Rmu_sc0006854.1_g000014

Peptidase, trypsin-like serine and cysteine proteases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006854.1
OG0024069
Physical Location & Seq
Reverse (-)
57586 .. 57903
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006854.1_g000014.1.cds

Sequence Viewer

Length: 318 bp
ctgggtctccaaatccagcgtatccctttagaagctgaacctggaagcctacctgtgagtccgtcattagtagaaacagagttccatctagaagatgggatcaaggcggttcctagtgttgagcatcaattcataccaagcttcatcacaggttccccactacataatatgtgtcggatgggcagaacagtttctgagaatctctcatcattaaggaatggctgcgacgaagatatttgtttttcactgcagttgggcgacaatgaggccaagagaagacgttctgatacttcaaccagtactgtagaaccaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.55

Weight (kDa)

5.08

Isoelectric Point (pI)

66.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024069)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g15790
pyrus_communis pycom10g17310
rosa_multiflora Rmu_sc0006854.1_g000014

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AclWI GGATC 1 cut(s) 107
AfaI GTAC 1 cut(s) 301
AgsI TTSAA 1 cut(s) 294
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 2 cut(s) 35, 141
AluI AGCT 2 cut(s) 35, 141
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 1 cut(s) 107
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 222
Asp700I GAANNNNTTC 2 cut(s) 190, 280
BbsI GAAGAC 1 cut(s) 283
BbvI GCAGC 1 cut(s) 209
BccI CCATC 3 cut(s) 89, 93, 172
BciT130I CCWGG 1 cut(s) 42
BciVI GTATCC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 89, 114
BfmI CTRYAG 2 cut(s) 248, 303
BfuI GTATCC 1 cut(s) 32
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
BmcAI AGTACT 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 42
BmiI GGNNCC 2 cut(s) 111, 154
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 1 cut(s) 133
BpiI GAAGAC 1 cut(s) 283
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BsaI GGTCTC 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 297
BseBI CCWGG 1 cut(s) 42
BseGI GGATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 99
BspACI CCGC 1 cut(s) 107
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 111, 154
BspMAI CTGCAG 1 cut(s) 252
BspPI GGATC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 297
BssMI GATC 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 190, 304
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 183
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 99
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 2 cut(s) 248, 303
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 283
BsuI GTATCC 1 cut(s) 32
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 245
CaiI CAGNNNCTG 1 cut(s) 194
Csp6I GTAC 1 cut(s) 300
CviJI RGCY 5 cut(s) 35, 48, 141, 222, 269
CviKI_1 RGCY 5 cut(s) 35, 48, 141, 222, 269
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 1 cut(s) 195
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 40
FaiI YATR 3 cut(s) 134, 165, 170
Fnu4HI GCNGC 1 cut(s) 223
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 2 cut(s) 89, 114
GluI GCNGC 1 cut(s) 223
HaeIII GGCC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 2 cut(s) 58, 199
Hpy188I TCNGA 3 cut(s) 177, 196, 286
Hpy188III TCNNGA 1 cut(s) 89
Hpy99I CGWCG 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 190, 304
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 280
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 6 cut(s) 27, 29, 54, 66, 135, 310
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 133
MaeI CTAG 2 cut(s) 89, 114
MaeII ACGT 1 cut(s) 280
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 3 cut(s) 104, 242, 288
MluCI AATT 1 cut(s) 128
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 1 cut(s) 259
MroXI GAANNNNTTC 2 cut(s) 190, 280
MseI TTAA 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
NdeII GATC 1 cut(s) 99
NlaIV GGNNCC 2 cut(s) 111, 154
PdmI GAANNNNTTC 2 cut(s) 190, 280
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 1 cut(s) 224
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 111, 154
PstI CTGCAG 1 cut(s) 252
PstNI CAGNNNCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 1 cut(s) 99
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 42
SetI ASST 6 cut(s) 37, 43, 55, 143, 154, 283
SfaNI GCATC 1 cut(s) 133
SfcI CTRYAG 2 cut(s) 248, 303
Sse9I AATT 1 cut(s) 128
SsiI CCGC 1 cut(s) 107
SspMI CTAG 2 cut(s) 89, 114
StyD4I CCNGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 190, 304
TaiI ACGT 1 cut(s) 283
TasI AATT 1 cut(s) 128
TatI WGTACW 1 cut(s) 299
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 252
TseI GCWGC 1 cut(s) 222
TspDTI ATGAA 2 cut(s) 121, 133
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 252
XbaI TCTAGA 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 92
XmnI GAANNNNTTC 2 cut(s) 190, 280
XspI CTAG 2 cut(s) 89, 114
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.