pycom12g11770

ATP-dependent microtubule motor activity, plus-end-directed

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0024118
Physical Location & Seq
Forward (+)
14170989 .. 14171411
423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g11770.1

Sequence Viewer

Length: 423 bp
ATGAACAAAAGTTGGGCCACTTTGAATCCGTTTACAAAGGATTCCAGAACAGGGCTAGCAGAATTTATCTCAAACTCATTGGAAGTATCTTCTCATGATGGCAACATCAAATGTCCATGTGCTAAATGCTTGAATAGGTTATGGTTGAGTAACAATGAAGTCGCAGTGCATCTAATTGTTGAAGGTATGGACCGTTCATACTTGGAAGGCCCATGGGTATGGCATGGAGAGACATTTGGTGACCCTCTTCCAAGTAGCCAAGTTGCACAACAAATTGCTGGTGTTAATACTCCTCATTGTGAACTAGGCCTCTTGCTTGAAGATATTTCTCAGGTCCTAGTGGAATGGGTGGCATGCCATTTAATAATCATACCCATCAGGAAGCTCCAATACCTGCATATACTCGTAAGTTTCAAGCCATAA

Protein Analysis

141

Amino Acids

15.69

Weight (kDa)

5.81

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 3 - 77 4.2e-17 Transposase-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g09083 FvH4_4g09083
pyrus_communis pycom12g11770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 402
AcsI RAATTY 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 5 cut(s) 25, 133, 182, 320, 415
AluBI AGCT 1 cut(s) 385
AluI AGCT 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 3 cut(s) 15, 208, 307
ApoI RAATTY 1 cut(s) 62
AspS9I GGNCC 4 cut(s) 15, 190, 209, 334
AsuHPI GGTGA 1 cut(s) 251
AsuNHI GCTAGC 1 cut(s) 55
AvaII GGWCC 2 cut(s) 190, 334
BarI GAAGNNNNNNTAC 2 cut(s) 374, 406
BccI CCATC 2 cut(s) 92, 383
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 3 cut(s) 56, 305, 338
BfuAI ACCTGC 1 cut(s) 402
Bme18I GGWCC 2 cut(s) 190, 334
BmgT120I GGNCC 4 cut(s) 15, 190, 209, 334
BmsI GCATC 1 cut(s) 178
BmtI GCTAGC 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 344
BseRI GAGGAG 1 cut(s) 282
BshFI GGCC 3 cut(s) 17, 210, 309
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 3 cut(s) 17, 210, 309
Bsp19I CCATGG 1 cut(s) 212
BspANI GGCC 3 cut(s) 17, 210, 309
BspCNI CTCAG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 402
BspOI GCTAGC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 212
BssT1I CCWWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 252
BstC8I GCNNGC 2 cut(s) 57, 355
BstDEI CTNAG 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 212
BstEII GGTNACC 1 cut(s) 239
BstMAI GTCTC 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 357
BstPI GGTNACC 1 cut(s) 239
BstXI CCANNNNNNTGG 1 cut(s) 219
BsuRI GGCC 3 cut(s) 17, 210, 309
BtgI CCRYGG 1 cut(s) 212
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 402
Cac8I GCNNGC 2 cut(s) 57, 355
CciI TCATGA 1 cut(s) 94
Cfr13I GGNCC 4 cut(s) 15, 190, 209, 334
CviAII CATG 5 cut(s) 95, 117, 213, 224, 354
CviJI RGCY 7 cut(s) 17, 55, 210, 258, 309, 385, 418
CviKI_1 RGCY 7 cut(s) 17, 55, 210, 258, 309, 385, 418
DdeI CTNAG 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 212
Eco147I AGGCCT 1 cut(s) 309
Eco47I GGWCC 2 cut(s) 190, 334
Eco91I GGTNACC 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaeI CATG 5 cut(s) 98, 120, 216, 227, 357
FatI CATG 5 cut(s) 94, 116, 212, 223, 353
FspBI CTAG 3 cut(s) 56, 305, 338
HaeIII GGCC 3 cut(s) 17, 210, 309
Hin1II CATG 5 cut(s) 98, 120, 216, 227, 357
HinfI GANTC 2 cut(s) 25, 41
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 33, 302
Hpy188III TCNNGA 3 cut(s) 45, 95, 379
Hpy8I GTNNAC 2 cut(s) 33, 302
HpyAV CCTTC 2 cut(s) 176, 200
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 169, 266, 397
HpyF3I CTNAG 1 cut(s) 330
Hsp92II CATG 5 cut(s) 98, 120, 216, 227, 357
LmnI GCTCC 1 cut(s) 390
LpnPI CCDG 6 cut(s) 36, 58, 264, 317, 364, 407
LweI GCATC 1 cut(s) 178
MaeI CTAG 3 cut(s) 56, 305, 338
MaeIII GTNAC 2 cut(s) 149, 239
MboII GAAGA 3 cut(s) 81, 239, 332
MluCI AATT 3 cut(s) 62, 174, 273
MnlI CCTC 3 cut(s) 255, 303, 320
MseI TTAA 2 cut(s) 285, 362
MslI CAYNNNNRTG 1 cut(s) 217
NcoI CCATGG 1 cut(s) 212
NheI GCTAGC 1 cut(s) 55
NlaIII CATG 5 cut(s) 98, 120, 216, 227, 357
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 357
PaeI GCATGC 1 cut(s) 357
PagI TCATGA 1 cut(s) 94
PceI AGGCCT 1 cut(s) 309
PfeI GAWTC 2 cut(s) 25, 41
PpuMI RGGWCCY 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 334
PspEI GGTNACC 1 cut(s) 239
PspPI GGNCC 4 cut(s) 15, 190, 209, 334
PspPPI RGGWCCY 1 cut(s) 334
PsrI GAACNNNNNNTAC 2 cut(s) 178, 210
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 2 cut(s) 285, 362
Sau96I GGNCC 4 cut(s) 15, 190, 209, 334
SetI ASST 5 cut(s) 140, 187, 336, 387, 396
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 2 cut(s) 190, 334
SmiMI CAYNNNNRTG 1 cut(s) 217
SphI GCATGC 1 cut(s) 357
Sse9I AATT 3 cut(s) 62, 174, 273
SseBI AGGCCT 1 cut(s) 309
SspMI CTAG 3 cut(s) 56, 305, 338
StuI AGGCCT 1 cut(s) 309
StyI CCWWGG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 194
TasI AATT 3 cut(s) 62, 174, 273
TfiI GAWTC 2 cut(s) 25, 41
Tru1I TTAA 2 cut(s) 285, 362
Tru9I TTAA 2 cut(s) 285, 362
TscAI CASTG 1 cut(s) 171
TseFI GTSAC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 17, 171, 186
TspGWI ACGGA 1 cut(s) 18
TspRI CASTG 1 cut(s) 171
VpaK11BI GGWCC 2 cut(s) 190, 334
XapI RAATTY 1 cut(s) 62
XceI RCATGY 1 cut(s) 357
XspI CTAG 3 cut(s) 56, 305, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.