FvH4_3g13830

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
8284480 .. 8286521
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13830.t1

Sequence Viewer

Length: 1509 bp
ATGGTTTTATCCCAGAAATTTTGGCAAATGATGAAGAGGAAGACACCAAGTTCGTTCCTCTTCATCGTCTCATTTCTTTCCATCATCGTCGTCATCAATGGCGATGGGTCTCTCTTTGTTAACTCAAACCCTAGTCATCATGACGATGATAATAATTCCATAACTTTCGACCTAATCCACAGGGACTCTCCCAAATGGCCTGGGAATCAAGACAAGCCTCCCAAAAGCCAAAGAGAAGTCATCAAAGAGCGTCACCTCCGTGACATTAAACGCCAGGAAGAGGTCATATACCCGCTACGACACGACGGCATTAGATTGAAGATGGAGTCGGGTTCGGATCTGGATCTTGGGGGGTACCTGGCGGAAGTATACATCGGAACGCCTTCCCGGAAATTGTCGATGCTTGTAGATACAGGGAGTGACCTCACATGGGTCAATTGCAGATTTGACTGTAAAGATTGTCATCATAAGCGAAACAGAGATCAATTTTATGGAAACCAACCAAGATATTATGCAGGACAAGGTCTAAAGAGCGTCGATGTATTTCAGGCCCATCGATCTTCGAGTTTCAAGCCTATACAATGCGGTACTCCTCAGTGCAGAACTGGGATGAAGGAAATGGGGTCTGAGCCTTTCTGCCCTACTCCATCGTCGCATTGCATGTATAACATGAGTTACTTAGGAGGCAGCGTTGCATCAGGTTTTTTCAGCGAAGAGATTGTAAGAGCACCCCTCACTACAACCGGAAGGTCTCTAAAGCTGAGACATATGGTCGTTGGCTGCACAGAGACGGTCGTTAAGGACCTGAAATCTGATGGCATATTGGCTTTAGGGTTTTCCTTTGGCTCCTGGGCAGATAAAGCTACTAGGAACTTCGGTCCCAAGTTCTCTTATTGCCTCATGGATTTCGCCAGCCACATGAACAAGTCAAGTTACATCACATTTGGTGCCAACAACAAAATCGCATCGCACGCCCCTATGATACAAACCCGTTGTTATGTGCCTCTCCCTGGTCATTATAGCGTGGAAATATCAGGCATATCAGTTGGGGGGAAAATGCTAAACATACCAAAGTATATATGGACATTTGATTGGGTTACTGGTGGAGGAACAATTATTGACTCAGGCACAAGCAACGCATGGCTAGCAGAGCCAGCTTACGAGGCTGTTATGTGTGAATACAGAAAGGTGTTCTCAAAATACGAAAGACTAAAAACAGACCCGGTAGAGATCCCGTTTGAGTTGTGCTTCAAGTCTCCACCAAAAATGGACTGGTCTTCGGTGCCAAAACTTGCGTATCATTTTGCAGATGGAGCTGTATTTGAGCCACTGGTGTCGAACTTCATTGCAGAGATTAATCAACCCAGGACTGGGGAAAGATGTGTTTCGATTGTCAAGTCTAACACTTACACTGGCTCTCTGATTGGCAATGTAATGATGCGGAACTATCTGTGGGAGTTTAATATAGCGGATGAGACAGTCGGTTTCACTCCTTCCAATTGCGCCTAG

Protein Analysis

503

Amino Acids

56.49

Weight (kDa)

8.52

Isoelectric Point (pI)

