FvH4_4g05870

peptidyl-prolyl cis-trans isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0027888
Physical Location & Seq
Forward (+)
5225976 .. 5227288
1313 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05870.t1

Sequence Viewer

Length: 675 bp
ATGGATCGTGAACGGAGCACCGGTCTCCGATTGCAAATACATGCACTCTATTGGAGCTCTGGTGAACACTGCTCCCCCTCAATTGATACCTCCTCTCCGTTGCGCTCAGCCGCCACATTTCTCTCTCCCTCTCCATCTCTGACTTGGTCCTTCTTCGTCATCGCCGTCCAAGTCTTCGATCGTCTTCTTCTTTTCAAGGTAATCGGAGAGGATCTAATAGCTTGTTTTCTGTTTAAGCATCTTTTCTATTGTGTAATTCTGCTAGAGATTGAAGTTTCTGGTTTGAATTTGAGAGCGATTGAAGTATATGTGTTTGATCTGGAAGATTTTGTGATGATTCTGCTGTGTGTGGTGCTTGGAGTTAGATCTGGTGATTTATGTGGTTTTGTGATATGTAATGCTGAAGGAAAGTATTACAATGGGTGTCTCTTTCACACGGTCCATAAGGATTTTACTGCACAAACTGGTGATCCAACTAGAACGGGTTCTAGTGTCAGTCTACTTCAACTATCAGAATTGACTGGCTCTTATATGACACTATACACTATAGACAAAGATGATGATGATGATAAAGATTATAGTAGGAAGAGAACCACAGATGGTGATACACCCACAGAAAGGAGCAGGGATAGAGAAGGCAGAGAAAGAAGTGCAGCTAATGGTAGCCCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030162 GO:0030163 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

225

Amino Acids

25.1

Weight (kDa)

