FvH4_4g10920

Leucine rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017559
Physical Location & Seq
Reverse (-)
14595539 .. 14596759
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10920.t1

Sequence Viewer

Length: 1221 bp
ATGGGCAAGTTAATGTCTCTGTTTTGTCTGGTGTATTTCACATTATGTTCCACTCCATTGTTTACTAGTTCGCTAACACTGGAATCCGATATTCAAGTTCTTCGTGTGGTGAAGCGTAGCATAGATCCCAACGCCATCCCCCCAAATTCCTATCTCAGTAGCTGGGACTTCAAACTCGATCCATGCGAAACTACAGGCGGACAGTTCCTCGGAATCTTATGCAGTTTCCCTCTAGACAAATCCCCAAGCAGAATAACTGCCATTGATCTTGATGGTGCAGGCTATCAGGGTTTCCTAACATCAGCAGTTGGTAACCTAACCGAGCTCACCTTCATCAACCTCAGAAAAAACAACTTTCGAGGACCAATACCCAGGTCCATTTCCAATCTAAAGAAGCTCACTAGACTCTCACTGTCCAACAATTTCTTCACCGGCACCATTCCCTTGGGATTGAACACACTCAAGAAGCTAGAGTCTCTAGACATTTCGTTCAATGAGCTCTCTGGAACAATTCATCCCAGCATAGGTGGACTCCGAGGCTTGACATTCTTAAGCTTGTCCAACAATGGCTTCACTGGCAGAGTCCCAGACCTCTCGGGGTTATGGCAGCTCAAGACCTTAGATCTCAGCAGAAACCAGCTCCATGGAAATCTCCCAAATTTTCCAGTAAGCTTGAGAACACTGATTCTGAGCCAAAATCTGTTTTTAGGCCATCTTACACCTCTAAACAAACTCAGTAACCTCAGAGTGCTCGATGTGAGCGGCAACAGACTTTCAGGTGCCATCACTAGAGAATTTTTTACTTTACCCAAGGTCACTCAACTCAATCTCTCATATAACCACTTCACAAGATTGGAGGTAGTGAGATCTTTTGGACAAGAGGAGCTTCAGGTGCTCGATGCAAAAGGAAATCAACTGCGAGGCCATTTGCCTGTGAATTTGGTAACTCTGCAGAATCTAACAACAATCAACCTTTCCTACAACCAGTTTTTTGGTAAAATACCCGACGCATACGCATCAAGAGTTGGAGACTGGAGTGAACTATACTTGGATCACAACTTTTTGCTAGGAAAGCTTCCAGCGCAATTTGCCCAAGCAGCGCAGAGAATCCGGGGCAGTCTTTCATTCAACTGCCTGCGGTGTCCGGACAATGTTCCATTGTGCGAAGGCGGCCAAAGGAAAGTAGAAGAGTGTATTGGACGGCCAACCACCAGTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

407

Amino Acids

44.91

Weight (kDa)

9.28

Isoelectric Point (pI)

