FvH4_3g18490

Olee1-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017264
Physical Location & Seq
Forward (+)
11813300 .. 11814540
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18490.t1

Sequence Viewer

Length: 534 bp
ATGGCGAAGAACTTGGAAATCGTTGCAGTTTTTCTCACCTTGTCATGCTTGTTGTCTTTGGCCTATGCCGACGGTGACAATGGAGGCGACAAAACCAGCATCACTGTTGAGGGTTATGTATATTGTGACCCATGCCGTGTTCAGTTCCCAACCAGAGTCAGTAAACGGATATCCGGTGCTTTAGTAAGACTGGAATGCAGAAGTCGCGAAAATGAAACTGTCATCTACACCGACGATGCAACAACCGATGACAATGGATCCTATAAGCTTTTTGTGAATGAAGACTTCCAAGAACAGATATGTGAGGTGACAGCGATTAAAAGCAATACAGATGATTGCAATGAAAAATTTGACGCCATTGAAAGAGCTAGAGTTTTGATCACAAAAAAGAATGGCATTCAATCTGATCAGGCTCGTTATGCCAACCCTCTTGGGTTCATGAAGAAAGAAATTAGTGACGAGTGCAAAGAAGTTATTGAGGAATTATTCCCAGAAGACATGCCAGACGAATTTAAGAAAAAATTCGAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

178

Amino Acids

20.08

Weight (kDa)

