Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0018817

Physical Location & Seq

Genomic Coordinates Forward (+)

16844627 .. 16846695

Gene Structure 2069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG161900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGTTTCATCCCAGAAATTTTGGCAAATGATGAAGGGGAAGACACCCAGTTCGTTCCTCTTCATCTTCTCATTGCTTTCCATCATCGTCATCAATGGAGATGGGTCTCTCTTTGTTAACTCAAACCCTGATCACGACGATGAAGGTTCCATGACTTTCGAGCTAATCCACAGGGACTCTCCCAAGTGGCATGGGAACCATCAAAAGCCTCCCAAAAGCCAAAGACAACTCATCATAGAGCGTCACCTCCGTGATATTAATCGCCAAGAGGTTATATACCCGCTACGAAAGGACGGCATTAAATTAAAGATGGAGTCGGGTGCAGATTTGGGTACTGGGGAGTACCTGGCTGAAGTAAAAATTGGAACCCCTCCCAAGAAATACACGTTGGTTTTAGATACAGGGAGTGACCTCACATGGGTCAATTGCAGATATGACTGTAAAGATTGTCAGCATGCACGATACAGAGATGAGTTTTATGGAGAACAAGATAAATTTTATAGAGGAGACGGTGACAAGGGCGTCAATGTATTTCAGGCCCACCGATCTTCGAGTTTCAAACCTGTACCATGCGATTCTAAACAGTGCCGACGTGGGCTTGAGGAAATGGGGTCCATGACTGTCTGCCCTCACCCATCGTCGCATTGCATGTATAAAATCAGCTACTTGGGAGGGCAACTTGCATTAGGTTTCTTCGGCGAAGAGATTTTAAGAGCACCCCTCACTACAACCGGTAGGACTCTAAAGCTGCAACACATGGTAATTGGCTGCACAGAGACGGTCGTTAAGGGACTGAAAGCTGATGGCATATTGGGTTTGGGGTTTGCCCAAAGCTCGTGGGCGGATAAAACTGGTAGGAACTTCGGTCCCAAGTTCTCTTATTGCCTGATGTCTTTTGACAACCACATGAACGTGACAAGTTATATCACATTTGGTGCCAACAAGAAAGCTGCATGGCACCCCCCTTTGACACGCTTCAAATTTTTTTTGCCGTCCTCTGGTAATTATGGCGTGAAAATTGTGGGCATATCCGTTGGGGGAAAACTACTAGACATACCAAGTCATATATGGAGATATGATAACGTTACTGGTGGCGGGACAGTTTTTGATTCAGGCACAAGCAACTCATGGCTGGCCTGGCCAGCTTACGACGCTGTTATGGCTGAATACATAAAGGCTCTCTCAAAATACGAAAGGTTAAAACGAGATCCGAAGCTCCCATTTGAGTTTTGCTTCAAGTCAACAGGATTGGATTGGTCTTCTGTGCCAAAATTCACATTTCATTTTGCAAATGGAGCTGTATTTGAGCCACCATTGTGGAACGTCATTCCTGAAGTAGTTAACACCGGCGAAAGGTGTGTGGCGTTTGTCAAGTCTAACACGTACGTTGGCTCTCTGATTGGCAACATAATGCAGCAAAACTTTCTGTGGGAGTTTAATTTAGAGGAGCAGACAATCGGTTTCACTCCTTCCAGTTGCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009743 GO:0009744 GO:0009888 GO:0009987 GO:0010019 GO:0010033 GO:0010073 GO:0010074 GO:0010492 GO:0016787 GO:0019538 GO:0019827 GO:0023052 GO:0030163 GO:0032501 GO:0032502 GO:0034285 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048511 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070001 GO:0070011 GO:0071704 GO:0098727 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

494

Amino Acids

55.63

Weight (kDa)

