Rorug04G0293100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017290
Physical Location & Seq
Reverse (-)
46712144 .. 46713355
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0293100.1

Sequence Viewer

Length: 1212 bp
ATGGTAGCTGACCTCATTAATCCACATACTAGGTCTTGGATTGCTCCAACTGTGTCTACACTATTTTCTCCTGAAATTGCTGCTCAAATACTAGCTATCCCTTTGAGTAGAAGAGGTATACCAGATAAGCTTCTTTGGGAGCCGGAAAAACAAGGTTTCTTCACCGTTAAGACTGCTTACTGGATTGCCAGAGAACATGTTCTCAGTAATGCTCTTGCTTCTACTTCACAGGGAGACCCTTTTAAAGAGCTATGGAAATGTCTTTGGAAAGCTAGGGTGCCTGCCAGAGTCCAAATATGTGCATGGAGGGCCTGCCAAAACATTCTACCCACCCGAGAGTGCTTACTTACCAAGGGTTATGTTGGTGAAATGAGTTGTTTACTGTGCTCTGCTCGTCTAGAAGACACATCTCATATCTTCTGTAAGTGTCCAACTGCAAGAGAAATTTTCTCTGCTCCTCCTTTTACCTTACAGTCTTTGGATATGCCAAACTTGATTTTTAAGGAATGGATGTTGGAAACTACTCTGGTCCTCAAACCGGAGACTTTTGACAAGCTGTTAATGTTAATTTGGTCTCTATGGAAAAACCGGAATGCTACACTGTGGGAAGGTAATCCAAAGTCAACATCAGTTCTATTATGTAGCTCCTTAGCCTGGTTGGATGATTTCCAAAAATCTAGAATGCCTTCTGCAGTACCAAAGCAAGTTGTAAAGCATCATTGGCAGCTGGATAAAGGTGGCAGAGTAAAAATAAATGTAGATGGTGCGTTCTTACCATCGCAGACGCAGGGAGGGGCTGGATGTATTGCTCGTGGTCCAGCTGGGCAATTCATGGCTGCATTTGCTCACCATCTACCTCATGTGAACTCCGCTAAGCAAGCAGAACTGCTTGCCATTCAAACTGGACTTGAGATGGCACTCCAGCTGCAGTTGTCCTCTGTCAGTATAGAAACTGATTGCCTTGCTGCTGTCCAGGAAATCATGCACCAGCCATATGATTATTTTGAATTGGCAGCCATTATTGCTGACATTCATGACCTGCAGAGGCAGTTCCAAGAGGCACAAATTAGTTTTGCCCCCAGAAATTGCAACCAAGTTGCGCATAGACTAGCTAGTATCGGTTTTGAATCGGGTCAAAATGAGTCTTGGCTTCACCAAGCTCCCAATTGCATTGTTGATGTACTCCAATATGATTGTAATCATCTAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

403

Amino Acids

45.25

Weight (kDa)

6.88

Isoelectric Point (pI)

