Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030798.1

Orthogroup ID

OG0027766

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 247

Gene Structure 247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030798.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 247 bp

aaggagacctgctgtttccagcagtcgtgagggatttgtaaggagcgagtctgaacaccgtgttcgcacaaccgatgctagtcctggaacaggccacagaatttcgagtggccaaagaagttcaccggtcgagtcatcagaccctactcgtaccggaagacatagctcacaaattagaaactatgaaactgccattagaggccttgaaggcctgcagttagaccatgaggagaggatccattactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

81

Amino Acids

9.1

Weight (kDa)

9.91

Isoelectric Point (pI)

87.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0027766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37860
rosa_multiflora	Rmu_sc0030798.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	17
AclWI	GGATC	2 cut(s)	230, 243
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	100
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	90
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	207
AjnI	CCWGG	1 cut(s)	83
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
AlwI	GGATC	2 cut(s)	230, 243
AoxI	GGCC	4 cut(s)	92, 110, 200, 209
ApoI	RAATTY	1 cut(s)	100
AsiGI	ACCGGT	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	85
BfaI	CTAG	2 cut(s)	79, 245
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	17
BglI	GCCNNNNNGGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	164
BsaWI	WCCGGW	2 cut(s)	125, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse118I	RCCGGY	1 cut(s)	125
BseBI	CCWGG	1 cut(s)	85
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	243
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	4 cut(s)	94, 112, 202, 211
BshTI	ACCGGT	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	126, 154
BslI	CCNNNNNNNGG	1 cut(s)	90
BsnI	GGCC	4 cut(s)	94, 112, 202, 211
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	4 cut(s)	94, 112, 202, 211
BspLI	GGNNCC	1 cut(s)	237
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	230, 243
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	85
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	213
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	1 cut(s)	213
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuRI	GGCC	4 cut(s)	94, 112, 202, 211
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	1 cut(s)	225
CviJI	RGCY	5 cut(s)	94, 112, 166, 202, 211
CviKI_1	RGCY	5 cut(s)	94, 112, 166, 202, 211
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
EaeI	YGGCCR	1 cut(s)	110
Eco147I	AGGCCT	2 cut(s)	202, 211
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	83
FaeI	CATG	1 cut(s)	228
FaiI	YATR	3 cut(s)	163, 184, 226
FatI	CATG	1 cut(s)	224
FspBI	CTAG	2 cut(s)	79, 245
HaeIII	GGCC	4 cut(s)	94, 112, 202, 211
HapII	CCGG	2 cut(s)	126, 154
Hin1II	CATG	1 cut(s)	228
HinfI	GANTC	2 cut(s)	48, 132
HpaII	CCGG	2 cut(s)	126, 154
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	2 cut(s)	53, 140
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
Hsp92II	CATG	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	8 cut(s)	22, 32, 70, 76, 97, 139, 167, 225
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	2 cut(s)	79, 245
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	1 cut(s)	235
MlsI	TGGCCA	1 cut(s)	112
MluCI	AATT	2 cut(s)	100, 172
MluNI	TGGCCA	1 cut(s)	112
MlyI	GAGTC	2 cut(s)	57, 141
MnlI	CCTC	4 cut(s)	23, 192, 221, 226
Mox20I	TGGCCA	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	112
Msp20I	TGGCCA	1 cut(s)	112
MspI	CCGG	2 cut(s)	126, 154
MspR9I	CCNGG	1 cut(s)	85
MvaI	CCWGG	1 cut(s)	85
MwoI	GCNNNNNNNGC	1 cut(s)	208
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	228
NlaIV	GGNNCC	1 cut(s)	237
PceI	AGGCCT	2 cut(s)	202, 211
PfoI	TCCNGGA	1 cut(s)	83
PinAI	ACCGGT	1 cut(s)	125
PleI	GAGTC	2 cut(s)	56, 140
PpsI	GAGTC	2 cut(s)	56, 140
Psp6I	CCWGG	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
Sau3AI	GATC	1 cut(s)	235
SchI	GAGTC	2 cut(s)	57, 141
ScrFI	CCNGG	1 cut(s)	85
SetI	ASST	2 cut(s)	11, 168
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	213
SfiI	GGCCNNNNNGGCC	1 cut(s)	208
Sse9I	AATT	2 cut(s)	100, 172
SseBI	AGGCCT	2 cut(s)	202, 211
SspMI	CTAG	2 cut(s)	79, 245
StuI	AGGCCT	2 cut(s)	202, 211
StyD4I	CCNGG	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	105, 130
TasI	AATT	2 cut(s)	100, 172
TspDTI	ATGAA	1 cut(s)	199
XagI	CCTNNNNNAGG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	100
XspI	CTAG	2 cut(s)	79, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.