36.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 119 - 316 1.1e-33 Xylanase inhibitor N-terminal
Asp PF00026 119 - 497 3.5e-14 Eukaryotic aspartyl protease
TAXi_C PF14541 339 - 497 3.6e-27 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018817)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13830
rosa_chinensis RchiOBHm_Chr5g0023011
rosa_laevigata RLG00000032690
rosa_rugosa Rorug05G0076500
rosa_samantha Rh5AG162700 Rh5BG161900 Rh5CG176600 Rh5DG163300
rosa_wichuraiana Rw5G014660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 354
AccB1I GGYRCC 3 cut(s) 354, 947, 1282
AccI GTMKAC 1 cut(s) 369
AciI CCGC 5 cut(s) 293, 362, 585, 1441, 1469
AclWI GGATC 3 cut(s) 345, 351, 1225
AcsI RAATTY 1 cut(s) 17
AfaI GTAC 2 cut(s) 356, 589
AfiI CCNNNNNNNGG 5 cut(s) 280, 430, 1010, 1370, 1371
AgsI TTSAA 3 cut(s) 319, 571, 1252
AhdI GACNNNNNGTC 1 cut(s) 770
AjnI CCWGG 6 cut(s) 199, 273, 357, 848, 1009, 1364
AleI CACNNNNGTG 1 cut(s) 258
AluBI AGCT 4 cut(s) 760, 863, 1157, 1316
AluI AGCT 4 cut(s) 760, 863, 1157, 1316
Alw21I GWGCWC 1 cut(s) 730
Alw26I GTCTC 7 cut(s) 73, 114, 756, 757, 782, 1260, 1469
AlwI GGATC 3 cut(s) 345, 351, 1225
AoxI GGCC 2 cut(s) 197, 549
ApeKI GCWGC 2 cut(s) 687, 780
ApoI RAATTY 1 cut(s) 17
ArsI GACNNNNNNTTYG 2 cut(s) 34, 66
AseI ATTAAT 1 cut(s) 1356
Asp700I GAANNNNTTC 1 cut(s) 382
Asp718I GGTACC 1 cut(s) 354
AspLEI GCGC 1 cut(s) 1505
AspS9I GGNCC 3 cut(s) 550, 802, 878
AsuC2I CCSGG 2 cut(s) 388, 1223
AsuHPI GGTGA 1 cut(s) 245
AsuNHI GCTAGC 1 cut(s) 1144
AvaII GGWCC 2 cut(s) 802, 878
BaeI ACNNNNGTAYC 2 cut(s) 1280, 1313
BanI GGYRCC 3 cut(s) 354, 947, 1282
BbsI GAAGAC 2 cut(s) 47, 1269
Bbv12I GWGCWC 1 cut(s) 730
BbvI GCAGC 2 cut(s) 699, 767
BccI CCATC 7 cut(s) 89, 98, 316, 561, 655, 809, 1304
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 6 cut(s) 201, 275, 359, 850, 1011, 1366
BcnI CCSGG 2 cut(s) 388, 1223
BcoDI GTCTC 7 cut(s) 73, 114, 756, 757, 782, 1260, 1469
BfaI CTAG 4 cut(s) 132, 867, 1145, 1507
BisI GCNGC 2 cut(s) 688, 781
BlsI GCNGC 2 cut(s) 689, 782
Bme1390I CCNGG 8 cut(s) 201, 275, 359, 388, 850, 1011, 1223, 1366
Bme18I GGWCC 2 cut(s) 802, 878
BmeRI GACNNNNNGTC 1 cut(s) 770
BmgT120I GGNCC 3 cut(s) 550, 802, 878
BmiI GGNNCC 5 cut(s) 356, 847, 880, 949, 1284
BmrFI CCNGG 8 cut(s) 201, 275, 359, 388, 850, 1011, 1223, 1366
BmrI ACTGGG 2 cut(s) 615, 1380
BmsI GCATC 4 cut(s) 390, 704, 974, 1428
BmtI GCTAGC 1 cut(s) 1148
BmuI ACTGGG 2 cut(s) 615, 1380
BpiI GAAGAC 2 cut(s) 47, 1269
BplI GAGNNNNNCTC 2 cut(s) 717, 749
BpuMI CCSGG 2 cut(s) 388, 1223
Bsa29I ATCGAT 1 cut(s) 556
BsaBI GATNNNNATC 2 cut(s) 342, 462
BsaI GGTCTC 2 cut(s) 114, 756
BsaJI CCNNGG 4 cut(s) 200, 849, 1009, 1364
BsaWI WCCGGW 1 cut(s) 743
BsaXI ACNNNNNCTCC 2 cut(s) 675, 705
Bsc4I CCNNNNNNNGG 5 cut(s) 280, 430, 1010, 1370, 1371