28.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_4 PF12799 131 - 167 1e-05 Leucine Rich repeats (2 copies)
LRR_8 PF13855 133 - 190 4.9e-06 Leucine rich repeat
LRR_4 PF12799 181 - 214 3.4e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 224 - 282 5.1e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017559)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59510
fragaria_vesca FvH4_4g10920
prunus_persica Prupe.1G197000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0406451
rosa_laevigata RLG00000008770
rosa_multiflora Rmu_ssc0000186.1_g000018
rosa_roxburghii Rroxscaffold_5G00351330
rosa_rugosa Rorug04G0071400
rosa_samantha Rh4BG135600 Rh4CG146000 Rh4DG133100
rosa_wichuraiana Rw4G011290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 434, 779
AccBSI CCGCTC 1 cut(s) 762
AccIII TCCGGA 1 cut(s) 1144
AciI CCGC 4 cut(s) 198, 762, 1138, 1170
AclWI GGATC 3 cut(s) 119, 173, 1059
AcoI YGGCCR 2 cut(s) 1171, 1202
AcsI RAATTY 4 cut(s) 145, 658, 794, 937
AcuI CTGAAG 1 cut(s) 872
AfiI CCNNNNNNNGG 2 cut(s) 524, 1215
AflII CTTAAG 1 cut(s) 550
AgsI TTSAA 5 cut(s) 95, 172, 454, 493, 1129
AhlI ACTAGT 1 cut(s) 65
AjnI CCWGG 1 cut(s) 371
AjuI GAANNNNNNNTTGG 6 cut(s) 410, 442, 554, 586, 1179, 1211
AloI GAACNNNNNNTCC 2 cut(s) 499, 531
Alw21I GWGCWC 4 cut(s) 327, 501, 753, 897
Alw26I GTCTC 3 cut(s) 21, 480, 1023
AlwI GGATC 3 cut(s) 119, 173, 1059
AlwNI CAGNNNCTG 1 cut(s) 162
Ama87I CYCGRG 1 cut(s) 595
Aor13HI TCCGGA 1 cut(s) 1144
AoxI GGCC 4 cut(s) 709, 922, 1171, 1202
ApeKI GCWGC 2 cut(s) 607, 1097
ApoI RAATTY 4 cut(s) 145, 658, 794, 937
AspLEI GCGC 2 cut(s) 1084, 1102
AspS9I GGNCC 2 cut(s) 362, 375
AsuC2I CCSGG 1 cut(s) 1112
AsuHPI GGTGA 3 cut(s) 121, 319, 421
AvaI CYCGRG 1 cut(s) 595
AvaII GGWCC 2 cut(s) 362, 375
BanI GGYRCC 2 cut(s) 434, 779
BanII GRGCYC 2 cut(s) 327, 501
Bbv12I GWGCWC 4 cut(s) 327, 501, 753, 897
BbvI GCAGC 2 cut(s) 619, 1109
BccI CCATC 4 cut(s) 143, 266, 720, 791
BceAI ACGGC 1 cut(s) 1217
BciT130I CCWGG 1 cut(s) 373
BcnI CCSGG 1 cut(s) 1112
BcoDI GTCTC 3 cut(s) 21, 480, 1023
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 7 cut(s) 66, 233, 402, 470, 479, 789, 1067
BfmI CTRYAG 2 cut(s) 192, 950
BfrI CTTAAG 1 cut(s) 550
BglII AGATCT 2 cut(s) 622, 866
BisI GCNGC 4 cut(s) 608, 763, 1098, 1171
BlsI GCNGC 4 cut(s) 609, 764, 1099, 1172
Bme1390I CCNGG 2 cut(s) 373, 1112
Bme18I GGWCC 2 cut(s) 362, 375
BmeT110I CYCGRG 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 362, 375
BmiI GGNNCC 2 cut(s) 436, 781
BmrFI CCNGG 2 cut(s) 373, 1112
BmsI GCATC 2 cut(s) 889, 1025
BpmI CTGGAG 1 cut(s) 1054
BpuEI CTTGAG 3 cut(s) 446, 596, 694
BpuMI CCSGG 1 cut(s) 1112
BsaJI CCNNGG 7 cut(s) 208, 371, 444, 535, 643, 810, 1111
