Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016874.1

Orthogroup ID

OG0022210

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 688

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016874.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggatagggaagaacgaagcgaatgggaggagcagtgccgtctgtacgaggcctacaacgagctccacggcctcgcccaagccttcgacactcccttcgacgctcccgccgtcctcgtcgtcggccaccagacagatggcaagagcgcattggtcgaagccctcatgggcttccagttcaaccacgtcggcggcggcaccaagacccgccgccccatcactctccacatgaagtacgacccggactcccactcccctctctgccgcctcgtctccgactccgacccggcccaggcccaccccaagtccctccaggacatccaggcttacattgaggccgagaacatgcggctcgagaaggagccttgtctcttctccgccaaggagatcattattagagtggagtacaagtactgccccaacctcaccattatcgacactcctggcctcattgctcctgctcccggccccaaaaaccgagcattgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006996 GO:0007031 GO:0007623 GO:0008017 GO:0008092 GO:0008150 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009657 GO:0009658 GO:0009707 GO:0009941 GO:0009987 GO:0010020 GO:0015631 GO:0016020 GO:0016043 GO:0016462 GO:0016559 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0042579 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048511 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dynamin_N WD40

Protein Analysis

163

Amino Acids

18.32

Weight (kDa)

5.33

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022210)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02800
rosa_multiflora	Rmu_sc0006512.1_g000005 Rmu_sc0016873.1_g000001 Rmu_sc0016874.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	197
AciI	CCGC	8 cut(s)	108, 192, 195, 208, 211, 265, 349, 378
AcoI	YGGCCR	1 cut(s)	124
AfaI	GTAC	4 cut(s)	47, 236, 407, 413
AfiI	CCNNNNNNNGG	2 cut(s)	292, 464
AgsI	TTSAA	1 cut(s)	181
AjiI	CACGTC	1 cut(s)	187
AjnI	CCWGG	4 cut(s)	291, 312, 321, 442
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	2 cut(s)	277, 374
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	8 cut(s)	51, 70, 124, 288, 294, 336, 445, 466
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	289, 295, 467
AsuC2I	CCSGG	3 cut(s)	242, 287, 465
AsuHPI	GGTGA	1 cut(s)	418
AvaI	CYCGRG	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	66
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	2 cut(s)	131, 224
BceAI	ACGGC	3 cut(s)	24, 85, 95
BciT130I	CCWGG	4 cut(s)	293, 314, 323, 444
BcnI	CCSGG	3 cut(s)	242, 287, 465
BcoDI	GTCTC	2 cut(s)	277, 374
BisI	GCNGC	5 cut(s)	193, 196, 211, 265, 350
BlsI	GCNGC	5 cut(s)	194, 197, 212, 266, 351
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
BmeT110I	CYCGRG	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	3 cut(s)	289, 295, 467
BmiI	GGNNCC	3 cut(s)	199, 363, 469
BmrFI	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
BpmI	CTGGAG	1 cut(s)	296
BpuMI	CCSGG	3 cut(s)	242, 287, 465
BsaJI	CCNNGG	3 cut(s)	67, 291, 381
BsaXI	ACNNNNNCTCC	8 cut(s)	20, 50, 230, 236, 260, 266, 395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 464
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	2 cut(s)	450, 482
BseBI	CCWGG	4 cut(s)	293, 314, 323, 444
BseDI	CCNNGG	3 cut(s)	67, 291, 381
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	292, 464
BseMI	GCAATG	2 cut(s)	450, 482
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	1 cut(s)	44
BshFI	GGCC	8 cut(s)	53, 72, 126, 290, 296, 338, 447, 468
BshNI	GGYRCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	3 cut(s)	242, 287, 465
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	292, 464
BsmAI	GTCTC	2 cut(s)	277, 374
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	8 cut(s)	53, 72, 126, 290, 296, 338, 447, 468
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	387
BspACI	CCGC	8 cut(s)	108, 192, 195, 208, 211, 265, 349, 378
BspANI	GGCC	8 cut(s)	53, 72, 126, 290, 296, 338, 447, 468
BspLI	GGNNCC	3 cut(s)	199, 363, 469
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	450, 482
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	3 cut(s)	67, 291, 381
BssMI	GATC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	4 cut(s)	293, 314, 323, 444
