Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0024063

Physical Location & Seq

Genomic Coordinates Reverse (-)

6174003 .. 6174572

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGGCTTCATATTAAAAAAGGCCACAGGTATTGGCCCAAATGTTATCCAGAACTATCACGAGTCCTGGACCAAAAATCTCGTTGGGCTCAAACACCTAGACCCAGAATATTTGCAGTCGAACCAACTAACAGAAAAAAGTGATGTCTACAGCTTTGGAGTTGTCCTAGTGGAGCTACTTACAAGCAAAGTGGCAGTTTCTAATGATAGATGCTTAACAAGCATCTTTGTTTCTTGCATGGATGAAGATTGCTTAAAAGAAATTCTTGATGATGCCATAGTGAATGAGGGAAACATTGAGACAGCAGTAAGCGTGGCCAATCTCGCAAAAAGATGTTTGAGGTTAAAAGGGGAGGAAAGGCCTACCATGAAAGAAGTTGCCATGGAGCTAGAGGGAATGGCAATTATGGCAAAGCATCCGTGGGGAAAGAATGCTAAATCTGTCCGGAAGAGAATGAGTACCTGCTTGACATGGATGCTAGAGGAGGTGATCACAATTCCAGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EGF_CA GUB_WAK_bind Pkinase Pkinase_Tyr WAK

Protein Analysis

170

Amino Acids

18.9

Weight (kDa)

5.95

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	18 - 130	2e-11	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	23 - 126	5.1e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0024063)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g10500
rosa_laevigata	RLG00000023085
rosa_multiflora	Rmu_sc0011408.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	470
AccI	GTMKAC	1 cut(s)	147
AccIII	TCCGGA	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	261
AfaI	GTAC	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	3 cut(s)	153, 175, 388
AluI	AGCT	3 cut(s)	153, 175, 388
Alw26I	GTCTC	1 cut(s)	293
Aor13HI	TCCGGA	1 cut(s)	444
AoxI	GGCC	4 cut(s)	21, 34, 315, 359
ApoI	RAATTY	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	35, 69
AsuHPI	GGTGA	1 cut(s)	499
AvaII	GGWCC	1 cut(s)	69
BalI	TGGCCA	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	90
BauI	CACGAG	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	67
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	4 cut(s)	98, 167, 389, 479
BfmI	CTRYAG	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	2 cut(s)	35, 69
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	5 cut(s)	200, 231, 262, 424, 465
BsaJI	CCNNGG	2 cut(s)	381, 419
BsaWI	WCCGGW	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	500
BseAI	TCCGGA	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	2 cut(s)	381, 419
BseGI	GGATG	3 cut(s)	247, 415, 480
BseNI	ACTGG	1 cut(s)	500
BseRI	GAGGAG	1 cut(s)	497
BshFI	GGCC	4 cut(s)	23, 36, 317, 361
BsiSI	CCGG	1 cut(s)	445
BsmAI	GTCTC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	4 cut(s)	23, 36, 317, 361
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	1 cut(s)	489
Bsp19I	CCATGG	1 cut(s)	381
BspANI	GGCC	4 cut(s)	23, 36, 317, 361
BspEI	TCCGGA	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	381, 419
BssMI	GATC	1 cut(s)	489
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	443
BstDSI	CCRYGG	2 cut(s)	381, 419
BstF5I	GGATG	3 cut(s)	247, 415, 480
BstKTI	GATC	1 cut(s)	492
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 323, 407
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	148
BsuRI	GGCC	4 cut(s)	23, 36, 317, 361
BtgI	CCRYGG	2 cut(s)	381, 419
BtsCI	GGATG	3 cut(s)	247, 415, 480
BtsIMutI	CAGTG	1 cut(s)	507
BveI	ACCTGC	1 cut(s)	470
Cfr13I	GGNCC	2 cut(s)	35, 69
Csp6I	GTAC	1 cut(s)	459
CspCI	CAANNNNNGTGG	5 cut(s)	13, 48, 171, 206, 483
CviAII	CATG	4 cut(s)	238, 367, 382, 471
CviJI	RGCY	9 cut(s)	6, 23, 36, 88, 153, 175, 317, 361, 388
CviKI_1	RGCY	9 cut(s)	6, 23, 36, 88, 153, 175, 317, 361, 388
CviQI	GTAC	1 cut(s)	459
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Eco130I	CCWWGG	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	4 cut(s)	241, 370, 385, 474
FaiI	YATR	7 cut(s)	11, 239, 278, 368, 383, 407, 472
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FatI	CATG	4 cut(s)	237, 366, 381, 470
FbaI	TGATCA	1 cut(s)	489
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	3 cut(s)	254, 402, 487
FriOI	GRGCYC	1 cut(s)	90
FspBI	CTAG	4 cut(s)	98, 167, 389, 479
HaeIII	GGCC	4 cut(s)	23, 36, 317, 361
HapII	CCGG	1 cut(s)	445
Hin1II	CATG	4 cut(s)	241, 370, 385, 474
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	4 cut(s)	49, 59, 266, 445
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	115, 237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 323, 407
Hsp92II	CATG	4 cut(s)	241, 370, 385, 474
Kpn2I	TCCGGA	1 cut(s)	444
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	1 cut(s)	489
LmnI	GCTCC	2 cut(s)	172, 385
LpnPI	CCDG	7 cut(s)	12, 52, 62, 79, 117, 458, 475
LweI	GCATC	5 cut(s)	200, 231, 262, 424, 465
MaeI	CTAG	4 cut(s)	98, 167, 389, 479
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	2 cut(s)	257, 460
MhlI	GDGCHC	1 cut(s)	90
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	3 cut(s)	261, 402, 495
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	6 cut(s)	280, 333, 346, 385, 475, 478
Mox20I	TGGCCA	1 cut(s)	317
MroI	TCCGGA	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	5 cut(s)	14, 215, 254, 344, 508
Msp20I	TGGCCA	1 cut(s)	317
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	3 cut(s)	219, 323, 407
NcoI	CCATGG	1 cut(s)	381
NdeII	GATC	1 cut(s)	489
NlaIII	CATG	4 cut(s)	241, 370, 385, 474
PceI	AGGCCT	1 cut(s)	361
PctI	GAATGC	1 cut(s)	436
PfoI	TCCNGGA	1 cut(s)	65
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspPI	GGNCC	2 cut(s)	35, 69
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
SaqAI	TTAA	5 cut(s)	14, 215, 254, 344, 508
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	2 cut(s)	35, 69
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	8 cut(s)	31, 99, 155, 177, 344, 390, 464, 489
SfaNI	GCATC	5 cut(s)	200, 231, 262, 424, 465
SfcI	CTRYAG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	69
Sse9I	AATT	3 cut(s)	261, 402, 495
SseBI	AGGCCT	1 cut(s)	361
SspI	AATATT	1 cut(s)	110
SspMI	CTAG	4 cut(s)	98, 167, 389, 479
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	381
TaqI	TCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	261, 402, 495
Tru1I	TTAA	5 cut(s)	14, 215, 254, 344, 508
Tru9I	TTAA	5 cut(s)	14, 215, 254, 344, 508
TscAI	CASTG	1 cut(s)	507
TspDTI	ATGAA	2 cut(s)	258, 383
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	507
VpaK11BI	GGWCC	1 cut(s)	69
XapI	RAATTY	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	4 cut(s)	98, 167, 389, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.