4.6

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 36 - 116 2.1e-16 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017264)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18490
rosa_chinensis RchiOBHm_Chr5g0031251
rosa_laevigata RLG00000033294
rosa_multiflora Rmu_co8447941.1_g000001 Rmu_sc0004014.1_g000006
rosa_roxburghii Rroxscaffold_1G00049040
rosa_rugosa Rorug05G0123200
rosa_samantha Rh5AG216700 Rh5BG216100 Rh5CG239900 Rh5DG221300
rosa_wichuraiana Rw0G010920 Rw5G019820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AclWI GGATC 2 cut(s) 252, 265
AcsI RAATTY 3 cut(s) 347, 509, 521
AcyI GRCGYC 1 cut(s) 354
AgsI TTSAA 2 cut(s) 362, 401
AluBI AGCT 2 cut(s) 268, 368
AluI AGCT 2 cut(s) 268, 368
AlwI GGATC 2 cut(s) 252, 265
AoxI GGCC 1 cut(s) 60
ApoI RAATTY 3 cut(s) 347, 509, 521
Asp700I GAANNNNTTC 1 cut(s) 521
AsuHPI GGTGA 3 cut(s) 28, 86, 319
BamHI GGATCC 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 288, 501
BceAI ACGGC 1 cut(s) 120
BclI TGATCA 2 cut(s) 378, 406
BfaI CTAG 1 cut(s) 369
BmiI GGNNCC 1 cut(s) 259
BmsI GCATC 2 cut(s) 108, 226
BpiI GAAGAC 2 cut(s) 288, 501
BsaHI GRCGYC 1 cut(s) 354
BsaWI WCCGGW 1 cut(s) 173
Bse1I ACTGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 346
BseNI ACTGG 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 174
BsmI GAATGC 2 cut(s) 200, 396
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 3 cut(s) 257, 378, 406
Bsp68I TCGCGA 1 cut(s) 207
BspANI GGCC 1 cut(s) 62
BspFNI CGCG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 2 cut(s) 252, 265
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 1 cut(s) 195
BssMI GATC 3 cut(s) 257, 378, 406
BssNI GRCGYC 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 74, 106, 220
BstACI GRCGYC 1 cut(s) 354
BstFNI CGCG 1 cut(s) 207
BstKTI GATC 3 cut(s) 260, 381, 409
BstMBI GATC 3 cut(s) 257, 378, 406
BstMWI GCNNNNNNNGC 2 cut(s) 204, 419
BstNSI RCATGY 1 cut(s) 502
BstUI CGCG 1 cut(s) 207
BstV2I GAAGAC 2 cut(s) 288, 501
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 102
BtuMI TCGCGA 1 cut(s) 207
CciI TCATGA 1 cut(s) 438
CseI GACGC 1 cut(s) 362
CviAII CATG 4 cut(s) 45, 132, 439, 499
CviJI RGCY 4 cut(s) 62, 268, 368, 413
CviKI_1 RGCY 4 cut(s) 62, 268, 368, 413
DpnI GATC 3 cut(s) 259, 380, 408
DpnII GATC 3 cut(s) 257, 378, 406
Eco32I GATATC 1 cut(s) 171
EcoRV GATATC 1 cut(s) 171
FaeI CATG 4 cut(s) 48, 135, 442, 502
FatI CATG 4 cut(s) 44, 131, 438, 498
FbaI TGATCA 2 cut(s) 378, 406
FspBI CTAG 1 cut(s) 369
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 4 cut(s) 48, 135, 442, 502
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 1 cut(s) 156
HpaII CCGG 1 cut(s) 174
HphI GGTGA 3 cut(s) 28, 86, 319
Hpy166II GTNNAC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 406
Hpy188III TCNNGA 3 cut(s) 206, 439, 526
Hpy8I GTNNAC 1 cut(s) 164
Hpy99I CGWCG 2 cut(s) 74, 236
HpyCH4III ACNGT 3 cut(s) 74, 106, 220
HpyCH4V TGCA 5 cut(s) 26, 198, 239, 339, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 204, 419
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 4 cut(s) 48, 135, 442, 502
Ksp22I TGATCA 2 cut(s) 378, 406
Kzo9I GATC 3 cut(s) 257, 378, 406
LpnPI CCDG 7 cut(s) 109, 166, 176, 187, 395, 504, 516
LweI GCATC 2 cut(s) 108, 226
MaeI CTAG 1 cut(s) 369
MaeIII GTNAC 4 cut(s) 74, 125, 307, 455
MalI GATC 3 cut(s) 259, 380, 408
MboI GATC 3 cut(s) 257, 378, 406
MboII GAAGA 4 cut(s) 19, 293, 454, 506
MflI RGATCY 1 cut(s) 257
MluCI AATT 5 cut(s) 347, 450, 482, 509, 521
MlyI GAGTC 1 cut(s) 165
MnlI CCTC 5 cut(s) 77, 103, 298, 438, 472
MroXI GAANNNNTTC 1 cut(s) 521
MseI TTAA 2 cut(s) 318, 513
MspI CCGG 1 cut(s) 174
Mva1269I GAATGC 2 cut(s) 200, 396
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 204, 419
NdeII GATC 3 cut(s) 257, 378, 406
NlaIII CATG 4 cut(s) 48, 135, 442, 502
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 4 cut(s) 74, 125, 307, 455
NruI TCGCGA 1 cut(s) 207
NspI RCATGY 1 cut(s) 502
PagI TCATGA 1 cut(s) 438
PctI GAATGC 2 cut(s) 200, 396
PdmI GAANNNNTTC 1 cut(s) 521
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 257
RruI TCGCGA 1 cut(s) 207
SaqAI TTAA 2 cut(s) 318, 513
Sau3AI GATC 3 cut(s) 257, 378, 406
SchI GAGTC 1 cut(s) 165
SetI ASST 4 cut(s) 41, 270, 309, 370
SfaNI GCATC 2 cut(s) 108, 226
Sse9I AATT 5 cut(s) 347, 450, 482, 509, 521
SspMI CTAG 1 cut(s) 369
TaaI ACNGT 3 cut(s) 74, 106, 220
TaqI TCGA 1 cut(s) 525
TasI AATT 5 cut(s) 347, 450, 482, 509, 521
Tru1I TTAA 2 cut(s) 318, 513
Tru9I TTAA 2 cut(s) 318, 513
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 4 cut(s) 74, 125, 307, 455
Tsp45I GTSAC 4 cut(s) 74, 125, 307, 455
TspDTI ATGAA 5 cut(s) 228, 294, 357, 427, 455
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 109
XapI RAATTY 3 cut(s) 347, 509, 521
XceI RCATGY 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 521
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.