5.01

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027888)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g05870 FvH4_5g22410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 499
AciI CCGC 1 cut(s) 111
AclWI GGATC 3 cut(s) 12, 219, 464
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 423
AfiI CCNNNNNNNGG 1 cut(s) 618
AgeI ACCGGT 1 cut(s) 20
AgsI TTSAA 5 cut(s) 196, 272, 286, 302, 506
AluBI AGCT 3 cut(s) 57, 221, 656
AluI AGCT 3 cut(s) 57, 221, 656
Alw21I GWGCWC 2 cut(s) 20, 59
Alw26I GTCTC 2 cut(s) 29, 431
AlwI GGATC 3 cut(s) 12, 219, 464
ApeKI GCWGC 1 cut(s) 653
ApoI RAATTY 1 cut(s) 286
AsiGI ACCGGT 1 cut(s) 20
Asp700I GAANNNNTTC 1 cut(s) 484
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 147, 439
AsuHPI GGTGA 4 cut(s) 74, 383, 479, 614
AvaII GGWCC 2 cut(s) 147, 439
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 166, 176
Bbv12I GWGCWC 2 cut(s) 20, 59
BbvI GCAGC 1 cut(s) 665
BccI CCATC 2 cut(s) 142, 593
BceAI ACGGC 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 29, 431
BfaI CTAG 3 cut(s) 263, 477, 489
BfmI CTRYAG 1 cut(s) 546
BglII AGATCT 1 cut(s) 365
BisI GCNGC 2 cut(s) 111, 654
BlpI GCTNAGC 1 cut(s) 106
BlsI GCNGC 2 cut(s) 112, 655
Bme18I GGWCC 2 cut(s) 147, 439
BmgT120I GGNCC 2 cut(s) 147, 439
BmsI GCATC 1 cut(s) 247
BpiI GAAGAC 2 cut(s) 166, 176
Bpu1102I GCTNAGC 1 cut(s) 106
BsaI GGTCTC 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 20
BsaXI ACNNNNNCTCC 6 cut(s) 7, 37, 46, 76, 79, 109
Bsc4I CCNNNNNNNGG 1 cut(s) 618
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 469, 526
BseLI CCNNNNNNNGG 1 cut(s) 618
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 469, 526
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 1 cut(s) 665
BsgI GTGCAG 2 cut(s) 441, 672
Bsh1285I CGRYCG 1 cut(s) 181
BshTI ACCGGT 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 181
BsiHKAI GWGCWC 2 cut(s) 20, 59
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 618
BsmAI GTCTC 2 cut(s) 29, 431
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 20, 59
Bsp143I GATC 6 cut(s) 4, 178, 211, 316, 365, 469
Bsp1720I GCTNAGC 1 cut(s) 106
BspACI CCGC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 119
BspPI GGATC 3 cut(s) 12, 219, 464
BspTNI GGTCTC 1 cut(s) 29
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 2 cut(s) 469, 526
BssAI RCCGGY 1 cut(s) 20
BssMI GATC 6 cut(s) 4, 178, 211, 316, 365, 469
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 1 cut(s) 581
BstDEI CTNAG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 6 cut(s) 7, 181, 214, 319, 368, 472
BstMAI GTCTC 2 cut(s) 29, 431
BstMBI GATC 6 cut(s) 4, 178, 211, 316, 365, 469
BstMCI CGRYCG 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 546
BstV1I GCAGC 1 cut(s) 665
BstV2I GAAGAC 2 cut(s) 166, 176
BstX2I RGATCY 2 cut(s) 211, 365
BstYI RGATCY 2 cut(s) 211, 365
BtgZI GCGATG 1 cut(s) 145
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 67
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 2 cut(s) 147, 439
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 1 cut(s) 41
CviJI RGCY 6 cut(s) 57, 110, 221, 525, 656, 666
CviKI_1 RGCY 6 cut(s) 57, 110, 221, 525, 656, 666
DdeI CTNAG 1 cut(s) 106
DpnI GATC 6 cut(s) 6, 180, 213, 318, 367, 471
DpnII GATC 6 cut(s) 4, 178, 211, 316, 365, 469
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 147, 439
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 423
EcoICRI GAGCTC 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 1 cut(s) 44
FatI CATG 1 cut(s) 40
FblI GTMKAC 1 cut(s) 499
Fnu4HI GCNGC 2 cut(s) 111, 654
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 111, 654
FspBI CTAG 3 cut(s) 263, 477, 489
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 111, 654
HapII CCGG 1 cut(s) 21
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 44
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 337
HpaII CCGG 1 cut(s) 21
HphI GGTGA 4 cut(s) 74, 383, 479, 614
Hpy166II GTNNAC 3 cut(s) 11, 65, 500
Hpy188I TCNGA 4 cut(s) 29, 141, 206, 514
Hpy188III TCNNGA 2 cut(s) 8, 320
Hpy8I GTNNAC 3 cut(s) 11, 65, 500
HpyAV CCTTC 3 cut(s) 160, 398, 629
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4V TGCA 4 cut(s) 34, 44, 458, 653
HpyF3I CTNAG 1 cut(s) 106
Hsp92II CATG 1 cut(s) 44
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 6 cut(s) 4, 178, 211, 316, 365, 469
LmnI GCTCC 4 cut(s) 15, 54, 77, 621
LpnPI CCDG 8 cut(s) 34, 45, 264, 305, 354, 450, 507, 610
Lsp1109I GCAGC 1 cut(s) 665
LweI GCATC 1 cut(s) 247
MaeI CTAG 3 cut(s) 263, 477, 489
MalI GATC 6 cut(s) 6, 180, 213, 318, 367, 471
MboI GATC 6 cut(s) 4, 178, 211, 316, 365, 469
MboII GAAGA 6 cut(s) 145, 166, 176, 179, 335, 598
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 2 cut(s) 211, 365
MhlI GDGCHC 2 cut(s) 20, 59
MluCI AATT 4 cut(s) 81, 255, 286, 515
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 5 cut(s) 88, 100, 103, 139, 202
MroXI GAANNNNTTC 1 cut(s) 484
MseI TTAA 1 cut(s) 234
MspI CCGG 1 cut(s) 21
MunI CAATTG 1 cut(s) 81
NdeII GATC 6 cut(s) 4, 178, 211, 316, 365, 469
NlaIII CATG 1 cut(s) 44
NspI RCATGY 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 484
PfeI GAWTC 1 cut(s) 337
PflFI GACNNNGTC 1 cut(s) 145
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 2 cut(s) 112, 655
Ple19I CGATCG 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 59
PspPI GGNCC 2 cut(s) 147, 439
PsuI RGATCY 2 cut(s) 211, 365
PsyI GACNNNGTC 1 cut(s) 145
PvuI CGATCG 1 cut(s) 181
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 2 cut(s) 111, 654
Sau3AI GATC 6 cut(s) 4, 178, 211, 316, 365, 469
Sau96I GGNCC 2 cut(s) 147, 439
SduI GDGCHC 2 cut(s) 20, 59
SetI ASST 5 cut(s) 59, 92, 201, 223, 658
SfaNI GCATC 1 cut(s) 247
SfcI CTRYAG 1 cut(s) 546
SinI GGWCC 2 cut(s) 147, 439
Sse9I AATT 4 cut(s) 81, 255, 286, 515
SsiI CCGC 1 cut(s) 111
SspMI CTAG 3 cut(s) 263, 477, 489
SstI GAGCTC 1 cut(s) 59
TaaI ACNGT 1 cut(s) 439
TaqI TCGA 1 cut(s) 177
TasI AATT 4 cut(s) 81, 255, 286, 515
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 74
TseI GCWGC 1 cut(s) 653
TspDTI ATGAA 1 cut(s) 660
TspGWI ACGGA 2 cut(s) 28, 87
TspRI CASTG 1 cut(s) 74
Tth111I GACNNNGTC 1 cut(s) 145
VpaK11BI GGWCC 2 cut(s) 147, 439
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 44
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 499
XmnI GAANNNNTTC 1 cut(s) 484
XspI CTAG 3 cut(s) 263, 477, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.