Bse1I ACTGG 6 cut(s) 610, 1105, 1277, 1335, 1375, 1417
Bse3DI GCAATG 3 cut(s) 655, 1344, 1435
Bse8I GATNNNNATC 2 cut(s) 342, 462
BseBI CCWGG 6 cut(s) 201, 275, 359, 850, 1011, 1366
BseCI ATCGAT 1 cut(s) 556
BseDI CCNNGG 4 cut(s) 200, 849, 1009, 1364
BseGI GGATG 2 cut(s) 615, 1477
BseJI GATNNNNATC 2 cut(s) 342, 462
BseLI CCNNNNNNNGG 5 cut(s) 280, 430, 1010, 1370, 1371
BseMI GCAATG 3 cut(s) 655, 1344, 1435
BseMII CTCAG 4 cut(s) 608, 618, 752, 1137
BseNI ACTGG 6 cut(s) 610, 1105, 1277, 1335, 1375, 1417
BseRI GAGGAG 1 cut(s) 582
BseXI GCAGC 2 cut(s) 699, 767
BsgI GTGCAG 2 cut(s) 619, 766
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 2 cut(s) 199, 551
BshNI GGYRCC 3 cut(s) 354, 947, 1282
BshVI ATCGAT 1 cut(s) 556
BsiEI CGRYCG 1 cut(s) 795
BsiHKAI GWGCWC 1 cut(s) 730
BsiSI CCGG 3 cut(s) 388, 744, 1223
BslFI GGGAC 2 cut(s) 197, 864
BslI CCNNNNNNNGG 5 cut(s) 280, 430, 1010, 1370, 1371
BsmAI GTCTC 7 cut(s) 73, 114, 756, 757, 782, 1260, 1469
BsmBI CGTCTC 2 cut(s) 73, 782
BsmFI GGGAC 2 cut(s) 197, 864
BsnI GGCC 2 cut(s) 199, 551
Bso31I GGTCTC 2 cut(s) 114, 756
Bsp1286I GDGCHC 1 cut(s) 730
Bsp143I GATC 5 cut(s) 337, 343, 481, 557, 1230
BspACI CCGC 5 cut(s) 293, 362, 585, 1441, 1469
BspANI GGCC 2 cut(s) 199, 551
BspCNI CTCAG 4 cut(s) 607, 619, 753, 1136
BspDI ATCGAT 1 cut(s) 556
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 5 cut(s) 356, 847, 880, 949, 1284
BspOI GCTAGC 1 cut(s) 1148
BspPI GGATC 3 cut(s) 345, 351, 1225
BspT107I GGYRCC 3 cut(s) 354, 947, 1282
BspTNI GGTCTC 2 cut(s) 114, 756
BsrDI GCAATG 3 cut(s) 655, 1344, 1435
BsrI ACTGG 6 cut(s) 610, 1105, 1277, 1335, 1375, 1417
BssECI CCNNGG 4 cut(s) 200, 849, 1009, 1364
BssMI GATC 5 cut(s) 337, 343, 481, 557, 1230
BssNAI GTATAC 1 cut(s) 370
Bst1107I GTATAC 1 cut(s) 370
Bst2UI CCWGG 6 cut(s) 201, 275, 359, 850, 1011, 1366
Bst4CI ACNGT 3 cut(s) 452, 793, 1480
Bst6I CTCTTC 4 cut(s) 29, 65, 273, 708
BstC8I GCNNGC 4 cut(s) 913, 972, 1146, 1155
BstDEI CTNAG 5 cut(s) 594, 627, 679, 761, 1123
BstF5I GGATG 2 cut(s) 615, 1477
BstHHI GCGC 1 cut(s) 1505
BstKTI GATC 5 cut(s) 340, 346, 484, 560, 1233
BstMAI GTCTC 7 cut(s) 73, 114, 756, 757, 782, 1260, 1469
BstMBI GATC 5 cut(s) 337, 343, 481, 557, 1230
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 7 cut(s) 860, 971, 1145, 1150, 1154, 1163, 1313
BstNI CCWGG 6 cut(s) 201, 275, 359, 850, 1011, 1366
BstNSI RCATGY 1 cut(s) 664
BstSCI CCNGG 8 cut(s) 199, 273, 357, 386, 848, 1009, 1221, 1364
BstV1I GCAGC 2 cut(s) 699, 767
BstV2I GAAGAC 2 cut(s) 47, 1269
BstX2I RGATCY 3 cut(s) 337, 343, 1230
BstYI RGATCY 3 cut(s) 337, 343, 1230
BstZ17I GTATAC 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 556
BsuRI GGCC 2 cut(s) 199, 551
BsuTUI ATCGAT 1 cut(s) 556
BtgZI GCGATG 2 cut(s) 117, 951
BtsCI GGATG 2 cut(s) 615, 1477
BtsIMutI CAGTG 3 cut(s) 602, 1328, 1410
