FvH4_3g02880
MADS Family

MADS-box transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017997
Physical Location & Seq
Forward (+)
1536971 .. 1537610
640 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02880.t1

Sequence Viewer

Length: 453 bp
ATGGGTAGCGGAAAGAAGAAAATTGACATAGAGCCGATCTCAGACTACCAGTCTCGCATGGTGGCTTTCACCAGGAGACGAACAGGTCTCTTCAAAAAAGCACAGAAGCTCGAAGACATATCTGGTTCATCCATTGCCATTGCTGTGATATCCGAGACCGGTCAACCTTACCTCCACGGCTCTCCTTCCTTGCTTGAACGAGCTCTTGCCTCCACCACCACTGCTGCCTCTTCCTCCACAGCTACTTCCACCACCACATTTGAAGCAACTGGCTCTTCCACCACTACCGCCGCTACGGGAACTTTTGAAGAACTCAAGGCTTTGGTGAACACTGAAGTTGAGGCTTGTACTAGTCCGGAAGAAAAAGAGCGTTTGAAAAGGAAATTGTTGGATTACATAAGCAGGCTGGATGAAAAACTTTGTGAAAGTGATCGATTTTCAACGAGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

151

Amino Acids

16.31

Weight (kDa)

7.74

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 12 - 57 2e-12 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017997)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02880
rosa_chinensis RchiOBHm_Chr5g0004451
rosa_laevigata RLG00000031227
rosa_multiflora Rmu_sc0000433.1_g000010 Rmu_sc0002453.1_g000004
rosa_roxburghii Rroxscaffold_1G00071100
rosa_rugosa Rorug04G0411700
rosa_samantha Rh5AG039100 Rh5BG038100 Rh5CG042300 Rh5DG037700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 355
AciI CCGC 3 cut(s) 9, 288, 291
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 1 cut(s) 349
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 6 cut(s) 94, 197, 263, 308, 376, 441
AhdI GACNNNNNGTC 1 cut(s) 49
AhlI ACTAGT 1 cut(s) 350
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 3 cut(s) 109, 203, 242
AluI AGCT 3 cut(s) 109, 203, 242
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 4 cut(s) 57, 70, 92, 149
Aor13HI TCCGGA 1 cut(s) 355
ApeKI GCWGC 1 cut(s) 224
AsiGI ACCGGT 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 61, 337
BanII GRGCYC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 193
BciT130I CCWGG 1 cut(s) 73
BcoDI GTCTC 4 cut(s) 57, 70, 92, 149
BcuI ACTAGT 1 cut(s) 350
BfaI CTAG 1 cut(s) 351
BisI GCNGC 2 cut(s) 225, 291
BlsI GCNGC 2 cut(s) 226, 292
Bme1390I CCNGG 1 cut(s) 73
BmeRI GACNNNNNGTC 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpuEI CTTGAG 1 cut(s) 299
Bsa29I ATCGAT 1 cut(s) 433
BsaI GGTCTC 2 cut(s) 92, 149
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 2 cut(s) 158, 355
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 49, 274
Bse3DI GCAATG 2 cut(s) 132, 138
BseAI TCCGGA 1 cut(s) 355
BseBI CCWGG 1 cut(s) 73
BseCI ATCGAT 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 2 cut(s) 128, 415
BseMI GCAATG 2 cut(s) 132, 138
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 2 cut(s) 49, 274
BseXI GCAGC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 159, 356
BsmAI GTCTC 4 cut(s) 57, 70, 92, 149
BsmBI CGTCTC 1 cut(s) 70
Bso31I GGTCTC 2 cut(s) 92, 149
Bsp1286I GDGCHC 1 cut(s) 205
Bsp13I TCCGGA 1 cut(s) 355
Bsp143I GATC 2 cut(s) 36, 430
BspACI CCGC 3 cut(s) 9, 288, 291
BspCNI CTCAG 1 cut(s) 53
BspDI ATCGAT 1 cut(s) 433
BspEI TCCGGA 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 280
BspTNI GGTCTC 2 cut(s) 92, 149
BsrDI GCAATG 2 cut(s) 132, 138
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 49, 274
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 36, 430
Bst2UI CCWGG 1 cut(s) 73
Bst6I CTCTTC 3 cut(s) 95, 235, 280