49.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 54 - 149 8.9e-15 zinc-binding in reverse transcriptase
RVT_3 PF13456 252 - 372 2.5e-25 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017290)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28380
malus_domestica MD13G1049500.v1.1 MD16G1050500.v1.1
prunus_persica Prupe.1G302400_v2.0.a1
pyrus_communis pycom13g04370
rosa_chinensis RchiOBHm_Chr4g0436301
rosa_roxburghii Rroxscaffold_5G00377490
rosa_rugosa Rorug04G0293100
rosa_samantha Rh4AG347100 Rh4BG356000 Rh4CG370600 Rh4DG349700
rosa_wichuraiana Rw4G030340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1101
Acc36I ACCTGC 1 cut(s) 1047
AccB1I GGYRCC 1 cut(s) 277
AccI GTMKAC 2 cut(s) 56, 118
AciI CCGC 1 cut(s) 870
AcsI RAATTY 1 cut(s) 444
AfaI GTAC 2 cut(s) 696, 1182
AfiI CCNNNNNNNGG 2 cut(s) 538, 654
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 3 cut(s) 899, 1007, 1127
AjnI CCWGG 2 cut(s) 653, 972
Alw21I GWGCWC 1 cut(s) 389
Alw26I GTCTC 3 cut(s) 228, 536, 579
Ama87I CYCGRG 1 cut(s) 333
AoxI GGCC 1 cut(s) 309
ApeKI GCWGC 6 cut(s) 80, 724, 836, 925, 965, 1013
ApoI RAATTY 1 cut(s) 444
AseI ATTAAT 1 cut(s) 18
Asp700I GAANNNNTTC 2 cut(s) 198, 685
AspLEI GCGC 1 cut(s) 1102
AspS9I GGNCC 3 cut(s) 309, 529, 815
AsuHPI GGTGA 4 cut(s) 154, 377, 839, 1145
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 2 cut(s) 529, 815
BanI GGYRCC 1 cut(s) 277
BauI CACGAG 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 6 cut(s) 67, 736, 823, 912, 952, 1025
BccI CCATC 4 cut(s) 755, 784, 858, 907
BciT130I CCWGG 2 cut(s) 655, 974
BcoDI GTCTC 3 cut(s) 228, 536, 579
BfaI CTAG 8 cut(s) 30, 92, 273, 398, 678, 1109, 1113, 1210
BfmI CTRYAG 3 cut(s) 690, 926, 1040
BfuAI ACCTGC 1 cut(s) 1047
BisI GCNGC 6 cut(s) 81, 725, 837, 926, 966, 1014
BlpI GCTNAGC 1 cut(s) 873
BlsI GCNGC 6 cut(s) 82, 726, 838, 927, 967, 1015
Bme1390I CCNGG 2 cut(s) 655, 974
Bme18I GGWCC 2 cut(s) 529, 815
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 3 cut(s) 309, 529, 815
BmiI GGNNCC 2 cut(s) 141, 279
BmrFI CCNGG 2 cut(s) 655, 974
BmsI GCATC 1 cut(s) 724
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 905
Bpu10I CCTNAGC 1 cut(s) 649
Bpu1102I GCTNAGC 1 cut(s) 873
BpuEI CTTGAG 1 cut(s) 929
BsaBI GATNNNNATC 1 cut(s) 1197
BsaI GGTCTC 2 cut(s) 228, 579
BsaJI CCNNGG 1 cut(s) 351
BsaWI WCCGGW 2 cut(s) 538, 588
Bsc4I CCNNNNNNNGG 2 cut(s) 538, 654
Bse1I ACTGG 2 cut(s) 185, 907
Bse8I GATNNNNATC 1 cut(s) 1197
BseBI CCWGG 2 cut(s) 655, 974
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 3 cut(s) 516, 667, 806
BseJI GATNNNNATC 1 cut(s) 1197
BseLI CCNNNNNNNGG 2 cut(s) 538, 654
BseMII CTCAG 1 cut(s) 217
BseNI ACTGG 2 cut(s) 185, 907
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 6 cut(s) 67, 736, 823, 912, 952, 1025
BseYI CCCAGC 1 cut(s) 821
BshFI GGCC 1 cut(s) 311
BshNI GGYRCC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 3 cut(s) 143, 539, 589
BslI CCNNNNNNNGG 2 cut(s) 538, 654
BsmAI GTCTC 3 cut(s) 228, 536, 579
BsmI GAATGC 2 cut(s) 598, 687
BsnI GGCC 1 cut(s) 311
Bso31I GGTCTC 2 cut(s) 228, 579