BsaWI WCCGGW 1 cut(s) 1144
Bsc4I CCNNNNNNNGG 2 cut(s) 524, 1215
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 6 cut(s) 84, 580, 665, 985, 1037, 1212
BseAI TCCGGA 1 cut(s) 1144
BseBI CCWGG 1 cut(s) 373
BseDI CCNNGG 7 cut(s) 208, 371, 444, 535, 643, 810, 1111
BseGI GGATG 2 cut(s) 135, 514
BseLI CCNNNNNNNGG 2 cut(s) 524, 1215
BseMII CTCAG 6 cut(s) 169, 355, 640, 680, 748, 757
BseNI ACTGG 6 cut(s) 84, 580, 665, 985, 1037, 1212
BseRI GAGGAG 1 cut(s) 896
BseXI GCAGC 2 cut(s) 619, 1109
BseYI CCCAGC 2 cut(s) 162, 518
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 4 cut(s) 711, 924, 1173, 1204
BshNI GGYRCC 2 cut(s) 434, 779
BsiHKAI GWGCWC 4 cut(s) 327, 501, 753, 897
BsiHKCI CYCGRG 1 cut(s) 595
BsiSI CCGG 3 cut(s) 432, 1111, 1145
BslFI GGGAC 2 cut(s) 179, 569
BslI CCNNNNNNNGG 2 cut(s) 524, 1215
BsmAI GTCTC 3 cut(s) 21, 480, 1023
BsmFI GGGAC 2 cut(s) 179, 569
BsnI GGCC 4 cut(s) 711, 924, 1173, 1204
BsoBI CYCGRG 1 cut(s) 595
Bsp1286I GDGCHC 4 cut(s) 327, 501, 753, 897
Bsp13I TCCGGA 1 cut(s) 1144
Bsp143I GATC 6 cut(s) 124, 178, 265, 622, 866, 1051
Bsp19I CCATGG 1 cut(s) 643
BspACI CCGC 4 cut(s) 198, 762, 1138, 1170
BspANI GGCC 4 cut(s) 711, 924, 1173, 1204
BspCNI CTCAG 6 cut(s) 168, 354, 639, 681, 747, 756
BspEI TCCGGA 1 cut(s) 1144
BspLI GGNNCC 2 cut(s) 436, 781
BspMAI CTGCAG 1 cut(s) 954
BspPI GGATC 3 cut(s) 119, 173, 1059
BspT107I GGYRCC 2 cut(s) 434, 779
BspTI CTTAAG 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 6 cut(s) 84, 580, 665, 985, 1037, 1212
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 7 cut(s) 208, 371, 444, 535, 643, 810, 1111
BssMI GATC 6 cut(s) 124, 178, 265, 622, 866, 1051
BssT1I CCWWGG 3 cut(s) 444, 643, 810
Bst2UI CCWGG 1 cut(s) 373
Bst4CI ACNGT 2 cut(s) 204, 414
Bst6I CTCTTC 1 cut(s) 1182
BstAFI CTTAAG 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 280, 1136
BstDEI CTNAG 7 cut(s) 155, 341, 619, 626, 689, 734, 743
BstDSI CCRYGG 1 cut(s) 643
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 2 cut(s) 135, 514
BstHHI GCGC 2 cut(s) 1084, 1102
BstKTI GATC 6 cut(s) 127, 181, 268, 625, 869, 1054
BstMAI GTCTC 3 cut(s) 21, 480, 1023
BstMBI GATC 6 cut(s) 124, 178, 265, 622, 866, 1051
BstMWI GCNNNNNNNGC 7 cut(s) 576, 892, 1072, 1081, 1088, 1097, 1170
BstNI CCWGG 1 cut(s) 373
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 371, 1110
BstSFI CTRYAG 2 cut(s) 192, 950
BstV1I GCAGC 2 cut(s) 619, 1109
BstX2I RGATCY 3 cut(s) 124, 622, 866
BstXI CCANNNNNNTGG 3 cut(s) 445, 644, 992
BstYI RGATCY 3 cut(s) 124, 622, 866
BsuRI GGCC 4 cut(s) 711, 924, 1173, 1204
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 2 cut(s) 135, 514
BtsIMutI CAGTG 5 cut(s) 77, 410, 573, 680, 1219
