)	48, 58, 96, 102, 123, 165, 193, 254
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	3 cut(s)	15, 105, 282
MalI	GATC	2 cut(s)	22, 263
MboI	GATC	2 cut(s)	20, 261
MboII	GAAGA	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	3 cut(s)	126, 198, 276
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	2 cut(s)	83, 167
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	5 cut(s)	176, 221, 229, 242, 250
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	1 cut(s)	275
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	2 cut(s)	152, 180
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	2 cut(s)	20, 261
NlaIII	CATG	2 cut(s)	30, 257
PaeR7I	CTCGAG	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	109
PinAI	ACCGGT	1 cut(s)	151
PleI	GAGTC	2 cut(s)	82, 166
PpsI	GAGTC	2 cut(s)	82, 166
PshBI	ATTAAT	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	246
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	275
Sau3AI	GATC	2 cut(s)	20, 261
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	2 cut(s)	83, 167
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	2 cut(s)	37, 261
SfaNI	GCATC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	242
SfiI	GGCCNNNNNGGCC	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	3 cut(s)	126, 198, 276
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	1 cut(s)	10
SspMI	CTAG	3 cut(s)	15, 105, 282
StuI	AGGCCT	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	86
TaqI	TCGA	3 cut(s)	131, 234, 264
TasI	AATT	3 cut(s)	126, 198, 276
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	228
VspI	ATTAAT	1 cut(s)	275
XagI	CCTNNNNNAGG	1 cut(s)	114
XapI	RAATTY	1 cut(s)	126
XhoI	CTCGAG	1 cut(s)	233
XspI	CTAG	3 cut(s)	15, 105, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.