FvH4_3g15790

Peptidase, trypsin-like serine and cysteine proteases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0024069
Physical Location & Seq
Reverse (-)
9939916 .. 9941874
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15790.t1

Sequence Viewer

Length: 894 bp
ATGCTAGACTTGGATCATGATACGCCACCGTATGGCAGAAAGCTCAGTTTCCCTTTCGAGCGAACGGAGGACACTGAAGTCCAGCTACTCGCCTCCTGCAATGGTTTGGTCTTTGTAGCCCTTGATGATACCTACTTCTACATCTGGAACCCATCAACCGGATTCTCCACGCAGTTCCCTGAGCCAGGCTTTATTTGTAAAGCCCTCTGGTTTTATGGTGCTGGATATTCGTCTGCCACAGACGACTACAAAGTTTTCACAGCCTCATGCGACGTGGATGGAGATGAAGATCCGGAACCGATGAAGATGTTCTCGTTGAGAGCTCATGTTTGGAAAGCAATCCAACACCCTGGTCATCAATCCAGTGTTACAGGGATTCTTTTGAATGAGGCCCTTCATTGGGTGAGCGGGAACGAAATATTCGCTTTTGATTTGGCACAAGAGGAGTTTAGGACAATGCGTCTGCCTCATAATGCCCAAACTCCCCAACCAACTGCAATTGGATCCACTGCTGGTGACTCGTCACCTCCTGATAGGTTGCTTATCCCTTTAGAAGTTGAACCGGCTGGAAGACCTTTGTGTCCATCATTAGTGGAATCAGTGTTCCATCTAGAAGATGGGATTAAGGCGGTTCCTAGTGTTGAGCATCAATCCACTCCAAGCTTCATCAAAGGTTCTCCACCCATGGGTAGAACAGTTTCTGAGAATCTCTCGTCATTGAGGAATGGCTGCGACGAAGATATTTGTTTTACGCTGCAGTTGGGTGACAATGAGGCCAAGAGAAGACGTTCGGATACTTTAACCAGTATTGTTGAACCAAAATGTACATGCTTGAGATCTCCGGCTTTAAGCTTGGGGATCGAACCAACACAAGCTAATATTTGTAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

32.8

Weight (kDa)

4.84

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 20 - 162 1.1e-12 F-box associated beta propeller domain
FBA_3 PF08268 22 - 160 4.9e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024069)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15790
pyrus_communis pycom10g17310
rosa_multiflora Rmu_sc0006854.1_g000014

