FvH4_3g23610
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0027805
Physical Location & Seq
Forward (+)
16707635 .. 16710522
2888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23610.t1

Sequence Viewer

Length: 465 bp
ATGTATCAGATTGAGGTAGAGAGCGAAATTGAGGGCGGGTCGAGTTGTTGTGTGAGGATCGTGAACCGGCGTGACGTGTACTTGACGGAGTTTGATGCTTCGTTTCCGGATTCAACTTCTCACCAGAATTTTGAAGAGCTGAGATTTTCATATTTGAAAGAAGATAGTGATGGCCGCATTACAGGCAGTGATGCTATTAAGTTCTTCAGCATGTCCAATTTGTCTCGGCAAGATCTTAAGCAGGTTTGGGCGATTACGAAGAGGCAGGGGTTTCTTGGTTTCACTGAGTTCATTACTGCTATGCAAACAAACAGTGATTTTGATGCCAAACCCATGGTTATGCTTTTGGGTAGTGATGGCCGCATTATGGGCAGTGATGCTATTAAGAACTTCAGAATGTCCAATCTGTCTCGGCAAGATCTTAAGCAGAGGCATGCTCCTTTGCATGACCTTAAAAATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006950 GO:0006970 GO:0006972 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0033036 GO:0033365 GO:0034613 GO:0042221 GO:0042538 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EHD_N

Protein Analysis

155

Amino Acids

17.59

Weight (kDa)