Cac8I GCNNGC 2 cut(s) 280, 1136
CaiI CAGNNNCTG 1 cut(s) 162
CfoI GCGC 2 cut(s) 1084, 1102
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 2 cut(s) 362, 375
CseI GACGC 1 cut(s) 1016
CviAII CATG 2 cut(s) 183, 644
DdeI CTNAG 7 cut(s) 155, 341, 619, 626, 689, 734, 743
DpnI GATC 6 cut(s) 126, 180, 267, 624, 868, 1053
DpnII GATC 6 cut(s) 124, 178, 265, 622, 866, 1051
EaeI YGGCCR 2 cut(s) 1171, 1202
Eam1104I CTCTTC 1 cut(s) 1182
EarI CTCTTC 1 cut(s) 1182
EciI GGCGGA 1 cut(s) 213
Ecl136II GAGCTC 2 cut(s) 325, 499
Eco130I CCWWGG 3 cut(s) 444, 643, 810
Eco24I GRGCYC 2 cut(s) 327, 501
Eco47I GGWCC 2 cut(s) 362, 375
Eco53kI GAGCTC 2 cut(s) 325, 499
Eco57I CTGAAG 1 cut(s) 872
Eco88I CYCGRG 1 cut(s) 595
Eco91I GGTNACC 1 cut(s) 311
EcoICRI GAGCTC 2 cut(s) 325, 499
EcoO65I GGTNACC 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 371
EcoT14I CCWWGG 3 cut(s) 444, 643, 810
EcoT38I GRGCYC 2 cut(s) 327, 501
ErhI CCWWGG 3 cut(s) 444, 643, 810
FaeI CATG 2 cut(s) 186, 647
FalI AAGNNNNNCTT 2 cut(s) 870, 902
FaqI GGGAC 2 cut(s) 179, 569
FatI CATG 2 cut(s) 182, 643
Fnu4HI GCNGC 4 cut(s) 608, 763, 1098, 1171
FokI GGATG 2 cut(s) 122, 501
FriOI GRGCYC 2 cut(s) 327, 501
Fsp4HI GCNGC 4 cut(s) 608, 763, 1098, 1171
FspBI CTAG 7 cut(s) 66, 233, 402, 470, 479, 789, 1067
GlaI GCGC 2 cut(s) 1083, 1101
GluI GCNGC 4 cut(s) 608, 763, 1098, 1171
GsaI CCCAGC 2 cut(s) 166, 522
GsuI CTGGAG 1 cut(s) 1054
HaeIII GGCC 4 cut(s) 711, 924, 1173, 1204
HapII CCGG 3 cut(s) 432, 1111, 1145
HgaI GACGC 1 cut(s) 1016
HhaI GCGC 2 cut(s) 1084, 1102
Hin1II CATG 2 cut(s) 186, 647
Hin6I GCGC 2 cut(s) 1082, 1100
HinP1I GCGC 2 cut(s) 1082, 1100
HindIII AAGCTT 3 cut(s) 553, 670, 1073
HinfI GANTC 9 cut(s) 83, 213, 405, 473, 531, 582, 685, 955, 1107
HpaII CCGG 3 cut(s) 432, 1111, 1145
HphI GGTGA 3 cut(s) 121, 319, 421
Hpy166II GTNNAC 3 cut(s) 63, 530, 1040
Hpy188I TCNGA 6 cut(s) 88, 212, 344, 536, 690, 746
Hpy188III TCNNGA 8 cut(s) 233, 269, 463, 479, 504, 613, 1020, 1145
Hpy8I GTNNAC 3 cut(s) 63, 530, 1040
Hpy99I CGWCG 1 cut(s) 1010
HpyAV CCTTC 2 cut(s) 340, 1160
HpyCH4III ACNGT 2 cut(s) 204, 414
HpyCH4V TGCA 4 cut(s) 222, 278, 902, 952
HpyF10VI GCNNNNNNNGC 7 cut(s) 576, 892, 1072, 1081, 1088, 1097, 1170
HpyF3I CTNAG 7 cut(s) 155, 341, 619, 626, 689, 734, 743
Hsp92II CATG 2 cut(s) 186, 647
HspAI GCGC 2 cut(s) 1082, 1100
Kpn2I TCCGGA 1 cut(s) 1144
Kzo9I GATC 6 cut(s) 124, 178, 265, 622, 866, 1051
LmnI GCTCC 2 cut(s) 645, 883
Lsp1109I GCAGC 2 cut(s) 619, 1109
LweI GCATC 2 cut(s) 889, 1025
MaeI CTAG 7 cut(s) 66, 233, 402, 470, 479, 789, 1067
MaeIII GTNAC 4 cut(s) 311, 737, 814, 943
MalI GATC 6 cut(s) 126, 180, 267, 624, 868, 1053
MbiI CCGCTC 1 cut(s) 762