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 77, 579
AccB7I CCANNNNNTGG 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 408
AccIII TCCGGA 1 cut(s) 292
AciI CCGC 2 cut(s) 408, 629
AclWI GGATC 5 cut(s) 21, 284, 498, 511, 866
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 1 cut(s) 826
AfiI CCNNNNNNNGG 6 cut(s) 32, 158, 185, 399, 400, 686
AgsI TTSAA 3 cut(s) 385, 560, 815
AhdI GACNNNNNGTC 1 cut(s) 459
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 2 cut(s) 184, 349
AloI GAACNNNNNNTCC 2 cut(s) 587, 619
AluBI AGCT 6 cut(s) 43, 85, 323, 663, 852, 875
AluI AGCT 6 cut(s) 43, 85, 323, 663, 852, 875
Alw21I GWGCWC 1 cut(s) 325
AlwI GGATC 5 cut(s) 21, 284, 498, 511, 866
AlwNI CAGNNNCTG 1 cut(s) 701
Aor13HI TCCGGA 1 cut(s) 292
AoxI GGCC 2 cut(s) 390, 774
ApeKI GCWGC 2 cut(s) 729, 754
Asp700I GAANNNNTTC 3 cut(s) 308, 697, 787
AspS9I GGNCC 1 cut(s) 391
AsuHPI GGTGA 4 cut(s) 415, 516, 527, 776
BamHI GGATCC 1 cut(s) 503
BanII GRGCYC 1 cut(s) 325
BarI GAAGNNNNNNTAC 2 cut(s) 69, 101
BbsI GAAGAC 2 cut(s) 577, 790
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 716, 741
BccI CCATC 5 cut(s) 160, 272, 592, 611, 615
BciT130I CCWGG 2 cut(s) 186, 351
BciVI GTATCC 1 cut(s) 787
BfaI CTAG 3 cut(s) 5, 611, 636
BfmI CTRYAG 1 cut(s) 755
BfuI GTATCC 1 cut(s) 787
BglII AGATCT 1 cut(s) 836
BisI GCNGC 2 cut(s) 730, 755
BlsI GCNGC 2 cut(s) 731, 756
Bme1390I CCNGG 2 cut(s) 186, 351
BmeRI GACNNNNNGTC 1 cut(s) 459
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 4 cut(s) 149, 297, 505, 633
BmrFI CCNGG 2 cut(s) 186, 351
BmsI GCATC 1 cut(s) 655
BpiI GAAGAC 2 cut(s) 577, 790
BplI GAGNNNNNCTC 2 cut(s) 695, 727
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 853
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 349, 684
BsaWI WCCGGW 2 cut(s) 158, 292
Bsc4I CCNNNNNNNGG 6 cut(s) 32, 158, 185, 399, 400, 686
Bse118I RCCGGY 1 cut(s) 562
Bse1I ACTGG 2 cut(s) 363, 804
Bse3DI GCAATG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 288
BseAI TCCGGA 1 cut(s) 292
BseBI CCWGG 2 cut(s) 186, 351
BseDI CCNNGG 2 cut(s) 349, 684
BseGI GGATG 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 6 cut(s) 32, 158, 185, 399, 400, 686
BseMI GCAATG 1 cut(s) 106
BseMII CTCAG 3 cut(s) 58, 171, 693
BseNI ACTGG 2 cut(s) 363, 804
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 2 cut(s) 716, 741
BshFI GGCC 2 cut(s) 392, 776
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 4 cut(s) 159, 293, 563, 842
BslI CCNNNNNNNGG 6 cut(s) 32, 158, 185, 399, 400, 686
BsnI GGCC 2 cut(s) 392, 776
Bsp1286I GDGCHC 1 cut(s) 325
Bsp13I TCCGGA 1 cut(s) 292
Bsp1407I TGTACA 1 cut(s) 824
Bsp143I GATC 5 cut(s) 13, 289, 503, 836, 858
Bsp19I CCATGG 1 cut(s) 684
BspACI CCGC 2 cut(s) 408, 629
BspANI GGCC 2 cut(s) 392, 776
BspCNI CTCAG 3 cut(s) 57, 172, 694
BspEI TCCGGA 1 cut(s) 292
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 4 cut(s) 149, 297, 505, 633
BspMAI CTGCAG 1 cut(s) 759
