FvH4_3g09450

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
5506018 .. 5506458
441 bp
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UTR
Exon/CDS
Intron
FvH4_3g09450.t1

Sequence Viewer

Length: 150 bp
GCTTACAGGGAAGAGTTGGAGCGAAAAGTTGAGCATTTGAAGCAAGAGAACGCAAGACGGAAAAAAGAGCTAGAGACCAGTATTGCAGCAGCTTCTGGACAGTTATCCATCACGCACAACCATCGCAGATCCTCAAGTGCTCTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

50

Amino Acids

5.68

Weight (kDa)

9.81

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021873)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17770 AT2G17770 AT2G17770
fragaria_vesca FvH4_3g09450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 123
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 2 cut(s) 70, 92
AluI AGCT 2 cut(s) 70, 92
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 86, 89
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 98, 101
BccI CCATC 2 cut(s) 116, 129
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 71
BisI GCNGC 2 cut(s) 87, 90
BlsI GCNGC 2 cut(s) 88, 91
BpuEI CTTGAG 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 2 cut(s) 98, 101
BsiHKAI GWGCWC 1 cut(s) 142
BsmAI GTCTC 1 cut(s) 68
Bso31I GGTCTC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 128
BspPI GGATC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 68
BsrI ACTGG 1 cut(s) 78
BssMI GATC 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 6
BstKTI GATC 1 cut(s) 131
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 98, 101
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 107
CaiI CAGNNNCTG 1 cut(s) 95
CviJI RGCY 2 cut(s) 70, 92
CviKI_1 RGCY 2 cut(s) 70, 92
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco31I GGTCTC 1 cut(s) 68
Fnu4HI GCNGC 2 cut(s) 87, 90
Fsp4HI GCNGC 2 cut(s) 87, 90
FspBI CTAG 1 cut(s) 71
FspEI CC 7 cut(s) 2, 43, 81, 91, 121, 134, 145
GluI GCNGC 2 cut(s) 87, 90
Hpy188III TCNNGA 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 2 cut(s) 81, 91
Lsp1109I GCAGC 2 cut(s) 98, 101
MaeI CTAG 1 cut(s) 71
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 1 cut(s) 23
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 142
MnlI CCTC 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 40
NdeII GATC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 88, 91
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 1 cut(s) 128
SatI GCNGC 2 cut(s) 87, 90
Sau3AI GATC 1 cut(s) 128
SduI GDGCHC 1 cut(s) 142
SetI ASST 2 cut(s) 72, 94
SgeI CNNG 7 cut(s) 19, 56, 66, 83, 90, 108, 124
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SspMI CTAG 1 cut(s) 71
TaaI ACNGT 1 cut(s) 102
TseI GCWGC 2 cut(s) 86, 89
TspGWI ACGGA 1 cut(s) 73
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.