MboI GATC 6 cut(s) 124, 178, 265, 622, 866, 1051
MboII GAAGA 3 cut(s) 92, 418, 1199
MflI RGATCY 3 cut(s) 124, 622, 866
MhlI GDGCHC 4 cut(s) 327, 501, 753, 897
MluCI AATT 7 cut(s) 145, 421, 510, 658, 794, 937, 1085
MlyI GAGTC 4 cut(s) 399, 482, 525, 591
MmeI TCCRAC 3 cut(s) 441, 585, 1006
MroI TCCGGA 1 cut(s) 1144
MseI TTAA 2 cut(s) 11, 551
MspCI CTTAAG 1 cut(s) 550
MspI CCGG 3 cut(s) 432, 1111, 1145
MspR9I CCNGG 2 cut(s) 373, 1112
MvaI CCWGG 1 cut(s) 373
MwoI GCNNNNNNNGC 7 cut(s) 576, 892, 1072, 1081, 1088, 1097, 1170
NciI CCSGG 1 cut(s) 1112
NcoI CCATGG 1 cut(s) 643
NdeII GATC 6 cut(s) 124, 178, 265, 622, 866, 1051
NlaIII CATG 2 cut(s) 186, 647
NlaIV GGNNCC 2 cut(s) 436, 781
NmuCI GTSAC 1 cut(s) 814
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 5 cut(s) 83, 213, 685, 955, 1107
PkrI GCNGC 4 cut(s) 609, 764, 1099, 1172
PleI GAGTC 4 cut(s) 399, 481, 525, 590
PpsI GAGTC 4 cut(s) 399, 481, 525, 590
Psp124BI GAGCTC 2 cut(s) 327, 501
Psp6I CCWGG 1 cut(s) 371
PspEI GGTNACC 1 cut(s) 311
PspFI CCCAGC 2 cut(s) 162, 518
PspGI CCWGG 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 436, 781
PspPI GGNCC 2 cut(s) 362, 375
PstI CTGCAG 1 cut(s) 954
PstNI CAGNNNCTG 1 cut(s) 162
PsuI RGATCY 3 cut(s) 124, 622, 866
SacI GAGCTC 2 cut(s) 327, 501
SaqAI TTAA 2 cut(s) 11, 551
SatI GCNGC 4 cut(s) 608, 763, 1098, 1171
Sau3AI GATC 6 cut(s) 124, 178, 265, 622, 866, 1051
Sau96I GGNCC 2 cut(s) 362, 375
SchI GAGTC 4 cut(s) 399, 482, 525, 591
ScrFI CCNGG 2 cut(s) 373, 1112
SduI GDGCHC 4 cut(s) 327, 501, 753, 897
SfaNI GCATC 2 cut(s) 889, 1025
SfcI CTRYAG 2 cut(s) 192, 950
SinI GGWCC 2 cut(s) 362, 375
SmlI CTYRAG 4 cut(s) 461, 550, 611, 673
SmoI CTYRAG 4 cut(s) 461, 550, 611, 673
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 7 cut(s) 145, 421, 510, 658, 794, 937, 1085
SsiI CCGC 4 cut(s) 198, 762, 1138, 1170
SspMI CTAG 7 cut(s) 66, 233, 402, 470, 479, 789, 1067
SstI GAGCTC 2 cut(s) 327, 501
StyD4I CCNGG 2 cut(s) 371, 1110
StyI CCWWGG 3 cut(s) 444, 643, 810
TaaI ACNGT 2 cut(s) 204, 414
TaqI TCGA 4 cut(s) 177, 358, 753, 897
TasI AATT 7 cut(s) 145, 421, 510, 658, 794, 937, 1085
TauI GCSGC 2 cut(s) 765, 1173
TfiI GAWTC 5 cut(s) 83, 213, 685, 955, 1107
Tru1I TTAA 2 cut(s) 11, 551
Tru9I TTAA 2 cut(s) 11, 551
TscAI CASTG 5 cut(s) 84, 417, 580, 687, 1219
TseFI GTSAC 1 cut(s) 814
TseI GCWGC 2 cut(s) 607, 1097
Tsp45I GTSAC 1 cut(s) 814
TspDTI ATGAA 3 cut(s) 322, 503, 1113
TspRI CASTG 5 cut(s) 84, 417, 580, 687, 1219
Vha464I CTTAAG 1 cut(s) 550
VpaK11BI GGWCC 2 cut(s) 362, 375
XapI RAATTY 4 cut(s) 145, 658, 794, 937
XbaI TCTAGA 2 cut(s) 232, 478
XspI CTAG 7 cut(s) 66, 233, 402, 470, 479, 789, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.