BspPI GGATC 5 cut(s) 21, 284, 498, 511, 866
BsrBI CCGCTC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 106
BsrFI RCCGGY 1 cut(s) 562
BsrGI TGTACA 1 cut(s) 824
BsrI ACTGG 2 cut(s) 363, 804
BssAI RCCGGY 1 cut(s) 562
BssECI CCNNGG 2 cut(s) 349, 684
BssMI GATC 5 cut(s) 13, 289, 503, 836, 858
BssT1I CCWWGG 1 cut(s) 684
Bst2UI CCWGG 2 cut(s) 186, 351
Bst4CI ACNGT 2 cut(s) 30, 697
BstAUI TGTACA 1 cut(s) 824
BstDEI CTNAG 3 cut(s) 44, 180, 702
BstDSI CCRYGG 1 cut(s) 684
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 5 cut(s) 16, 292, 506, 839, 861
BstMBI GATC 5 cut(s) 13, 289, 503, 836, 858
BstNI CCWGG 2 cut(s) 186, 351
BstNSI RCATGY 1 cut(s) 831
BstSCI CCNGG 2 cut(s) 184, 349
BstSFI CTRYAG 1 cut(s) 755
BstV1I GCAGC 2 cut(s) 716, 741
BstV2I GAAGAC 2 cut(s) 577, 790
BstX2I RGATCY 3 cut(s) 289, 503, 836
BstXI CCANNNNNNTGG 1 cut(s) 350
BstYI RGATCY 3 cut(s) 289, 503, 836
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 2 cut(s) 392, 776
BtgI CCRYGG 1 cut(s) 684
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 4 cut(s) 72, 370, 507, 606
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 562
Cfr13I GGNCC 1 cut(s) 391
CseI GACGC 1 cut(s) 449
Csp6I GTAC 1 cut(s) 825
CviAII CATG 5 cut(s) 17, 267, 326, 685, 828
CviQI GTAC 1 cut(s) 825
DdeI CTNAG 3 cut(s) 44, 180, 702
DpnI GATC 5 cut(s) 15, 291, 505, 838, 860
DpnII GATC 5 cut(s) 13, 289, 503, 836, 858
DrdI GACNNNNNNGTC 2 cut(s) 77, 579
DriI GACNNNNNGTC 1 cut(s) 459
DseDI GACNNNNNNGTC 2 cut(s) 77, 579
Eam1105I GACNNNNNGTC 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 323
Eco130I CCWWGG 1 cut(s) 684
Eco24I GRGCYC 1 cut(s) 325
Eco53kI GAGCTC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 96
EcoICRI GAGCTC 1 cut(s) 323
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 391
EcoRII CCWGG 2 cut(s) 184, 349
EcoT14I CCWWGG 1 cut(s) 684
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 684
FaeI CATG 5 cut(s) 20, 270, 329, 688, 831
FaiI YATR 8 cut(s) 18, 33, 216, 268, 327, 471, 686, 829
FatI CATG 5 cut(s) 16, 266, 325, 684, 827
FauI CCCGC 1 cut(s) 401
Fnu4HI GCNGC 2 cut(s) 730, 755
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 2 cut(s) 730, 755
FspBI CTAG 3 cut(s) 5, 611, 636
GluI GCNGC 2 cut(s) 730, 755
HaeIII GGCC 2 cut(s) 392, 776
HapII CCGG 4 cut(s) 159, 293, 563, 842
HgaI GACGC 1 cut(s) 449
Hin1II CATG 5 cut(s) 20, 270, 329, 688, 831
HindIII AAGCTT 2 cut(s) 661, 850
HinfI GANTC 5 cut(s) 162, 376, 518, 596, 706
HpaII CCGG 4 cut(s) 159, 293, 563, 842
HphI GGTGA 4 cut(s) 415, 516, 527, 776
Hpy188I TCNGA 2 cut(s) 703, 793
Hpy188III TCNNGA 5 cut(s) 17, 145, 293, 530, 611
Hpy99I CGWCG 2 cut(s) 275, 737
HpyAV CCTTC 1 cut(s) 404
HpyCH4III ACNGT 2 cut(s) 30, 697
HpyCH4IV ACGT 2 cut(s) 273, 787
HpyCH4V TGCA 3 cut(s) 99, 497, 757
HpyF3I CTNAG 3 cut(s) 44, 180, 702
HpySE526I ACGT 2 cut(s) 273, 787
Hsp92II CATG 5 cut(s) 20, 270, 329, 688, 831
Kpn2I TCCGGA 1 cut(s) 292
