FvH4_4g09083

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0024118
Physical Location & Seq
Forward (+)
10312370 .. 10323872
11503 bp
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UTR
Exon/CDS
Intron
FvH4_4g09083.t1

Sequence Viewer

Length: 633 bp
ATGAGCAAAACATTGTACAACATGGACAAGAGCTGGATGCAATTAGGGAAGGGGTCCCCAGTTTATATGAGAGGCATTTTTTATTTTAGTGAGTTCGTGCGTCTACATAGTCCTCAAGACAAAGTTATTCACATATGTCTATGCAACAAATGTCTCAATCGGAAATCAGTAACATATGAAGACATGTATTCTCACTTGGCACTAAACGGTATTTGTCCTAGTTATACCACATGGACATGGCACGGCGAAAATCAAGTTCAAATGCCTACACTTGCAGACATTCAAGCACAACATAATCAGCAGGCAGGATCTTCTAATGCTAGTTATAGGGACCCTGCTGTGATGAACCTCTTAAACGATGTCTTCCTGTTCACCGCCTCTGGATACCAGGAAAATGTTGTTTATGACAACGCCCCTGACACTTTCCCTAATGTCTCCCACATTGACTACAACAGTGATTACGATAAGTACAACAGCCTTGTACGGGAAGTACAAACCCCATTGTATCCTGGCAGTGAGCATACTGTGTTGGGTACCGTCATGGAGCACATGCAGATAAAAAACAAGCGGGGAAAGACTGACGTATGTTTTGATGAGAATATCACTTATGAAGAAAGTGCTTCCCAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

211

Amino Acids

24.15

Weight (kDa)

