FvH4_6g28482
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0027915
Physical Location & Seq
Reverse (-)
21949031 .. 21949625
595 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28482.t1

Sequence Viewer

Length: 312 bp
ATGAACGACGACGACTCCAACATATCAATCTTCGACCGTACCTCTCAAACCTATAACTCGCCGATCCGAAGCAAAATGAAGATGAAGATCAACAAGGCCTGCGATCTCCGCTCCATCTTCGTCCTTCCTCCTCACTCAAGTCGATCTGTGGTGGTGGAGGATCTGTGGAACGGGATTTCCGATATGGTGGTGAAGGAAGCGCCGGTTGCTGCGGAGAAGTCGAACTTCAACGAATTGATCGAATCAGTGGTGGAGTCTAAGGGAAAGAATAGGATTGCGAAACAAATTTATGTTTTTGCACTTTGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain Myb_DNA-binding

Protein Analysis

104

Amino Acids

11.61

Weight (kDa)

7.69

Isoelectric Point (pI)

72.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0027915)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g13601 FvH4_6g28482

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 111
AciI CCGC 2 cut(s) 109, 212
AclWI GGATC 2 cut(s) 58, 168
AcsI RAATTY 1 cut(s) 285
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 1 cut(s) 229
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AlwI GGATC 2 cut(s) 58, 168
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 285
AspLEI GCGC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 202
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 122
BfaI CTAG 1 cut(s) 310
BfoI RGCGCY 1 cut(s) 203
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 121
BsaBI GATNNNNATC 1 cut(s) 86
BsaXI ACNNNNNCTCC 3 cut(s) 29, 149, 179
Bse118I RCCGGY 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 86
BseJI GATNNNNATC 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 1 cut(s) 196
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 203
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 6 cut(s) 63, 87, 103, 143, 160, 237
BspACI CCGC 2 cut(s) 109, 212
BspANI GGCC 1 cut(s) 98
BspPI GGATC 2 cut(s) 58, 168
BsrBI CCGCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 202
BssMI GATC 6 cut(s) 63, 87, 103, 143, 160, 237
Bst4CI ACNGT 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 6 cut(s) 66, 90, 106, 146, 163, 240
BstMBI GATC 6 cut(s) 63, 87, 103, 143, 160, 237
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 108, 206
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BsuRI GGCC 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 252
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 1 cut(s) 202
Cfr10I RCCGGY 1 cut(s) 202
Csp6I GTAC 1 cut(s) 39
CviJI RGCY 1 cut(s) 98
CviKI_1 RGCY 1 cut(s) 98
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 258
DpnI GATC 6 cut(s) 65, 89, 105, 145, 162, 239
DpnII GATC 6 cut(s) 63, 87, 103, 143, 160, 237
Eco147I AGGCCT 1 cut(s) 98
FaiI YATR 4 cut(s) 23, 54, 185, 291
FalI AAGNNNNNCTT 2 cut(s) 209, 241
Fnu4HI GCNGC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 310
GlaI GCGC 1 cut(s) 201
GluI GCNGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 203
HhaI GCGC 1 cut(s) 202
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 3 cut(s) 14, 242, 254
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 68, 181
Hpy99I CGWCG 2 cut(s) 11, 14
HpyAV CCTTC 2 cut(s) 134, 187
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 206
HpyF3I CTNAG 1 cut(s) 258
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 6 cut(s) 63, 87, 103, 143, 160, 237
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 2 cut(s) 112, 216
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 310
MalI GATC 6 cut(s) 65, 89, 105, 145, 162, 239
MbiI CCGCTC 1 cut(s) 111
MboI GATC 6 cut(s) 63, 87, 103, 143, 160, 237
MboII GAAGA 4 cut(s) 22, 91, 97, 109
MflI RGATCY 1 cut(s) 160
MluCI AATT 2 cut(s) 233, 285
MlyI GAGTC 2 cut(s) 8, 263
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 4 cut(s) 52, 138, 141, 151
MspI CCGG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 108, 206
NdeII GATC 6 cut(s) 63, 87, 103, 143, 160, 237
PceI AGGCCT 1 cut(s) 98
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 237
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 2 cut(s) 8, 262
PpsI GAGTC 2 cut(s) 8, 262
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 6 cut(s) 63, 87, 103, 143, 160, 237
SchI GAGTC 2 cut(s) 8, 263
SetI ASST 2 cut(s) 44, 53
SgeI CNNG 6 cut(s) 70, 106, 111, 150, 184, 215
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 2 cut(s) 233, 285
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 2 cut(s) 109, 212
SspMI CTAG 1 cut(s) 310
StuI AGGCCT 1 cut(s) 98
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 4 cut(s) 33, 142, 221, 240
TasI AATT 2 cut(s) 233, 285
TfiI GAWTC 1 cut(s) 242
TscAI CASTG 1 cut(s) 252
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 17, 92, 98
TspRI CASTG 1 cut(s) 252
XapI RAATTY 1 cut(s) 285
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.