Kzo9I GATC 5 cut(s) 13, 289, 503, 836, 858
Lsp1109I GCAGC 2 cut(s) 716, 741
LweI GCATC 1 cut(s) 655
MaeI CTAG 3 cut(s) 5, 611, 636
MaeII ACGT 2 cut(s) 273, 787
MaeIII GTNAC 4 cut(s) 367, 515, 522, 764
MalI GATC 5 cut(s) 15, 291, 505, 838, 860
MbiI CCGCTC 1 cut(s) 408
MboI GATC 5 cut(s) 13, 289, 503, 836, 858
MboII GAAGA 6 cut(s) 299, 316, 582, 626, 749, 795
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 3 cut(s) 289, 503, 836
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 1 cut(s) 498
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 1 cut(s) 367
MroI TCCGGA 1 cut(s) 292
MroXI GAANNNNTTC 3 cut(s) 308, 697, 787
MseI TTAA 3 cut(s) 624, 800, 848
MspI CCGG 4 cut(s) 159, 293, 563, 842
MspR9I CCNGG 2 cut(s) 186, 351
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 2 cut(s) 186, 351
NcoI CCATGG 1 cut(s) 684
NdeII GATC 5 cut(s) 13, 289, 503, 836, 858
NlaIII CATG 5 cut(s) 20, 270, 329, 688, 831
NlaIV GGNNCC 4 cut(s) 149, 297, 505, 633
NmuCI GTSAC 3 cut(s) 515, 522, 764
NspI RCATGY 1 cut(s) 831
PagI TCATGA 1 cut(s) 16
PdmI GAANNNNTTC 3 cut(s) 308, 697, 787
PfeI GAWTC 4 cut(s) 162, 376, 596, 706
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 2 cut(s) 731, 756
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
Psp124BI GAGCTC 1 cut(s) 325
Psp6I CCWGG 2 cut(s) 184, 349
PspGI CCWGG 2 cut(s) 184, 349
PspN4I GGNNCC 4 cut(s) 149, 297, 505, 633
PspPI GGNCC 1 cut(s) 391
PstI CTGCAG 1 cut(s) 759
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 3 cut(s) 289, 503, 836
RsaI GTAC 1 cut(s) 826
RsaNI GTAC 1 cut(s) 825
SacI GAGCTC 1 cut(s) 325
SaqAI TTAA 3 cut(s) 624, 800, 848
SatI GCNGC 2 cut(s) 730, 755
Sau3AI GATC 5 cut(s) 13, 289, 503, 836, 858
Sau96I GGNCC 1 cut(s) 391
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 2 cut(s) 186, 351
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 1 cut(s) 655
SfcI CTRYAG 1 cut(s) 755
SmlI CTYRAG 1 cut(s) 832
SmoI CTYRAG 1 cut(s) 832
Sse9I AATT 1 cut(s) 498
SsiI CCGC 2 cut(s) 408, 629
SspI AATATT 2 cut(s) 420, 880
SspMI CTAG 3 cut(s) 5, 611, 636
SstI GAGCTC 1 cut(s) 325
StyD4I CCNGG 2 cut(s) 184, 349
StyI CCWWGG 1 cut(s) 684
TaaI ACNGT 2 cut(s) 30, 697
TaiI ACGT 2 cut(s) 276, 790
TaqI TCGA 2 cut(s) 57, 861
TasI AATT 1 cut(s) 498
TatI WGTACW 1 cut(s) 824
TfiI GAWTC 4 cut(s) 162, 376, 596, 706
Tru1I TTAA 3 cut(s) 624, 800, 848
Tru9I TTAA 3 cut(s) 624, 800, 848
TscAI CASTG 4 cut(s) 79, 370, 514, 606
TseFI GTSAC 3 cut(s) 515, 522, 764
TseI GCWGC 2 cut(s) 729, 754
Tsp45I GTSAC 3 cut(s) 515, 522, 764
TspDTI ATGAA 4 cut(s) 300, 317, 386, 655
TspGWI ACGGA 1 cut(s) 80
TspRI CASTG 4 cut(s) 79, 370, 514, 606
Van91I CCANNNNNTGG 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 183
XbaI TCTAGA 1 cut(s) 610
XceI RCATGY 1 cut(s) 831
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XmnI GAANNNNTTC 3 cut(s) 308, 697, 787
XspI CTAG 3 cut(s) 5, 611, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.