FvH4_4g28380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017290
Physical Location & Seq
Forward (+)
29057369 .. 29058103
735 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28380.t1

Sequence Viewer

Length: 189 bp
ATGGCATCACTCAAGGCTGAGAAACCTGTAGTACAACTGAAGAAAGAGCCTGCAGCTCCAAAAGCCAGTGGTACTACGCCCAAAGCATGCGCTCCGGCCTCCAAAGCCGCCCCTAAGAAGGCTGAGACTAAGCCTAAGGAGCCTAGGAAGAGGACAACTGGAAGCAAACCGGCTGCAGCCAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.38

Weight (kDa)

10.4

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017290)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28380
malus_domestica MD13G1049500.v1.1 MD16G1050500.v1.1
prunus_persica Prupe.1G302400_v2.0.a1
pyrus_communis pycom13g04370
rosa_chinensis RchiOBHm_Chr4g0436301
rosa_roxburghii Rroxscaffold_5G00377490
rosa_rugosa Rorug04G0293100
rosa_samantha Rh4AG347100 Rh4BG356000 Rh4CG370600 Rh4DG349700
rosa_wichuraiana Rw4G030340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 59
AfaI GTAC 2 cut(s) 33, 73
AfiI CCNNNNNNNGG 1 cut(s) 118
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 3 cut(s) 53, 173, 176
AspA2I CCTAGG 1 cut(s) 143
AspLEI GCGC 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 135
BbvI GCAGC 2 cut(s) 65, 160
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 3 cut(s) 27, 51, 174
BisI GCNGC 4 cut(s) 54, 108, 174, 177
BlnI CCTAGG 1 cut(s) 143
BlsI GCNGC 4 cut(s) 55, 109, 175, 178
BmiI GGNNCC 1 cut(s) 141
BmsI GCATC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 66, 163
Bse21I CCTNAGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 9, 114
BseNI ACTGG 2 cut(s) 66, 163
BseXI GCAGC 2 cut(s) 65, 160
BshFI GGCC 1 cut(s) 98
BsiSI CCGG 2 cut(s) 95, 170
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 1 cut(s) 98
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 2 cut(s) 10, 115
BspLI GGNNCC 1 cut(s) 141
BspMAI CTGCAG 2 cut(s) 55, 178
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 2 cut(s) 66, 163
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 51, 88
BstDEI CTNAG 5 cut(s) 18, 114, 123, 129, 135
BstHHI GCGC 1 cut(s) 92
BstMAI GTCTC 1 cut(s) 119
BstMWI GCNNNNNNNGC 3 cut(s) 62, 104, 139
BstNSI RCATGY 1 cut(s) 90
BstSFI CTRYAG 3 cut(s) 27, 51, 174
BstV1I GCAGC 2 cut(s) 65, 160
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 98
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 51, 88
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 169
Csp6I GTAC 2 cut(s) 32, 72
CviAII CATG 1 cut(s) 87
CviQI GTAC 2 cut(s) 32, 72
DdeI CTNAG 5 cut(s) 18, 114, 123, 129, 135
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 1 cut(s) 90
FaiI YATR 1 cut(s) 88
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 4 cut(s) 54, 108, 174, 177
Fsp4HI GCNGC 4 cut(s) 54, 108, 174, 177
FspBI CTAG 1 cut(s) 144
GlaI GCGC 1 cut(s) 91
GluI GCNGC 4 cut(s) 54, 108, 174, 177
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 95, 170
HhaI GCGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 90
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HpaII CCGG 2 cut(s) 95, 170
HpyAV CCTTC 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 53, 176
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 104, 139
HpyF3I CTNAG 5 cut(s) 18, 114, 123, 129, 135
Hsp92II CATG 1 cut(s) 90
HspAI GCGC 1 cut(s) 90
LmnI GCTCC 3 cut(s) 61, 97, 139
LpnPI CCDG 6 cut(s) 39, 63, 79, 108, 144, 183
Lsp1109I GCAGC 2 cut(s) 65, 160
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 144
MboII GAAGA 2 cut(s) 52, 160
MluCI AATT 1 cut(s) 184
MnlI CCTC 2 cut(s) 109, 144
MseI TTAA 1 cut(s) 187
MspI CCGG 2 cut(s) 95, 170
MwoI GCNNNNNNNGC 3 cut(s) 62, 104, 139
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 1 cut(s) 141
NspI RCATGY 1 cut(s) 90
PaeI GCATGC 1 cut(s) 90
PkrI GCNGC 4 cut(s) 55, 109, 175, 178
PspN4I GGNNCC 1 cut(s) 141
PstI CTGCAG 2 cut(s) 55, 178
RsaI GTAC 2 cut(s) 33, 73
RsaNI GTAC 2 cut(s) 32, 72
SaqAI TTAA 1 cut(s) 187
SatI GCNGC 4 cut(s) 54, 108, 174, 177
SetI ASST 2 cut(s) 28, 58
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 3 cut(s) 27, 51, 174
SgeI CNNG 9 cut(s) 25, 38, 62, 78, 99, 107, 156, 171, 182
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
SphI GCATGC 1 cut(s) 90
Sse9I AATT 1 cut(s) 184
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 143
TasI AATT 1 cut(s) 184
TatI WGTACW 1 cut(s) 31
TauI GCSGC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 187
Tru9I TTAA 1 cut(s) 187
TscAI CASTG 1 cut(s) 73
TseI GCWGC 3 cut(s) 53, 173, 176
TspRI CASTG 1 cut(s) 73
XceI RCATGY 1 cut(s) 90
XmaJI CCTAGG 1 cut(s) 143
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.