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 389
Bsp1720I GCTNAGC 1 cut(s) 873
BspACI CCGC 1 cut(s) 870
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 1 cut(s) 216
BspHI TCATGA 1 cut(s) 1033
BspLI GGNNCC 2 cut(s) 141, 279
BspMAI CTGCAG 3 cut(s) 694, 930, 1044
BspMI ACCTGC 1 cut(s) 1047
BspT107I GGYRCC 1 cut(s) 277
BspTNI GGTCTC 2 cut(s) 228, 579
BsrI ACTGG 2 cut(s) 185, 907
BssECI CCNNGG 1 cut(s) 351
BssNAI GTATAC 1 cut(s) 119
BssSI CACGAG 1 cut(s) 810
BssT1I CCWWGG 1 cut(s) 351
Bst1107I GTATAC 1 cut(s) 119
Bst2BI CACGAG 1 cut(s) 810
Bst2UI CCWGG 2 cut(s) 655, 974
Bst4CI ACNGT 5 cut(s) 52, 166, 384, 474, 603
Bst6I CTCTTC 1 cut(s) 106
BstC8I GCNNGC 4 cut(s) 282, 313, 879, 891
BstDEI CTNAG 4 cut(s) 203, 649, 873, 1205
BstF5I GGATG 3 cut(s) 516, 667, 806
BstHHI GCGC 1 cut(s) 1102
BstMAI GTCTC 3 cut(s) 228, 536, 579
BstMWI GCNNNNNNNGC 5 cut(s) 308, 721, 842, 878, 1022
BstNI CCWGG 2 cut(s) 655, 974
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 653, 972
BstSFI CTRYAG 3 cut(s) 690, 926, 1040
BstV1I GCAGC 6 cut(s) 67, 736, 823, 912, 952, 1025
BstV2I GAAGAC 1 cut(s) 408
BstZ17I GTATAC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 311
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 3 cut(s) 516, 667, 806
BtsIMutI CAGTG 1 cut(s) 599
BveI ACCTGC 1 cut(s) 1047
Cac8I GCNNGC 4 cut(s) 282, 313, 879, 891
CciI TCATGA 1 cut(s) 1033
CfoI GCGC 1 cut(s) 1102
Cfr13I GGNCC 3 cut(s) 309, 529, 815
CseI GACGC 1 cut(s) 793
Csp6I GTAC 2 cut(s) 695, 1181
CviAII CATG 6 cut(s) 197, 303, 832, 860, 982, 1034
CviQI GTAC 2 cut(s) 695, 1181
DdeI CTNAG 4 cut(s) 203, 649, 873, 1205
DraI TTTAAA 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 106
EarI CTCTTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 351
Eco31I GGTCTC 2 cut(s) 228, 579
Eco47I GGWCC 2 cut(s) 529, 815
Eco88I CYCGRG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 653, 972
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 6 cut(s) 200, 306, 835, 863, 985, 1037
FatI CATG 6 cut(s) 196, 302, 831, 859, 981, 1033
FauNDI CATATG 1 cut(s) 994
FblI GTMKAC 2 cut(s) 56, 118
Fnu4HI GCNGC 6 cut(s) 81, 725, 837, 926, 966, 1014
FokI GGATG 3 cut(s) 523, 674, 813
Fsp4HI GCNGC 6 cut(s) 81, 725, 837, 926, 966, 1014
FspBI CTAG 8 cut(s) 30, 92, 273, 398, 678, 1109, 1113, 1210
FspI TGCGCA 1 cut(s) 1101
GlaI GCGC 1 cut(s) 1101
GluI GCNGC 6 cut(s) 81, 725, 837, 926, 966, 1014
GsaI CCCAGC 1 cut(s) 825
GsuI CTGGAG 1 cut(s) 905
HaeIII GGCC 1 cut(s) 311
HapII CCGG 3 cut(s) 143, 539, 589
HgaI GACGC 1 cut(s) 793
HhaI GCGC 1 cut(s) 1102
Hin1II CATG 6 cut(s) 200, 306, 835, 863, 985, 1037
Hin6I GCGC 1 cut(s) 1100
HinP1I GCGC 1 cut(s) 1100
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 3 cut(s) 288, 1127, 1142
HpaII CCGG 3 cut(s) 143, 539, 589
HphI GGTGA 4 cut(s) 154, 377, 839, 1145
Hpy166II GTNNAC 5 cut(s) 57, 119, 380, 624, 865
Hpy188III TCNNGA 4 cut(s) 71, 398, 678, 1034
Hpy8I GTNNAC 5 cut(s) 57, 119, 380, 624, 865
HpyAV CCTTC 2 cut(s) 602, 696
HpyCH4III ACNGT 5 cut(s) 52, 166, 384, 474, 603
