MD05G1354400.v1.1
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0027805
Physical Location & Seq
Forward (+)
47102759 .. 47103298
540 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1354400.v1.1.491

Sequence Viewer

Length: 138 bp
ATGTCGAGGCTTTCTCGTGAAGAACTCAAGCAGGTTTGGGCGATTGCTGACACGAAACGACAGGGATTTGTAGGTTTTTCGGAGTTCGTTACTGCAATGCAGGTTGTGCATGATTTTTGGGATATATTTCCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0005911 GO:0005929 GO:0006810 GO:0006886 GO:0006897 GO:0006996 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0009506 GO:0009719 GO:0009987 GO:0010008 GO:0010033 GO:0010830 GO:0010831 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0020016 GO:0020018 GO:0022008 GO:0022603 GO:0022607 GO:0030030 GO:0030031 GO:0030054 GO:0030154 GO:0030182 GO:0031090 GO:0031175 GO:0031253 GO:0031410 GO:0031901 GO:0031982 GO:0032386 GO:0032388 GO:0032456 GO:0032501 GO:0032502 GO:0032879 GO:0032956 GO:0032970 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042221 GO:0042886 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0045184 GO:0045595 GO:0045597 GO:0046907 GO:0048468 GO:0048518 GO:0048522 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051128 GO:0051130 GO:0051147 GO:0051149 GO:0051153 GO:0051155 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051493 GO:0051641 GO:0051649 GO:0051716 GO:0055037 GO:0055038 GO:0055044 GO:0060142 GO:0060143 GO:0060170 GO:0060271 GO:0060341 GO:0060627 GO:0061512 GO:0065003 GO:0065007 GO:0070727 GO:0070848 GO:0070887 GO:0070925 GO:0071310 GO:0071363 GO:0071495 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098590 GO:0098657 GO:0098805 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1901739 GO:1901741 GO:1990089 GO:1990090 GO:2001135 GO:2001137
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Dynamin_N EF-hand_4 EF-hand_7 EHD_N

Protein Analysis

46

Amino Acids

5.37

Weight (kDa)

5.56

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EH PF12763 2 - 39 9.2e-08 EH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027805)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g23610
malus_domestica MD05G1354400.v1.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 22, 91
BauI CACGAG 1 cut(s) 15
BfuAI ACCTGC 2 cut(s) 22, 91
BplI GAGNNNNNCTC 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 11
Bse3DI GCAATG 1 cut(s) 102
BseMI GCAATG 1 cut(s) 102
BspMI ACCTGC 2 cut(s) 22, 91
BsrDI GCAATG 1 cut(s) 102
BssSI CACGAG 1 cut(s) 15
Bst2BI CACGAG 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 106
BveI ACCTGC 2 cut(s) 22, 91
CviAII CATG 1 cut(s) 110
CviJI RGCY 1 cut(s) 10
CviKI_1 RGCY 1 cut(s) 10
FaeI CATG 1 cut(s) 113
FaiI YATR 2 cut(s) 111, 125
FatI CATG 1 cut(s) 109
Hin1II CATG 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 95, 100, 109
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
Hsp92II CATG 1 cut(s) 113
LpnPI CCDG 3 cut(s) 17, 47, 86
MaeIII GTNAC 1 cut(s) 88
MboII GAAGA 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 113
SetI ASST 3 cut(s) 36, 76, 105
SgeI CNNG 9 cut(s) 18, 27, 29, 40, 44, 64, 74, 113, 122
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
TaqI TCGA 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.