Cac8I GCNNGC 4 cut(s) 913, 972, 1146, 1155
CciI TCATGA 1 cut(s) 139
CfoI GCGC 1 cut(s) 1505
Cfr13I GGNCC 3 cut(s) 550, 802, 878
ClaI ATCGAT 1 cut(s) 556
CseI GACGC 2 cut(s) 239, 523
Csp6I GTAC 2 cut(s) 355, 588
CviAII CATG 7 cut(s) 140, 429, 661, 670, 901, 919, 1140
CviQI GTAC 2 cut(s) 355, 588
DdeI CTNAG 5 cut(s) 594, 627, 679, 761, 1123
DpnI GATC 5 cut(s) 339, 345, 483, 559, 1232
DpnII GATC 5 cut(s) 337, 343, 481, 557, 1230
DriI GACNNNNNGTC 1 cut(s) 770
Eam1104I CTCTTC 4 cut(s) 29, 65, 273, 708
Eam1105I GACNNNNNGTC 1 cut(s) 770
EarI CTCTTC 4 cut(s) 29, 65, 273, 708
EciI GGCGGA 1 cut(s) 377
Eco31I GGTCTC 2 cut(s) 114, 756
Eco47I GGWCC 2 cut(s) 802, 878
EcoO109I RGGNCCY 1 cut(s) 802
EcoRII CCWGG 6 cut(s) 199, 273, 357, 848, 1009, 1364
Esp3I CGTCTC 2 cut(s) 73, 782
FaeI CATG 7 cut(s) 143, 432, 664, 673, 904, 922, 1143
FaqI GGGAC 2 cut(s) 197, 864
FatI CATG 7 cut(s) 139, 428, 660, 669, 900, 918, 1139
FauI CCCGC 1 cut(s) 300
FauNDI CATATG 1 cut(s) 768
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 2 cut(s) 688, 781
FokI GGATG 2 cut(s) 622, 1484
Fsp4HI GCNGC 2 cut(s) 688, 781
FspBI CTAG 4 cut(s) 132, 867, 1145, 1507
GlaI GCGC 1 cut(s) 1504
GluI GCNGC 2 cut(s) 688, 781
HaeIII GGCC 2 cut(s) 199, 551
HapII CCGG 3 cut(s) 388, 744, 1223
HgaI GACGC 2 cut(s) 239, 523
HhaI GCGC 1 cut(s) 1505
Hin1II CATG 7 cut(s) 143, 432, 664, 673, 904, 922, 1143
Hin6I GCGC 1 cut(s) 1503
HinP1I GCGC 1 cut(s) 1503
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 4 cut(s) 185, 205, 326, 1121
HpaI GTTAAC 1 cut(s) 121
HpaII CCGG 3 cut(s) 388, 744, 1223
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 121, 370
Hpy188I TCNGA 5 cut(s) 337, 377, 628, 814, 1422
Hpy188III TCNNGA 3 cut(s) 140, 209, 341
Hpy8I GTNNAC 2 cut(s) 121, 370
Hpy99I CGWCG 4 cut(s) 92, 308, 539, 655
HpyAV CCTTC 4 cut(s) 393, 607, 741, 1503
HpyCH4III ACNGT 3 cut(s) 452, 793, 1480
HpyCH4V TGCA 8 cut(s) 441, 515, 600, 660, 695, 783, 1307, 1349
HpyF10VI GCNNNNNNNGC 7 cut(s) 860, 971, 1145, 1150, 1154, 1163, 1313
HpyF3I CTNAG 5 cut(s) 594, 627, 679, 761, 1123
Hsp92II CATG 7 cut(s) 143, 432, 664, 673, 904, 922, 1143
HspAI GCGC 1 cut(s) 1503
KpnI GGTACC 1 cut(s) 358
KspAI GTTAAC 1 cut(s) 121
Kzo9I GATC 5 cut(s) 337, 343, 481, 557, 1230
LmnI GCTCC 2 cut(s) 851, 1313
Lsp1109I GCAGC 2 cut(s) 699, 767
LweI GCATC 4 cut(s) 390, 704, 974, 1428
MaeI CTAG 4 cut(s) 132, 867, 1145, 1507
MaeIII GTNAC 6 cut(s) 251, 260, 419, 674, 932, 1096
MalI GATC 5 cut(s) 339, 345, 483, 559, 1232
MboI GATC 5 cut(s) 337, 343, 481, 557, 1230
MboII GAAGA 8 cut(s) 46, 52, 52, 290, 331, 552, 725, 1269
MfeI CAATTG 2 cut(s) 436, 1498
MflI RGATCY 3 cut(s) 337, 343, 1230
MhlI GDGCHC 1 cut(s) 730
MluCI AATT 7 cut(s) 17, 154, 392, 436, 485, 1113, 1498
MlyI GAGTC 3 cut(s) 179, 335, 1115
MroXI GAANNNNTTC 1 cut(s) 382
MseI TTAA 5 cut(s) 120, 267, 798, 1356, 1461