8.66

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	114 - 489	2.6e-16	Eukaryotic aspartyl protease
TAXi_N	PF14543	115 - 312	2.1e-38	Xylanase inhibitor N-terminal
TAXi_C	PF14541	335 - 489	1.2e-28	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018817)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g13830
rosa_chinensis	RchiOBHm_Chr5g0023011
rosa_laevigata	RLG00000032690
rosa_rugosa	Rorug05G0076500
rosa_samantha	Rh5AG162700 Rh5BG161900 Rh5CG176600 Rh5DG163300
rosa_wichuraiana	Rw5G014660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	521
AccB1I	GGYRCC	2 cut(s)	935, 957
AciI	CCGC	3 cut(s)	281, 842, 1095
AclI	AACGTT	1 cut(s)	1083
AclWI	GGATC	1 cut(s)	1202
AcoI	YGGCCR	1 cut(s)	1139
AcsI	RAATTY	4 cut(s)	17, 494, 980, 1271
AcuI	CTGAAG	2 cut(s)	372, 1353
AcyI	GRCGYC	1 cut(s)	522
AfaI	GTAC	4 cut(s)	334, 344, 567, 1385
AfiI	CCNNNNNNNGG	3 cut(s)	418, 998, 1353
AflIII	ACRYGT	2 cut(s)	384, 1380
AgeI	ACCGGT	1 cut(s)	731
AgsI	TTSAA	3 cut(s)	559, 979, 1237
AjiI	CACGTC	1 cut(s)	593
AjnI	CCWGG	2 cut(s)	345, 1136
AjuI	GAANNNNNNNTTGG	4 cut(s)	345, 371, 377, 403
AleI	CACNNNNGTG	2 cut(s)	249, 1315
AluBI	AGCT	9 cut(s)	163, 663, 748, 800, 834, 950, 1145, 1216, 1298
AluI	AGCT	9 cut(s)	163, 663, 748, 800, 834, 950, 1145, 1216, 1298
Alw21I	GWGCWC	1 cut(s)	718
Alw26I	GTCTC	3 cut(s)	111, 501, 770
AlwI	GGATC	1 cut(s)	1202
AoxI	GGCC	3 cut(s)	537, 1134, 1139
ApeKI	GCWGC	4 cut(s)	748, 768, 950, 1414
ApoI	RAATTY	4 cut(s)	17, 494, 980, 1271
ArsI	GACNNNNNNTTYG	2 cut(s)	34, 66
AseI	ATTAAT	1 cut(s)	258
AsiGI	ACCGGT	1 cut(s)	731
AspS9I	GGNCC	3 cut(s)	538, 612, 866
AsuHPI	GGTGA	3 cut(s)	236, 524, 623
AvaII	GGWCC	2 cut(s)	612, 866
BalI	TGGCCA	1 cut(s)	1141
BanI	GGYRCC	2 cut(s)	935, 957
BauI	CACGAG	1 cut(s)	835
BbsI	GAAGAC	2 cut(s)	47, 1251
Bbv12I	GWGCWC	1 cut(s)	718
BbvI	GCAGC	4 cut(s)	735, 755, 937, 1426
BccI	CCATC	6 cut(s)	89, 95, 207, 304, 643, 797
BceAI	ACGGC	2 cut(s)	310, 976
BciT130I	CCWGG	2 cut(s)	347, 1138
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	111, 501, 770
BfaI	CTAG	2 cut(s)	1049, 1483
BisI	GCNGC	4 cut(s)	749, 769, 951, 1415
BlsI	GCNGC	4 cut(s)	750, 770, 952, 1416
Bme1390I	CCNGG	2 cut(s)	347, 1138
Bme18I	GGWCC	2 cut(s)	612, 866
BmgBI	CACGTC	1 cut(s)	593
BmgT120I	GGNCC	3 cut(s)	538, 612, 866
BmiI	GGNNCC	7 cut(s)	148, 197, 367, 613, 868, 937, 959
BmrFI	CCNGG	2 cut(s)	347, 1138
BmrI	ACTGGG	2 cut(s)	42, 345
BmuI	ACTGGG	2 cut(s)	42, 345
BpiI	GAAGAC	2 cut(s)	47, 1251
BplI	GAGNNNNNCTC	2 cut(s)	705, 737
BpuEI	CTTGAG	1 cut(s)	620