5.61

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EH PF12763 42 - 103 9.7e-06 EH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027805)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23610
malus_domestica MD05G1354400.v1.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 3 cut(s) 36, 175, 361
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 2 cut(s) 172, 358
AcsI RAATTY 1 cut(s) 127
AcuI CTGAAG 2 cut(s) 190, 376
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 367
AflII CTTAAG 2 cut(s) 236, 422
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 3 cut(s) 114, 134, 157
AjiI CACGTC 1 cut(s) 76
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 228, 414
AlwI GGATC 1 cut(s) 65
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 2 cut(s) 172, 358
ApoI RAATTY 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 113
BccI CCATC 2 cut(s) 164, 350
BcoDI GTCTC 2 cut(s) 228, 414
BfrI CTTAAG 2 cut(s) 236, 422
BfuAI ACCTGC 1 cut(s) 232
BglII AGATCT 2 cut(s) 232, 418
BisI GCNGC 2 cut(s) 175, 361
BlsI GCNGC 2 cut(s) 176, 362
BmgBI CACGTC 1 cut(s) 76
BmsI GCATC 4 cut(s) 85, 181, 313, 367
BplI GAGNNNNNCTC 2 cut(s) 421, 453
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse118I RCCGGY 1 cut(s) 66
BseAI TCCGGA 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 333
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 131, 276
BshFI GGCC 2 cut(s) 174, 360
BsiSI CCGG 2 cut(s) 67, 107
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 2 cut(s) 228, 414
BsnI GGCC 2 cut(s) 174, 360
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 3 cut(s) 57, 232, 418
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 3 cut(s) 36, 175, 361
BspANI GGCC 2 cut(s) 174, 360
BspCNI CTCAG 2 cut(s) 132, 277
BspEI TCCGGA 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 65
BspQI GCTCTTC 1 cut(s) 129
BspTI CTTAAG 2 cut(s) 236, 422
BsrFI RCCGGY 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 3 cut(s) 57, 232, 418
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 314
Bst6I CTCTTC 2 cut(s) 129, 254
BstAFI CTTAAG 2 cut(s) 236, 422
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 140, 285
BstDSI CCRYGG 1 cut(s) 333
BstKTI GATC 3 cut(s) 60, 235, 421
BstMAI GTCTC 2 cut(s) 228, 414
BstMBI GATC 3 cut(s) 57, 232, 418
BstMWI GCNNNNNNNGC 2 cut(s) 183, 369
BstNSI RCATGY 2 cut(s) 214, 437
BstX2I RGATCY 2 cut(s) 232, 418
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 2 cut(s) 232, 418
BsuRI GGCC 2 cut(s) 174, 360
BtgI CCRYGG 1 cut(s) 333
BtrI CACGTC 1 cut(s) 76
BtsI GCAGTG 2 cut(s) 193, 379
BtsIMutI CAGTG 4 cut(s) 193, 282, 319, 379
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 435
Cfr10I RCCGGY 1 cut(s) 66
Csp6I GTAC 1 cut(s) 79
CviAII CATG 4 cut(s) 211, 334, 434, 446
CviJI RGCY 3 cut(s) 139, 174, 360
CviKI_1 RGCY 3 cut(s) 139, 174, 360
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 140, 285
DpnI GATC 3 cut(s) 59, 234, 420
DpnII GATC 3 cut(s) 57, 232, 418
EaeI YGGCCR 2 cut(s) 172, 358
Eam1104I CTCTTC 2 cut(s) 129, 254
EarI CTCTTC 2 cut(s) 129, 254
Eco130I CCWWGG 1 cut(s) 333
Eco57I CTGAAG 2 cut(s) 190, 376
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 4 cut(s) 214, 337, 437, 449
FaiI YATR 8 cut(s) 151, 212, 302, 335, 341, 368, 435, 447
FatI CATG 4 cut(s) 210, 333, 433, 445
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 2 cut(s) 175, 361
Fsp4HI GCNGC 2 cut(s) 175, 361
GluI GCNGC 2 cut(s) 175, 361
HaeIII GGCC 2 cut(s) 174, 360
HapII CCGG 2 cut(s) 67, 107
Hin1II CATG 4 cut(s) 214, 337, 437, 449
HinfI GANTC 1 cut(s) 110
HpaII CCGG 2 cut(s) 67, 107
HphI GGTGA 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 64, 79
Hpy188I TCNGA 2 cut(s) 9, 395
Hpy188III TCNNGA 2 cut(s) 61, 107
Hpy8I GTNNAC 2 cut(s) 64, 79
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 304, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 369
HpyF3I CTNAG 2 cut(s) 140, 285
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 4 cut(s) 214, 337, 437, 449
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 3 cut(s) 57, 232, 418
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 442
LpnPI CCDG 6 cut(s) 80, 120, 137, 168, 227, 251
LweI GCATC 4 cut(s) 85, 181, 313, 367
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 71
MalI GATC 3 cut(s) 59, 234, 420
MboI GATC 3 cut(s) 57, 232, 418
MboII GAAGA 4 cut(s) 146, 173, 196, 271
MflI RGATCY 2 cut(s) 232, 418
MluCI AATT 3 cut(s) 27, 127, 217
MnlI CCTC 5 cut(s) 7, 25, 48, 255, 423
MroI TCCGGA 1 cut(s) 106
MseI TTAA 5 cut(s) 198, 237, 384, 423, 453
MslI CAYNNNNRTG 1 cut(s) 338
MspCI CTTAAG 2 cut(s) 236, 422
MspI CCGG 2 cut(s) 67, 107
MwoI GCNNNNNNNGC 2 cut(s) 183, 369
NcoI CCATGG 1 cut(s) 333
NdeII GATC 3 cut(s) 57, 232, 418
NlaIII CATG 4 cut(s) 214, 337, 437, 449
NmeAIII GCCGAG 2 cut(s) 205, 391
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 2 cut(s) 214, 437
PaeI GCATGC 1 cut(s) 437
PciSI GCTCTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 176, 362
PsuI RGATCY 2 cut(s) 232, 418
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 338
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 5 cut(s) 198, 237, 384, 423, 453
SatI GCNGC 2 cut(s) 175, 361
Sau3AI GATC 3 cut(s) 57, 232, 418
SetI ASST 5 cut(s) 18, 78, 141, 246, 453
SfaNI GCATC 4 cut(s) 85, 181, 313, 367
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 2 cut(s) 236, 422
SmoI CTYRAG 2 cut(s) 236, 422
SphI GCATGC 1 cut(s) 437
Sse9I AATT 3 cut(s) 27, 127, 217
SsiI CCGC 3 cut(s) 36, 175, 361
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 314
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 41
TasI AATT 3 cut(s) 27, 127, 217
TatI WGTACW 1 cut(s) 78
TauI GCSGC 2 cut(s) 177, 363
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 5 cut(s) 198, 237, 384, 423, 453
Tru9I TTAA 5 cut(s) 198, 237, 384, 423, 453
TscAI CASTG 4 cut(s) 193, 289, 319, 379
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 138, 280
TspGWI ACGGA 1 cut(s) 101
TspRI CASTG 4 cut(s) 193, 289, 319, 379
Vha464I CTTAAG 2 cut(s) 236, 422
XapI RAATTY 1 cut(s) 127
XceI RCATGY 2 cut(s) 214, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.