Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0027888

Physical Location & Seq

Genomic Coordinates Reverse (-)

13779606 .. 13783537

Gene Structure 3932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGATTGTGAACGGAGCTTTGGTCTCCGATTGCAAATACATGCACTTCATCGGAGCTCCGGCGAACACCGCTTGCCCTCAACTGATACCTCCTCTCCGCTACGCTCAGCCGTCACATCTCTCTCTCCCTCTCCATCTCCGGCTTGGTCCTTCTTCTTCATCGCCGTCCAAGTCTTTGATCGTCTTCTTCTTTTCAAGAAGTGGACTCCCGACGAAGATGAGAAACTAATCAAGGTTGTTGCCCTTCATGGTGCAAAGAAATGGACCTCAATAGCCTCCAAAGCAGGGCTGAATCGGAGCAGCAAGAGTTGCAAGCTGAGATGGGTGAACCATCTAAGACCCAACATCAAGAGAGGTGACATGTCTGAACAGGAAGCGGACTTGATTATTAGGCGGCACAAGCTTCTTGGAAATAGGTGGTCTTTGATTGCGGGGAGATTGCCGGGTCGAACAGACAATAAAGAGAAGCAAAGTAACAATGCAGCTAATGGGACGATACAATTTCCGGTAGTAGATGAGAAACTAAGTGTAGCAGATGATGATCAGAAGGTCCATGTGGAAATGAAGCAAGAGTGCTTGGCAGCAGCAGCAGTGGGTACAAGTGCGGCTCTAATCAAGAAAGAGGAGGTTACATTATCAGTTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009628 GO:0009698 GO:0009699 GO:0009889 GO:0009987 GO:0010023 GO:0010468 GO:0010556 GO:0016053 GO:0017144 GO:0018130 GO:0018958 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046189 GO:0046394 GO:0046483 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

216

Amino Acids

23.96

Weight (kDa)

9.64

Isoelectric Point (pI)