BsaAI	YACGTR	1 cut(s)	1383
BsaBI	GATNNNNATC	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	731
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 998, 1353
Bse118I	RCCGGY	2 cut(s)	731, 1346
Bse1I	ACTGG	5 cut(s)	48, 340, 856, 1093, 1473
Bse3DI	GCAATG	2 cut(s)	71, 643
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	2 cut(s)	347, 1138
BseGI	GGATG	1 cut(s)	8
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	3 cut(s)	418, 998, 1353
BseMI	GCAATG	2 cut(s)	71, 643
BseNI	ACTGG	5 cut(s)	48, 340, 856, 1093, 1473
BseRI	GAGGAG	2 cut(s)	519, 1460
BseXI	GCAGC	4 cut(s)	735, 755, 937, 1426
BsgI	GTGCAG	2 cut(s)	342, 754
Bsh1285I	CGRYCG	1 cut(s)	783
BshFI	GGCC	3 cut(s)	539, 1136, 1141
BshNI	GGYRCC	2 cut(s)	935, 957
BshTI	ACCGGT	1 cut(s)	731
BsiEI	CGRYCG	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	718
BsiSI	CCGG	2 cut(s)	732, 1347
BsiWI	CGTACG	1 cut(s)	1383
BslFI	GGGAC	4 cut(s)	188, 804, 852, 1111
BslI	CCNNNNNNNGG	3 cut(s)	418, 998, 1353
BsmAI	GTCTC	3 cut(s)	111, 501, 770
BsmBI	CGTCTC	2 cut(s)	501, 770
BsmFI	GGGAC	4 cut(s)	188, 804, 852, 1111
BsnI	GGCC	3 cut(s)	539, 1136, 1141
Bso31I	GGTCTC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp143I	GATC	3 cut(s)	130, 545, 1207
BspACI	CCGC	3 cut(s)	281, 842, 1095
BspANI	GGCC	3 cut(s)	539, 1136, 1141
BspLI	GGNNCC	7 cut(s)	148, 197, 367, 613, 868, 937, 959
BspPI	GGATC	1 cut(s)	1202
BspT107I	GGYRCC	2 cut(s)	935, 957
BspTNI	GGTCTC	1 cut(s)	111
BsrDI	GCAATG	2 cut(s)	71, 643
BsrFI	RCCGGY	2 cut(s)	731, 1346
BsrI	ACTGG	5 cut(s)	48, 340, 856, 1093, 1473
BssAI	RCCGGY	2 cut(s)	731, 1346
BssMI	GATC	3 cut(s)	130, 545, 1207
BssNI	GRCGYC	1 cut(s)	522
BssSI	CACGAG	1 cut(s)	835
Bst2BI	CACGAG	1 cut(s)	835
Bst2UI	CCWGG	2 cut(s)	347, 1138
Bst4CI	ACNGT	6 cut(s)	440, 512, 585, 622, 781, 1102
Bst6I	CTCTTC	2 cut(s)	65, 696
BstACI	GRCGYC	1 cut(s)	522
BstBAI	YACGTR	1 cut(s)	1383
BstC8I	GCNNGC	3 cut(s)	456, 1134, 1143
BstF5I	GGATG	1 cut(s)	8
BstKTI	GATC	3 cut(s)	133, 548, 1210
BstMAI	GTCTC	3 cut(s)	111, 501, 770
BstMBI	GATC	3 cut(s)	130, 545, 1207
BstMCI	CGRYCG	1 cut(s)	783
BstMWI	GCNNNNNNNGC	5 cut(s)	1138, 1142, 1151, 1160, 1295
BstNI	CCWGG	2 cut(s)	347, 1138
BstNSI	RCATGY	2 cut(s)	458, 652
BstSCI	CCNGG	2 cut(s)	345, 1136
BstV1I	GCAGC	4 cut(s)	735, 755, 937, 1426
BstV2I	GAAGAC	2 cut(s)	47, 1251
BstX2I	RGATCY	1 cut(s)	1207
BstXI	CCANNNNNNTGG	1 cut(s)	1317
BstYI	RGATCY	1 cut(s)	1207
BsuRI	GGCC	3 cut(s)	539, 1136, 1141
BtrI	CACGTC	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	590
Cac8I	GCNNGC	3 cut(s)	456, 1134, 1143