Bst6I	CTCTTC	1 cut(s)	377
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	1 cut(s)	390
BstMAI	GTCTC	2 cut(s)	277, 374
BstMBI	GATC	1 cut(s)	387
BstNI	CCWGG	4 cut(s)	293, 314, 323, 444
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	7 cut(s)	240, 285, 291, 312, 321, 442, 463
BstXI	CCANNNNNNTGG	1 cut(s)	137
BsuRI	GGCC	8 cut(s)	53, 72, 126, 290, 296, 338, 447, 468
BtgI	CCRYGG	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	3 cut(s)	289, 295, 467
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	4 cut(s)	46, 235, 406, 412
CviAII	CATG	3 cut(s)	166, 229, 346
CviQI	GTAC	4 cut(s)	46, 235, 406, 412
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
EciI	GGCGGA	1 cut(s)	367
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	64
Eco88I	CYCGRG	1 cut(s)	353
EcoICRI	GAGCTC	1 cut(s)	64
EcoRII	CCWGG	4 cut(s)	291, 312, 321, 442
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	277
FaeI	CATG	3 cut(s)	169, 232, 349
FaiI	YATR	3 cut(s)	167, 230, 347
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	3 cut(s)	165, 228, 345
FauI	CCCGC	2 cut(s)	115, 215
Fnu4HI	GCNGC	5 cut(s)	193, 196, 211, 265, 350
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	66
Fsp4HI	GCNGC	5 cut(s)	193, 196, 211, 265, 350
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	5 cut(s)	193, 196, 211, 265, 350
GsuI	CTGGAG	1 cut(s)	296
HaeIII	GGCC	8 cut(s)	53, 72, 126, 290, 296, 338, 447, 468
HapII	CCGG	3 cut(s)	242, 287, 465
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	169, 232, 349
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	245, 278
HpaII	CCGG	3 cut(s)	242, 287, 465
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	2 cut(s)	277, 283
Hpy188III	TCNNGA	1 cut(s)	355
Hpy99I	CGWCG	4 cut(s)	104, 122, 125, 191
HpyAV	CCTTC	3 cut(s)	94, 106, 352
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	487
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	3 cut(s)	169, 232, 349
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	6 cut(s)	31, 69, 109, 361, 460, 466
MaeII	ACGT	1 cut(s)	186
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	2 cut(s)	23, 364
MhlI	GDGCHC	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	239, 272
MmeI	TCCRAC	2 cut(s)	300, 306
MspI	CCGG	3 cut(s)	242, 287, 465
MspR9I	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
MvaI	CCWGG	4 cut(s)	293, 314, 323, 444
NciI	CCSGG	3 cut(s)	242, 287, 465
NdeII	GATC	1 cut(s)	387
NlaIII	CATG	3 cut(s)	169, 232, 349
NlaIV	GGNNCC	3 cut(s)	199, 363, 469
NmeAIII	GCCGAG	1 cut(s)	364
NspI	RCATGY	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	353
PceI	AGGCCT	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfoI	TCCNGGA	1 cut(s)	312
PkrI	GCNGC	5 cut(s)	194, 197, 212, 266, 351
PleI	GAGTC	2 cut(s)	239, 272
PpsI	GAGTC	2 cut(s)	239, 272
Psp124BI	GAGCTC	1 cut(s)	66
Psp6I	CCWGG	4 cut(s)	291, 312, 321, 442
PspGI	CCWGG	4 cut(s)	291, 312, 321, 442
PspN4I	GGNNCC	3 cut(s)	199, 363, 469
PspPI	GGNCC	3 cut(s)	289, 295, 467
RsaI	GTAC	4 cut(s)	47, 236, 407, 413
RsaNI	GTAC	4 cut(s)	46, 235, 406, 412
SacI	GAGCTC	1 cut(s)	66
SatI	GCNGC	5 cut(s)	193, 196, 211, 265, 350
Sau3AI	GATC	1 cut(s)	387
Sau96I	GGNCC	3 cut(s)	289, 295, 467
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	2 cut(s)	239, 272
ScrFI	CCNGG	7 cut(s)	242, 287, 293, 314, 323, 444, 465
SduI	GDGCHC	1 cut(s)	66
SetI	ASST	3 cut(s)	66, 189, 426
Sfr274I	CTCGAG	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	8 cut(s)	108, 192, 195, 208, 211, 265, 349, 378
SstI	GAGCTC	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	7 cut(s)	240, 285, 291, 312, 321, 442, 463
StyI	CCWWGG	1 cut(s)	381
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	5 cut(s)	87, 99, 156, 354, 435
TatI	WGTACW	2 cut(s)	405, 411
TauI	GCSGC	5 cut(s)	195, 198, 213, 267, 352
TscAI	CASTG	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	41
XceI	RCATGY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	134
XhoI	CTCGAG	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.