59.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	66 - 112	4.1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	68 - 126	4.8e-15	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	118 - 153	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0027888)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g05870 FvH4_5g22410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	70, 98, 377, 394, 431, 605
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	5 cut(s)	18, 57, 316, 403, 485
AluI	AGCT	5 cut(s)	18, 57, 316, 403, 485
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	29
ApeKI	GCWGC	5 cut(s)	300, 482, 581, 584, 587
AspS9I	GGNCC	3 cut(s)	147, 264, 550
AsuC2I	CCSGG	1 cut(s)	444
AsuHPI	GGTGA	2 cut(s)	337, 368
AvaII	GGWCC	3 cut(s)	147, 264, 550
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	5 cut(s)	312, 494, 593, 596, 599
BccI	CCATC	3 cut(s)	142, 315, 339
BceAI	ACGGC	2 cut(s)	95, 149
BclI	TGATCA	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	29
BisI	GCNGC	7 cut(s)	301, 395, 483, 582, 585, 588, 606
BlpI	GCTNAGC	1 cut(s)	106
BlsI	GCNGC	7 cut(s)	302, 396, 484, 583, 586, 589, 607
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	3 cut(s)	147, 264, 550
BmgT120I	GGNCC	3 cut(s)	147, 264, 550
BmrFI	CCNGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	176
Bpu1102I	GCTNAGC	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	540
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	120, 308
BseRI	GAGGAG	2 cut(s)	82, 638
BseXI	GCAGC	5 cut(s)	312, 494, 593, 596, 599
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	4 cut(s)	60, 140, 443, 506
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	505
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	178, 541
Bsp1720I	GCTNAGC	1 cut(s)	106
BspACI	CCGC	6 cut(s)	70, 98, 377, 394, 431, 605
BspCNI	CTCAG	2 cut(s)	119, 309
BspTNI	GGTCTC	1 cut(s)	29
BssMI	GATC	2 cut(s)	178, 541
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	74, 314
BstDEI	CTNAG	4 cut(s)	106, 317, 335, 524
BstKTI	GATC	2 cut(s)	181, 544
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	2 cut(s)	178, 541
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 281, 309, 400, 587
BstNSI	RCATGY	2 cut(s)	44, 364
BstSCI	CCNGG	1 cut(s)	442
BstV1I	GCAGC	5 cut(s)	312, 494, 593, 596, 599
BstV2I	GAAGAC	1 cut(s)	176
BtgZI	GCGATG	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	1 cut(s)	597
Cac8I	GCNNGC	2 cut(s)	74, 314
Cfr13I	GGNCC	3 cut(s)	147, 264, 550
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	4 cut(s)	41, 248, 361, 554
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	4 cut(s)	106, 317, 335, 524
DpnI	GATC	2 cut(s)	180, 543
DpnII	GATC	2 cut(s)	178, 541
Ecl136II	GAGCTC	1 cut(s)	57
Eco24I	GRGCYC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	3 cut(s)	147, 264, 550
Eco53kI	GAGCTC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	57
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	4 cut(s)	44, 251, 364, 557
FaiI	YATR	5 cut(s)	42, 249, 362, 555, 646
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	4 cut(s)	40, 247, 360, 553
FauI	CCCGC	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	541
Fnu4HI	GCNGC	7 cut(s)	301, 395, 483, 582, 585, 588, 606
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	7 cut(s)	301, 395, 483, 582, 585, 588, 606
GluI	GCNGC	7 cut(s)	301, 395, 483, 582, 585, 588, 606
HapII	CCGG	4 cut(s)	60, 140, 443, 506
Hin1II	CATG	4 cut(s)	44, 251, 364, 557
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	2 cut(s)	205, 292
HpaII	CCGG	4 cut(s)	60, 140, 443, 506
HphI	GGTGA	2 cut(s)	337, 368
Hpy166II	GTNNAC	3 cut(s)	11, 204, 328
Hpy188I	TCNGA	5 cut(s)	29, 54, 297, 367, 546
Hpy188III	TCNNGA	4 cut(s)	196, 209, 349, 616
Hpy8I	GTNNAC	3 cut(s)	11, 204, 328
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	160, 254, 541
HpyCH4V	TGCA	5 cut(s)	34, 44, 254, 312, 482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 281, 309, 400, 587
HpyF3I	CTNAG	4 cut(s)	106, 317, 335, 524
Hsp92II	CATG	4 cut(s)	44, 251, 364, 557
Ksp22I	TGATCA	1 cut(s)	541
Kzo9I	GATC	2 cut(s)	178, 541
LmnI	GCTCC	4 cut(s)	15, 54, 62, 297
LpnPI	CCDG	6 cut(s)	73, 153, 270, 356, 456, 519
Lsp1109I	GCAGC	5 cut(s)	312, 494, 593, 596, 599
MaeIII	GTNAC	5 cut(s)	112, 356, 473, 628, 640
MalI	GATC	2 cut(s)	180, 543
MboI	GATC	2 cut(s)	178, 541
MboII	GAAGA	5 cut(s)	145, 148, 176, 179, 227
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	199
MnlI	CCTC	9 cut(s)	88, 100, 103, 139, 277, 286, 347, 616, 619
MspI	CCGG	4 cut(s)	60, 140, 443, 506
MspR9I	CCNGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	5 cut(s)	69, 281, 309, 400, 587
NciI	CCSGG	1 cut(s)	444
NdeII	GATC	2 cut(s)	178, 541
NlaIII	CATG	4 cut(s)	44, 251, 364, 557
NmuCI	GTSAC	2 cut(s)	112, 356
NspI	RCATGY	2 cut(s)	44, 364
PciI	ACATGT	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	7 cut(s)	302, 396, 484, 583, 586, 589, 607
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PscI	ACATGT	1 cut(s)	360
Psp124BI	GAGCTC	1 cut(s)	59
PspPI	GGNCC	3 cut(s)	147, 264, 550
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	59
SatI	GCNGC	7 cut(s)	301, 395, 483, 582, 585, 588, 606
Sau3AI	GATC	2 cut(s)	178, 541
Sau96I	GGNCC	3 cut(s)	147, 264, 550
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	59
SinI	GGWCC	3 cut(s)	147, 264, 550
Sse9I	AATT	1 cut(s)	500
SsiI	CCGC	6 cut(s)	70, 98, 377, 394, 431, 605
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	442
TaqI	TCGA	1 cut(s)	448
TasI	AATT	1 cut(s)	500
TauI	GCSGC	2 cut(s)	397, 608
TfiI	GAWTC	1 cut(s)	292
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	2 cut(s)	112, 356
TseI	GCWGC	5 cut(s)	300, 482, 581, 584, 587
Tsp45I	GTSAC	2 cut(s)	112, 356
TspDTI	ATGAA	4 cut(s)	38, 148, 236, 578
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	3 cut(s)	147, 264, 550
XceI	RCATGY	2 cut(s)	44, 364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.