HpyCH4V TGCA 9 cut(s) 302, 437, 692, 839, 928, 985, 1042, 1089, 1170
HpyF10VI GCNNNNNNNGC 5 cut(s) 308, 721, 842, 878, 1022
HpyF3I CTNAG 4 cut(s) 203, 649, 873, 1205
Hsp92II CATG 6 cut(s) 200, 306, 835, 863, 985, 1037
HspAI GCGC 1 cut(s) 1100
LmnI GCTCC 5 cut(s) 49, 139, 460, 650, 1165
Lsp1109I GCAGC 6 cut(s) 67, 736, 823, 912, 952, 1025
LweI GCATC 1 cut(s) 724
MaeI CTAG 8 cut(s) 30, 92, 273, 398, 678, 1109, 1113, 1210
MboII GAAGA 4 cut(s) 123, 151, 409, 413
MfeI CAATTG 1 cut(s) 1165
MhlI GDGCHC 1 cut(s) 389
MluCI AATT 8 cut(s) 75, 444, 567, 827, 1007, 1065, 1084, 1165
MlyI GAGTC 2 cut(s) 297, 1151
MmeI TCCRAC 4 cut(s) 71, 455, 495, 639
MroXI GAANNNNTTC 2 cut(s) 198, 685
MseI TTAA 6 cut(s) 18, 168, 243, 501, 560, 566
MspA1I CMGCKG 3 cut(s) 727, 821, 925
MspI CCGG 3 cut(s) 143, 539, 589
MspR9I CCNGG 2 cut(s) 655, 974
MunI CAATTG 1 cut(s) 1165
Mva1269I GAATGC 2 cut(s) 598, 687
MvaI CCWGG 2 cut(s) 655, 974
MwoI GCNNNNNNNGC 5 cut(s) 308, 721, 842, 878, 1022
NdeI CATATG 1 cut(s) 994
NlaIII CATG 6 cut(s) 200, 306, 835, 863, 985, 1037
NlaIV GGNNCC 2 cut(s) 141, 279
NsbI TGCGCA 1 cut(s) 1101
NspI RCATGY 1 cut(s) 200
PagI TCATGA 1 cut(s) 1033
PciI ACATGT 1 cut(s) 196
PctI GAATGC 2 cut(s) 598, 687
PdmI GAANNNNTTC 2 cut(s) 198, 685
PfeI GAWTC 1 cut(s) 1127
PfoI TCCNGGA 1 cut(s) 972
PkrI GCNGC 6 cut(s) 82, 726, 838, 927, 967, 1015
PleI GAGTC 2 cut(s) 296, 1150
PpsI GAGTC 2 cut(s) 296, 1150
PscI ACATGT 1 cut(s) 196
PshBI ATTAAT 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 653, 972
PspFI CCCAGC 1 cut(s) 821
PspGI CCWGG 2 cut(s) 653, 972
PspN4I GGNNCC 2 cut(s) 141, 279
PspPI GGNCC 3 cut(s) 309, 529, 815
PstI CTGCAG 3 cut(s) 694, 930, 1044
PvuII CAGCTG 3 cut(s) 727, 821, 925
RsaI GTAC 2 cut(s) 696, 1182
RsaNI GTAC 2 cut(s) 695, 1181
SaqAI TTAA 6 cut(s) 18, 168, 243, 501, 560, 566
SatI GCNGC 6 cut(s) 81, 725, 837, 926, 966, 1014
Sau96I GGNCC 3 cut(s) 309, 529, 815
SchI GAGTC 2 cut(s) 297, 1151
ScrFI CCNGG 2 cut(s) 655, 974
SduI GDGCHC 1 cut(s) 389
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 3 cut(s) 690, 926, 1040
SinI GGWCC 2 cut(s) 529, 815
SmlI CTYRAG 1 cut(s) 908
SmoI CTYRAG 1 cut(s) 908
Sse9I AATT 8 cut(s) 75, 444, 567, 827, 1007, 1065, 1084, 1165
SsiI CCGC 1 cut(s) 870
SspMI CTAG 8 cut(s) 30, 92, 273, 398, 678, 1109, 1113, 1210
StyD4I CCNGG 2 cut(s) 653, 972
StyI CCWWGG 1 cut(s) 351
TaaI ACNGT 5 cut(s) 52, 166, 384, 474, 603
TasI AATT 8 cut(s) 75, 444, 567, 827, 1007, 1065, 1084, 1165
TatI WGTACW 1 cut(s) 1180
TfiI GAWTC 1 cut(s) 1127
Tru1I TTAA 6 cut(s) 18, 168, 243, 501, 560, 566
Tru9I TTAA 6 cut(s) 18, 168, 243, 501, 560, 566
TscAI CASTG 1 cut(s) 606
TseI GCWGC 6 cut(s) 80, 724, 836, 925, 965, 1013
TspDTI ATGAA 2 cut(s) 820, 1022
TspRI CASTG 1 cut(s) 606
VpaK11BI GGWCC 2 cut(s) 529, 815
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 1 cut(s) 444
XbaI TCTAGA 2 cut(s) 397, 677
XceI RCATGY 1 cut(s) 200
XmiI GTMKAC 2 cut(s) 56, 118
XmnI GAANNNNTTC 2 cut(s) 198, 685
XspI CTAG 8 cut(s) 30, 92, 273, 398, 678, 1109, 1113, 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.