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 1 cut(s) 40
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 2 cut(s) 128, 415
BstKTI GATC 2 cut(s) 39, 433
BstMAI GTCTC 4 cut(s) 57, 70, 92, 149
BstMBI GATC 2 cut(s) 36, 430
BstNI CCWGG 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 120
Bsu15I ATCGAT 1 cut(s) 433
BsuTUI ATCGAT 1 cut(s) 433
BtgI CCRYGG 1 cut(s) 175
BtsCI GGATG 2 cut(s) 128, 415
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 330
Cac8I GCNNGC 1 cut(s) 404
Cfr10I RCCGGY 1 cut(s) 158
ClaI ATCGAT 1 cut(s) 433
Csp6I GTAC 1 cut(s) 348
CspAI ACCGGT 1 cut(s) 158
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 1 cut(s) 58
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 1 cut(s) 40
DpnI GATC 2 cut(s) 38, 432
DpnII GATC 2 cut(s) 36, 430
DrdI GACNNNNNNGTC 1 cut(s) 84
DriI GACNNNNNGTC 1 cut(s) 49
DseDI GACNNNNNNGTC 1 cut(s) 84
Eam1104I CTCTTC 3 cut(s) 95, 235, 280
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 3 cut(s) 95, 235, 280
Ecl136II GAGCTC 1 cut(s) 203
Eco24I GRGCYC 1 cut(s) 205
Eco31I GGTCTC 2 cut(s) 92, 149
Eco32I GATATC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 354
EcoICRI GAGCTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 71
EcoRV GATATC 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 1 cut(s) 61
FaiI YATR 4 cut(s) 29, 59, 119, 398
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 225, 291
FokI GGATG 2 cut(s) 115, 422
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 225, 291
FspBI CTAG 1 cut(s) 351
GluI GCNGC 2 cut(s) 225, 291
HapII CCGG 2 cut(s) 159, 356
Hin1II CATG 1 cut(s) 61
HincII GTYRAC 1 cut(s) 164
HindII GTYRAC 1 cut(s) 164
HpaII CCGG 2 cut(s) 159, 356
HphI GGTGA 2 cut(s) 61, 337
Hpy166II GTNNAC 2 cut(s) 164, 328
Hpy188I TCNGA 2 cut(s) 43, 154
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 2 cut(s) 164, 328
HpyAV CCTTC 1 cut(s) 195
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 355
Kzo9I GATC 2 cut(s) 36, 430
LguI GCTCTTC 1 cut(s) 280
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 351
MalI GATC 2 cut(s) 38, 432
MboI GATC 2 cut(s) 36, 430
MboII GAAGA 7 cut(s) 28, 82, 125, 222, 267, 320, 371
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 2 cut(s) 21, 383
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 6 cut(s) 182, 220, 238, 244, 334, 438
MroI TCCGGA 1 cut(s) 355
MslI CAYNNNNRTG 1 cut(s) 143
MspI CCGG 2 cut(s) 159, 356
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
NdeII GATC 2 cut(s) 36, 430
NlaIII CATG 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 280
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 2 cut(s) 226, 292
Psp124BI GAGCTC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 205
SapI GCTCTTC 1 cut(s) 280
SatI GCNGC 2 cut(s) 225, 291
Sau3AI GATC 2 cut(s) 36, 430
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 205
SetI ASST 6 cut(s) 88, 111, 169, 174, 205, 244
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SpeI ACTAGT 1 cut(s) 350
Sse9I AATT 2 cut(s) 21, 383
SsiI CCGC 3 cut(s) 9, 288, 291
SspMI CTAG 1 cut(s) 351
SstI GAGCTC 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 71
TaqI TCGA 2 cut(s) 111, 433
TasI AATT 2 cut(s) 21, 383
TatI WGTACW 1 cut(s) 347
TauI GCSGC 1 cut(s) 293
TscAI CASTG 2 cut(s) 226, 337
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 2 cut(s) 117, 426
TspRI CASTG 2 cut(s) 226, 337
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.