5.7

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 10 - 83 7.7e-16 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09083 FvH4_4g09083
pyrus_communis pycom12g11770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 533
AccB1I GGYRCC 1 cut(s) 533
AccI GTMKAC 1 cut(s) 103
AciI CCGC 2 cut(s) 375, 568
AclWI GGATC 1 cut(s) 316
AfaI GTAC 5 cut(s) 17, 470, 483, 492, 535
AfiI CCNNNNNNNGG 1 cut(s) 484
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 2 cut(s) 260, 284
AjnI CCWGG 2 cut(s) 387, 508
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 2 cut(s) 158, 439
AlwI GGATC 1 cut(s) 316
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
Asp718I GGTACC 1 cut(s) 533
AspS9I GGNCC 2 cut(s) 54, 331
AsuHPI GGTGA 1 cut(s) 364
AvaII GGWCC 2 cut(s) 54, 331
BanI GGYRCC 1 cut(s) 533
BbsI GAAGAC 2 cut(s) 186, 355
Bbv12I GWGCWC 1 cut(s) 549
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 389, 510
BciVI GTATCC 2 cut(s) 377, 516
BcoDI GTCTC 2 cut(s) 158, 439
BfaI CTAG 2 cut(s) 219, 321
BfuI GTATCC 2 cut(s) 377, 516
Bme1390I CCNGG 2 cut(s) 389, 510
Bme18I GGWCC 2 cut(s) 54, 331
BmgT120I GGNCC 2 cut(s) 54, 331
BmiI GGNNCC 5 cut(s) 55, 56, 332, 333, 535
BmrFI CCNGG 2 cut(s) 389, 510
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 53
BpiI GAAGAC 2 cut(s) 186, 355
BpuEI CTTGAG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 59
BseBI CCWGG 2 cut(s) 389, 510
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 484
BseNI ACTGG 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 533
BsiHKAI GWGCWC 1 cut(s) 549
BslFI GGGAC 2 cut(s) 40, 344
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 2 cut(s) 158, 439
BsmFI GGGAC 2 cut(s) 40, 344
Bsp1286I GDGCHC 1 cut(s) 549
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 1 cut(s) 308
BspACI CCGC 2 cut(s) 375, 568
BspLI GGNNCC 5 cut(s) 55, 56, 332, 333, 535
BspPI GGATC 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 533
BsrGI TGTACA 1 cut(s) 15
BsrI ACTGG 1 cut(s) 59
BssMI GATC 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 389, 510
Bst4CI ACNGT 4 cut(s) 209, 455, 526, 538
BstAUI TGTACA 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 303
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 1 cut(s) 311
BstMAI GTCTC 2 cut(s) 158, 439
BstMBI GATC 1 cut(s) 308
BstNI CCWGG 2 cut(s) 389, 510
BstNSI RCATGY 2 cut(s) 187, 553
BstSCI CCNGG 2 cut(s) 387, 508
BstV2I GAAGAC 2 cut(s) 186, 355
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuI GTATCC 2 cut(s) 377, 516
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 520
BtsIMutI CAGTG 2 cut(s) 460, 520
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 54, 331
CseI GACGC 1 cut(s) 89
Csp6I GTAC 5 cut(s) 16, 469, 482, 491, 534
CviAII CATG 6 cut(s) 22, 184, 231, 237, 541, 550
CviJI RGCY 2 cut(s) 33, 477
CviKI_1 RGCY 2 cut(s) 33, 477
CviQI GTAC 5 cut(s) 16, 469, 482, 491, 534
DpnI GATC 1 cut(s) 310
DpnII GATC 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 54, 331
EcoO109I RGGNCCY 2 cut(s) 54, 331
EcoRII CCWGG 2 cut(s) 387, 508
FaeI CATG 6 cut(s) 25, 187, 234, 240, 544, 553
FaqI GGGAC 2 cut(s) 40, 344
FatI CATG 6 cut(s) 21, 183, 230, 236, 540, 549
FauI CCCGC 1 cut(s) 561
FauNDI CATATG 2 cut(s) 134, 175
FblI GTMKAC 1 cut(s) 103
FokI GGATG 1 cut(s) 49
FspBI CTAG 2 cut(s) 219, 321
HgaI GACGC 1 cut(s) 89
Hin1II CATG 6 cut(s) 25, 187, 234, 240, 544, 553
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 2 cut(s) 104, 372
Hpy188I TCNGA 1 cut(s) 162
Hpy188III TCNNGA 2 cut(s) 116, 381
Hpy8I GTNNAC 2 cut(s) 104, 372
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 4 cut(s) 209, 455, 526, 538
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 4 cut(s) 40, 144, 275, 553
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 6 cut(s) 25, 187, 234, 240, 544, 553
KflI GGGWCCC 2 cut(s) 54, 331
KpnI GGTACC 1 cut(s) 537
Kzo9I GATC 1 cut(s) 308
LmnI GCTCC 1 cut(s) 544
LweI GCATC 1 cut(s) 27
MaeI CTAG 2 cut(s) 219, 321
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 310
MboI GATC 1 cut(s) 308
MboII GAAGA 4 cut(s) 191, 303, 355, 623
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 1 cut(s) 41
MnlI CCTC 4 cut(s) 65, 123, 359, 388
MseI TTAA 1 cut(s) 353
MslI CAYNNNNRTG 1 cut(s) 235
MspR9I CCNGG 2 cut(s) 389, 510
MvaI CCWGG 2 cut(s) 389, 510
NdeI CATATG 2 cut(s) 134, 175
NdeII GATC 1 cut(s) 308
NlaIII CATG 6 cut(s) 25, 187, 234, 240, 544, 553
NlaIV GGNNCC 5 cut(s) 55, 56, 332, 333, 535
NspI RCATGY 2 cut(s) 187, 553
PciI ACATGT 1 cut(s) 183
PpuMI RGGWCCY 2 cut(s) 54, 331
PscI ACATGT 1 cut(s) 183
Psp5II RGGWCCY 2 cut(s) 54, 331
Psp6I CCWGG 2 cut(s) 387, 508
PspGI CCWGG 2 cut(s) 387, 508
PspN4I GGNNCC 5 cut(s) 55, 56, 332, 333, 535
PspPI GGNCC 2 cut(s) 54, 331
PspPPI RGGWCCY 2 cut(s) 54, 331
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 5 cut(s) 17, 470, 483, 492, 535
RsaNI GTAC 5 cut(s) 16, 469, 482, 491, 534
RseI CAYNNNNRTG 1 cut(s) 235
SaqAI TTAA 1 cut(s) 353
Sau3AI GATC 1 cut(s) 308
Sau96I GGNCC 2 cut(s) 54, 331
ScrFI CCNGG 2 cut(s) 389, 510
SduI GDGCHC 1 cut(s) 549
SetI ASST 4 cut(s) 35, 351, 585, 632
SfaNI GCATC 1 cut(s) 27
SinI GGWCC 2 cut(s) 54, 331
SmiMI CAYNNNNRTG 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 114
SmoI CTYRAG 1 cut(s) 114
Sse9I AATT 1 cut(s) 41
SsiI CCGC 2 cut(s) 375, 568
SspMI CTAG 2 cut(s) 219, 321
StyD4I CCNGG 2 cut(s) 387, 508
TaaI ACNGT 4 cut(s) 209, 455, 526, 538
TaiI ACGT 1 cut(s) 585
TasI AATT 1 cut(s) 41
TatI WGTACW 3 cut(s) 15, 468, 490
Tru1I TTAA 1 cut(s) 353
Tru9I TTAA 1 cut(s) 353
TscAI CASTG 2 cut(s) 460, 520
TspDTI ATGAA 3 cut(s) 192, 359, 624
TspRI CASTG 2 cut(s) 460, 520
VpaK11BI GGWCC 2 cut(s) 54, 331
XceI RCATGY 2 cut(s) 187, 553
XmiI GTMKAC 1 cut(s) 103
XspI CTAG 2 cut(s) 219, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.