Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0027915

Physical Location & Seq

Genomic Coordinates Reverse (-)

17168783 .. 17172652

Gene Structure 3870 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13601.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGACCGACGACGACTCCAGCATATCAATCTTCGGCCGCACCTCTCAAACCTATAACTCGCCGATCCGAAGCAAAATGAAGATGAAGATCAACAAGGCCTGCGATCTCCGCTCCATCTTCGTCCTTCCTCCTCACTCAAGTCGATCTATGGTGGTGGAGGATCCGTGGAACGGGATTTCCGATATGGTGGTGAAGGAAGCGCCGGTTGCTGCGGAGAAGTCGAAGTTCGACGAATTGATCGAATCAGTGGTGGAGTCTAAGGGAAAGAATAGGATTGCGAAACAAATTTATGTTTTTAGATCTTCGTCGTCGCCGTCGTCGTCTTCGATCTGGAAGGGTGAGAGCGACTCAGGCGAAAATGCCATAAAGGAGAAAGAGGAGGAGCTGGAGGAATTCAAGAGAGAGATTGGAGATCTGAAAATGGAGGTTGTGAGGGAGCATTTATGGAACAAGATGATCACAATGTGGATTGATGGAGGTCTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007049 GO:0007275 GO:0008150 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048236 GO:0048856 GO:0048869 GO:0051321 GO:0051704 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.37

Weight (kDa)

5.55

Isoelectric Point (pI)

77.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0027915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g13601 FvH4_6g28482

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AciI	CCGC	3 cut(s)	37, 109, 212
AclWI	GGATC	3 cut(s)	58, 155, 168
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	2 cut(s)	285, 392
AdeI	CACNNNGTG	1 cut(s)	465
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	397
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	1 cut(s)	385
AluI	AGCT	1 cut(s)	385
AlwI	GGATC	3 cut(s)	58, 155, 168
AoxI	GGCC	2 cut(s)	34, 96
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	2 cut(s)	285, 392
AspLEI	GCGC	1 cut(s)	202
AsuHPI	GGTGA	2 cut(s)	202, 350
BamHI	GGATCC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	2 cut(s)	122, 467
BceAI	ACGGC	1 cut(s)	298
BclI	TGATCA	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	203
BglII	AGATCT	2 cut(s)	299, 412
BisI	GCNGC	2 cut(s)	37, 210
BlsI	GCNGC	2 cut(s)	38, 211
BmiI	GGNNCC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	1 cut(s)	407
BpuEI	CTTGAG	1 cut(s)	121
BsaBI	GATNNNNATC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	164
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	164
BseJI	GATNNNNATC	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	363
BseRI	GAGGAG	3 cut(s)	120, 392, 395
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	196
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	2 cut(s)	36, 98
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	170
BsnI	GGCC	2 cut(s)	36, 98
BspACI	CCGC	3 cut(s)	37, 109, 212
BspANI	GGCC	2 cut(s)	36, 98
BspCNI	CTCAG	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	3 cut(s)	58, 155, 168
BsrBI	CCGCTC	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	258, 349
BstDSI	CCRYGG	1 cut(s)	164
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 206, 351
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	3 cut(s)	160, 299, 412
BstYI	RGATCY	3 cut(s)	160, 299, 412
BstZI	CGGCCG	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	36, 98
BtgI	CCRYGG	1 cut(s)	164
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	202
CviJI	RGCY	3 cut(s)	36, 98, 385
CviKI_1	RGCY	3 cut(s)	36, 98, 385
DdeI	CTNAG	2 cut(s)	258, 349
DraIII	CACNNNGTG	1 cut(s)	465
EaeI	YGGCCR	1 cut(s)	34
EagI	CGGCCG	1 cut(s)	34
EclXI	CGGCCG	1 cut(s)	34
Eco147I	AGGCCT	1 cut(s)	98
Eco52I	CGGCCG	1 cut(s)	34
EcoRI	GAATTC	1 cut(s)	392
FaiI	YATR	7 cut(s)	23, 54, 149, 185, 291, 365, 445
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	2 cut(s)	37, 210
Fsp4HI	GCNGC	2 cut(s)	37, 210
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	2 cut(s)	37, 210
GsuI	CTGGAG	1 cut(s)	407
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	36, 98
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HinfI	GANTC	4 cut(s)	14, 242, 254, 347
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	2 cut(s)	202, 350
Hpy188I	TCNGA	3 cut(s)	68, 181, 417
Hpy188III	TCNNGA	2 cut(s)	331, 397
Hpy99I	CGWCG	7 cut(s)	11, 14, 233, 310, 313, 319, 322
HpyAV	CCTTC	3 cut(s)	134, 187, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 206, 351
HpyF3I	CTNAG	2 cut(s)	258, 349
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	456
LmnI	GCTCC	3 cut(s)	116, 382, 436
LpnPI	CCDG	6 cut(s)	31, 112, 216, 316, 336, 371
Lsp1109I	GCAGC	1 cut(s)	196
MbiI	CCGCTC	1 cut(s)	111
MboII	GAAGA	6 cut(s)	22, 91, 97, 109, 294, 315
MflI	RGATCY	3 cut(s)	160, 299, 412
MluCI	AATT	3 cut(s)	233, 285, 392
MlyI	GAGTC	3 cut(s)	8, 263, 341
MspI	CCGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	108, 206, 351
NlaIV	GGNNCC	1 cut(s)	162
PceI	AGGCCT	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	6 cut(s)	177, 237, 311, 314, 317, 323
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	38, 211
PleI	GAGTC	3 cut(s)	8, 262, 341
PpsI	GAGTC	3 cut(s)	8, 262, 341
PspN4I	GGNNCC	1 cut(s)	162
PsuI	RGATCY	3 cut(s)	160, 299, 412
SatI	GCNGC	2 cut(s)	37, 210
SchI	GAGTC	3 cut(s)	8, 263, 341
SetI	ASST	5 cut(s)	44, 53, 387, 429, 481
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	3 cut(s)	233, 285, 392
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	3 cut(s)	37, 109, 212
StuI	AGGCCT	1 cut(s)	98
TaqI	TCGA	5 cut(s)	142, 221, 228, 240, 326
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	233, 285, 392
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	1 cut(s)	242
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	2 cut(s)	92, 98
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	252
XapI	RAATTY	2 cut(s)	285, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.