FvH4_4g02800
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
2515464 .. 2515667
204 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02800.t1

Sequence Viewer

Length: 204 bp
ATGGGCTTCCAGTTCAACCACGTCGGTGGCGGCACCAAGACCCGCCGCCCCATTACTTTAAACATGAAATTCGACTCCGACGCCCACTCCCCTCTCTGCCGCCTCGTCTCCGACTCCGACCCGGCCCAGGCCCACCGAATGTCCCTCCACGACACCCAGGCTTACATTGAGGCTGGAGAAGGAGCCGTCTCTGTTCTCGGCTAA

Protein Analysis

68

Amino Acids

7.23

Weight (kDa)

6.38

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022210)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AciI CCGC 4 cut(s) 30, 43, 46, 100
AcsI RAATTY 1 cut(s) 68
AcyI GRCGYC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 16
AjiI CACGTC 1 cut(s) 22
AjnI CCWGG 2 cut(s) 126, 156
AleI CACNNNNGTG 1 cut(s) 24
Alw26I GTCTC 2 cut(s) 112, 193
AoxI GGCC 2 cut(s) 123, 129
ApoI RAATTY 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 124, 130
AsuC2I CCSGG 1 cut(s) 122
BanI GGYRCC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 128, 158
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 112, 193
BisI GCNGC 3 cut(s) 31, 46, 100
BlsI GCNGC 3 cut(s) 32, 47, 101
Bme1390I CCNGG 3 cut(s) 122, 128, 158
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 2 cut(s) 124, 130
BmiI GGNNCC 2 cut(s) 34, 184
BmrFI CCNGG 3 cut(s) 122, 128, 158
BpmI CTGGAG 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 126, 156
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 10
BseBI CCWGG 2 cut(s) 128, 158
BseDI CCNNGG 2 cut(s) 126, 156
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 10
BshFI GGCC 2 cut(s) 125, 131
BshNI GGYRCC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 122
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 2 cut(s) 112, 193
BsmBI CGTCTC 2 cut(s) 112, 193
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 2 cut(s) 125, 131
BspACI CCGC 4 cut(s) 30, 43, 46, 100
BspANI GGCC 2 cut(s) 125, 131
BspLI GGNNCC 2 cut(s) 34, 184
BspT107I GGYRCC 1 cut(s) 32
BsrI ACTGG 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 126, 156
BssNI GRCGYC 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 128, 158
BstACI GRCGYC 1 cut(s) 81
BstMAI GTCTC 2 cut(s) 112, 193
BstNI CCWGG 2 cut(s) 128, 158
BstSCI CCNGG 3 cut(s) 120, 126, 156
BstXI CCANNNNNNTGG 1 cut(s) 26
BsuRI GGCC 2 cut(s) 125, 131
BtrI CACGTC 1 cut(s) 22
Cfr13I GGNCC 2 cut(s) 124, 130
CseI GACGC 1 cut(s) 89
CviAII CATG 1 cut(s) 64
CviJI RGCY 7 cut(s) 6, 125, 131, 161, 173, 185, 201
CviKI_1 RGCY 7 cut(s) 6, 125, 131, 161, 173, 185, 201
DraI TTTAAA 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 126, 156
Esp3I CGTCTC 2 cut(s) 112, 193
FaeI CATG 1 cut(s) 67
FaiI YATR 1 cut(s) 65
FaqI GGGAC 1 cut(s) 127
FatI CATG 1 cut(s) 63
FauI CCCGC 1 cut(s) 50
Fnu4HI GCNGC 3 cut(s) 31, 46, 100
Fsp4HI GCNGC 3 cut(s) 31, 46, 100
GluI GCNGC 3 cut(s) 31, 46, 100
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 2 cut(s) 125, 131
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 67
HinfI GANTC 2 cut(s) 74, 113
HpaII CCGG 1 cut(s) 122
Hpy188I TCNGA 3 cut(s) 79, 112, 118
Hpy99I CGWCG 2 cut(s) 26, 83
HpyAV CCTTC 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 67
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 7 cut(s) 23, 113, 135, 140, 143, 159, 170
MaeII ACGT 1 cut(s) 21
MluCI AATT 1 cut(s) 68
MlyI GAGTC 2 cut(s) 68, 107
MmeI TCCRAC 3 cut(s) 102, 135, 141
MnlI CCTC 4 cut(s) 102, 113, 155, 163
MseI TTAA 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 24
MspI CCGG 1 cut(s) 122
MspR9I CCNGG 3 cut(s) 122, 128, 158
MvaI CCWGG 2 cut(s) 128, 158
NciI CCSGG 1 cut(s) 122
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 2 cut(s) 34, 184
NmeAIII GCCGAG 1 cut(s) 177
OliI CACNNNNGTG 1 cut(s) 24
PkrI GCNGC 3 cut(s) 32, 47, 101
PleI GAGTC 2 cut(s) 68, 107
PpsI GAGTC 2 cut(s) 68, 107
Psp6I CCWGG 2 cut(s) 126, 156
PspGI CCWGG 2 cut(s) 126, 156
PspN4I GGNNCC 2 cut(s) 34, 184
PspPI GGNCC 2 cut(s) 124, 130
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 59
SatI GCNGC 3 cut(s) 31, 46, 100
Sau96I GGNCC 2 cut(s) 124, 130
SchI GAGTC 2 cut(s) 68, 107
ScrFI CCNGG 3 cut(s) 122, 128, 158
SetI ASST 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 1 cut(s) 68
SsiI CCGC 4 cut(s) 30, 43, 46, 100
StyD4I CCNGG 3 cut(s) 120, 126, 156
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 68
TauI GCSGC 3 cut(s) 33, 48, 102
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 80
XapI RAATTY 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.