Cfr10I	RCCGGY	2 cut(s)	731, 1346
Cfr13I	GGNCC	3 cut(s)	538, 612, 866
CseI	GACGC	3 cut(s)	230, 511, 1160
Csp6I	GTAC	4 cut(s)	333, 343, 566, 1384
CspAI	ACCGGT	1 cut(s)	731
CspCI	CAANNNNNGTGG	2 cut(s)	818, 853
CviQI	GTAC	4 cut(s)	333, 343, 566, 1384
DpnI	GATC	3 cut(s)	132, 547, 1209
DpnII	GATC	3 cut(s)	130, 545, 1207
DrdI	GACNNNNNNGTC	1 cut(s)	521
DseDI	GACNNNNNNGTC	1 cut(s)	521
EaeI	YGGCCR	1 cut(s)	1139
Eam1104I	CTCTTC	2 cut(s)	65, 696
EarI	CTCTTC	2 cut(s)	65, 696
EciI	GGCGGA	1 cut(s)	857
Eco31I	GGTCTC	1 cut(s)	111
Eco47I	GGWCC	2 cut(s)	612, 866
Eco57I	CTGAAG	2 cut(s)	372, 1353
EcoRII	CCWGG	2 cut(s)	345, 1136
Esp3I	CGTCTC	2 cut(s)	501, 770
FaqI	GGGAC	4 cut(s)	188, 804, 852, 1111
FauI	CCCGC	2 cut(s)	288, 1088
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	4 cut(s)	749, 769, 951, 1415
Fsp4HI	GCNGC	4 cut(s)	749, 769, 951, 1415
FspBI	CTAG	2 cut(s)	1049, 1483
GluI	GCNGC	4 cut(s)	749, 769, 951, 1415
HaeIII	GGCC	3 cut(s)	539, 1136, 1141
HapII	CCGG	2 cut(s)	732, 1347
HgaI	GACGC	3 cut(s)	230, 511, 1160
Hin1I	GRCGYC	1 cut(s)	522
HincII	GTYRAC	3 cut(s)	118, 1242, 1342
HindII	GTYRAC	3 cut(s)	118, 1242, 1342
HinfI	GANTC	5 cut(s)	176, 314, 575, 739, 1109
HpaI	GTTAAC	2 cut(s)	118, 1342
HpaII	CCGG	2 cut(s)	732, 1347
HphI	GGTGA	3 cut(s)	236, 524, 623
Hpy166II	GTNNAC	3 cut(s)	118, 1242, 1342
Hpy188I	TCNGA	2 cut(s)	1212, 1398
Hpy188III	TCNNGA	2 cut(s)	134, 1331
Hpy8I	GTNNAC	3 cut(s)	118, 1242, 1342
Hpy99I	CGWCG	4 cut(s)	140, 594, 643, 1154
HpyAV	CCTTC	3 cut(s)	28, 137, 1479
HpyCH4III	ACNGT	6 cut(s)	440, 512, 585, 622, 781, 1102
HpyCH4IV	ACGT	7 cut(s)	386, 592, 912, 1083, 1323, 1382, 1386
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1138, 1142, 1151, 1160, 1295
HpySE526I	ACGT	7 cut(s)	386, 592, 912, 1083, 1323, 1382, 1386
Hsp92I	GRCGYC	1 cut(s)	522
Ksp22I	TGATCA	1 cut(s)	130
KspAI	GTTAAC	2 cut(s)	118, 1342
Kzo9I	GATC	3 cut(s)	130, 545, 1207
LmnI	GCTCC	3 cut(s)	1221, 1295, 1447
Lsp1109I	GCAGC	4 cut(s)	735, 755, 937, 1426
MaeI	CTAG	2 cut(s)	1049, 1483
MaeII	ACGT	7 cut(s)	386, 592, 912, 1083, 1323, 1382, 1386
MaeIII	GTNAC	5 cut(s)	242, 407, 512, 913, 1084
MalI	GATC	3 cut(s)	132, 547, 1209
MboI	GATC	3 cut(s)	130, 545, 1207
MboII	GAAGA	7 cut(s)	52, 52, 58, 540, 685, 713, 1251
MfeI	CAATTG	1 cut(s)	424
MflI	RGATCY	1 cut(s)	1207
MhlI	GDGCHC	1 cut(s)	718
MlsI	TGGCCA	1 cut(s)	1141
MluNI	TGGCCA	1 cut(s)	1141
MlyI	GAGTC	3 cut(s)	170, 323, 733
Mox20I	TGGCCA	1 cut(s)	1141
MscI	TGGCCA	1 cut(s)	1141
MseI	TTAA	9 cut(s)	117, 258, 300, 305, 710, 786, 1199, 1341, 1437