MslI CAYNNNNRTG 2 cut(s) 144, 258
MspI CCGG 3 cut(s) 388, 744, 1223
MspR9I CCNGG 8 cut(s) 201, 275, 359, 388, 850, 1011, 1223, 1366
MunI CAATTG 2 cut(s) 436, 1498
MvaI CCWGG 6 cut(s) 201, 275, 359, 850, 1011, 1366
MwoI GCNNNNNNNGC 7 cut(s) 860, 971, 1145, 1150, 1154, 1163, 1313
NciI CCSGG 2 cut(s) 388, 1223
NdeI CATATG 1 cut(s) 768
NdeII GATC 5 cut(s) 337, 343, 481, 557, 1230
NheI GCTAGC 1 cut(s) 1144
NlaIII CATG 7 cut(s) 143, 432, 664, 673, 904, 922, 1143
NlaIV GGNNCC 5 cut(s) 356, 847, 880, 949, 1284
NmuCI GTSAC 3 cut(s) 251, 260, 419
NspI RCATGY 1 cut(s) 664
OliI CACNNNNGTG 1 cut(s) 258
PagI TCATGA 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 205
PflFI GACNNNGTC 1 cut(s) 522
PfoI TCCNGGA 1 cut(s) 386
PkrI GCNGC 2 cut(s) 689, 782
PleI GAGTC 3 cut(s) 179, 334, 1115
PpsI GAGTC 3 cut(s) 179, 334, 1115
PpuMI RGGWCCY 1 cut(s) 802
PshBI ATTAAT 1 cut(s) 1356
Psp5II RGGWCCY 1 cut(s) 802
Psp6I CCWGG 6 cut(s) 199, 273, 357, 848, 1009, 1364
PspGI CCWGG 6 cut(s) 199, 273, 357, 848, 1009, 1364
PspN4I GGNNCC 5 cut(s) 356, 847, 880, 949, 1284
PspPI GGNCC 3 cut(s) 550, 802, 878
PspPPI RGGWCCY 1 cut(s) 802
PsuI RGATCY 3 cut(s) 337, 343, 1230
PsyI GACNNNGTC 1 cut(s) 522
RsaI GTAC 2 cut(s) 356, 589
RsaNI GTAC 2 cut(s) 355, 588
RseI CAYNNNNRTG 2 cut(s) 144, 258
SaqAI TTAA 5 cut(s) 120, 267, 798, 1356, 1461
SatI GCNGC 2 cut(s) 688, 781
Sau3AI GATC 5 cut(s) 337, 343, 481, 557, 1230
Sau96I GGNCC 3 cut(s) 550, 802, 878
SchI GAGTC 3 cut(s) 179, 335, 1115
ScrFI CCNGG 8 cut(s) 201, 275, 359, 388, 850, 1011, 1223, 1366
SduI GDGCHC 1 cut(s) 730
SfaNI GCATC 4 cut(s) 390, 704, 974, 1428
SinI GGWCC 2 cut(s) 802, 878
SmiMI CAYNNNNRTG 2 cut(s) 144, 258
Sse9I AATT 7 cut(s) 17, 154, 392, 436, 485, 1113, 1498
SsiI CCGC 5 cut(s) 293, 362, 585, 1441, 1469
SspMI CTAG 4 cut(s) 132, 867, 1145, 1507
StyD4I CCNGG 8 cut(s) 199, 273, 357, 386, 848, 1009, 1221, 1364
TaaI ACNGT 3 cut(s) 452, 793, 1480
TaqI TCGA 7 cut(s) 168, 398, 537, 556, 563, 1337, 1388
TaqII GACCGA 1 cut(s) 866
TasI AATT 7 cut(s) 17, 154, 392, 436, 485, 1113, 1498
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 5 cut(s) 120, 267, 798, 1356, 1461
Tru9I TTAA 5 cut(s) 120, 267, 798, 1356, 1461
TscAI CASTG 3 cut(s) 602, 1335, 1417
TseFI GTSAC 3 cut(s) 251, 260, 419
TseI GCWGC 2 cut(s) 687, 780
Tsp45I GTSAC 3 cut(s) 251, 260, 419
TspDTI ATGAA 5 cut(s) 47, 52, 626, 935, 1333
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 3 cut(s) 602, 1335, 1417
Tth111I GACNNNGTC 1 cut(s) 522
VpaK11BI GGWCC 2 cut(s) 802, 878
VspI ATTAAT 1 cut(s) 1356
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 664
XcmI CCANNNNNNNNNTGG 2 cut(s) 1077, 1269
XmiI GTMKAC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 382
XspI CTAG 4 cut(s) 132, 867, 1145, 1507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.