MslI	CAYNNNNRTG	4 cut(s)	138, 249, 911, 1315
Msp20I	TGGCCA	1 cut(s)	1141
MspI	CCGG	2 cut(s)	732, 1347
MspR9I	CCNGG	2 cut(s)	347, 1138
MunI	CAATTG	1 cut(s)	424
MvaI	CCWGG	2 cut(s)	347, 1138
MwoI	GCNNNNNNNGC	5 cut(s)	1138, 1142, 1151, 1160, 1295
NdeII	GATC	3 cut(s)	130, 545, 1207
NlaIV	GGNNCC	7 cut(s)	148, 197, 367, 613, 868, 937, 959
NmuCI	GTSAC	4 cut(s)	242, 407, 512, 913
NspI	RCATGY	2 cut(s)	458, 652
OliI	CACNNNNGTG	2 cut(s)	249, 1315
PaeI	GCATGC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	575, 1109
Pfl23II	CGTACG	1 cut(s)	1383
PinAI	ACCGGT	1 cut(s)	731
PkrI	GCNGC	4 cut(s)	750, 770, 952, 1416
PleI	GAGTC	3 cut(s)	170, 322, 733
PpsI	GAGTC	3 cut(s)	170, 322, 733
Ppu21I	YACGTR	1 cut(s)	1383
PshBI	ATTAAT	1 cut(s)	258
Psp1406I	AACGTT	1 cut(s)	1083
Psp6I	CCWGG	2 cut(s)	345, 1136
PspGI	CCWGG	2 cut(s)	345, 1136
PspLI	CGTACG	1 cut(s)	1383
PspN4I	GGNNCC	7 cut(s)	148, 197, 367, 613, 868, 937, 959
PspPI	GGNCC	3 cut(s)	538, 612, 866
PsuI	RGATCY	1 cut(s)	1207
RsaI	GTAC	4 cut(s)	334, 344, 567, 1385
RsaNI	GTAC	4 cut(s)	333, 343, 566, 1384
RseI	CAYNNNNRTG	4 cut(s)	138, 249, 911, 1315
SaqAI	TTAA	9 cut(s)	117, 258, 300, 305, 710, 786, 1199, 1341, 1437
SatI	GCNGC	4 cut(s)	749, 769, 951, 1415
Sau3AI	GATC	3 cut(s)	130, 545, 1207
Sau96I	GGNCC	3 cut(s)	538, 612, 866
SchI	GAGTC	3 cut(s)	170, 323, 733
ScrFI	CCNGG	2 cut(s)	347, 1138
SduI	GDGCHC	1 cut(s)	718
SgrAI	CRCCGGYG	1 cut(s)	1346
SinI	GGWCC	2 cut(s)	612, 866
SmiMI	CAYNNNNRTG	4 cut(s)	138, 249, 911, 1315
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
SphI	GCATGC	1 cut(s)	458
SsiI	CCGC	3 cut(s)	281, 842, 1095
SspMI	CTAG	2 cut(s)	1049, 1483
StyD4I	CCNGG	2 cut(s)	345, 1136
TaaI	ACNGT	6 cut(s)	440, 512, 585, 622, 781, 1102
TaiI	ACGT	7 cut(s)	389, 595, 915, 1086, 1326, 1385, 1389
TaqI	TCGA	2 cut(s)	159, 551
TaqII	GACCGA	1 cut(s)	854
TfiI	GAWTC	2 cut(s)	575, 1109
Tru1I	TTAA	9 cut(s)	117, 258, 300, 305, 710, 786, 1199, 1341, 1437
Tru9I	TTAA	9 cut(s)	117, 258, 300, 305, 710, 786, 1199, 1341, 1437
TscAI	CASTG	1 cut(s)	590
TseFI	GTSAC	4 cut(s)	242, 407, 512, 913
TseI	GCWGC	4 cut(s)	748, 768, 950, 1414
Tsp45I	GTSAC	4 cut(s)	242, 407, 512, 913
TspDTI	ATGAA	5 cut(s)	47, 52, 156, 923, 1271
TspGWI	ACGGA	2 cut(s)	239, 1021
TspRI	CASTG	1 cut(s)	590
VpaK11BI	GGWCC	2 cut(s)	612, 866
VspI	ATTAAT	1 cut(s)	258
XapI	RAATTY	4 cut(s)	17, 494, 980, 1271
XceI	RCATGY	2 cut(s)	458, 652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1065
XspI	CTAG	2 cut(s)	1049, 1483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.