Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017301

Physical Location & Seq

Genomic Coordinates Forward (+)

3722050 .. 3726963

Gene Structure 4914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGACGTTGACTCGTGGGCCTCCAGAGTTCATGCTGCCAAGAGCCTCTCTGCTGTTCATGCTGCCAGGATGCACTATGATAATCATTTTGCGTTGGACGATTCTGAAGGAGACGATGAAGCAAAGTCTTGTTTTCCATGCCCTTTTTGTTATGTAGACATTGAGGTCCCAGTGCTCTGCAACCACTTGGAGGAAGAACACTGCTTTGAATTCAAAAATGCTGTTTGTCCTTTATGTGCAGCAAATCTTGGAAAAGATATTATAGGACATTTCATGGTGCACCATGCGAGCTCCTTCAAGCATAGGAGAAAATCTCAAAAGTCTGGTCCATGGACTGGTAGTTCAGCAGTGAAAGCGCTACTGAGGAATGGAAGGGCACATGAATCTGCACCTGATCCTCTCCTGTCAAATTTTGTGTGCAATGTGTCATTTTCAGACCCTAATGGTATCCCGAAAGATGTTTGTTCTGTCATTGATGCCCCTATCATTTCCGATACGAAAAGCGCGCCATCTTTGCCAGATGAAGGTTGTGAAAAGGATAATGAAGAGAGAAGGCAGAGGGCAACATTTGTGCAACAGTTGATTGCATCAACCATATTTTCAGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

204

Amino Acids

22.37

Weight (kDa)

5.6

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-Di19	PF05605	44 - 96	3.4e-18	Drought induced 19 protein (Di19), zinc-binding
Di19_C	PF14571	124 - 199	1.6e-12	Stress-induced protein Di19, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017301)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06340
malus_domestica	MD06G1165500.v1.1 MD14G1171000.v1.1
prunus_persica	Prupe.5G165100_v2.0.a1
pyrus_communis	pycom06g14790 pycom14g14290
rosa_chinensis	RchiOBHm_Chr7g0192501
rosa_laevigata	RLG00000004360
rosa_multiflora	Rmu_sc0003108.1_g000030
rosa_roxburghii	Rroxscaffold_3G00262970
rosa_rugosa	Rorug07G0001800
rosa_samantha	Rh7AG126000
rosa_wichuraiana	Rw7G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	506
AclWI	GGATC	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	209, 409
AcuI	CTGAAG	1 cut(s)	126
AfeI	AGCGCT	1 cut(s)	357
AfiI	CCNNNNNNNGG	3 cut(s)	190, 335, 524
AgsI	TTSAA	3 cut(s)	209, 214, 298
AjnI	CCWGG	1 cut(s)	65
AloI	GAACNNNNNNTCC	2 cut(s)	325, 357
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
Alw21I	GWGCWC	3 cut(s)	177, 282, 293
Alw26I	GTCTC	1 cut(s)	105
Alw44I	GTGCAC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	389
Aor51HI	AGCGCT	1 cut(s)	357
AoxI	GGCC	1 cut(s)	18
ApaLI	GTGCAC	1 cut(s)	278
ApeKI	GCWGC	3 cut(s)	35, 62, 239
ApoI	RAATTY	2 cut(s)	209, 409
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AspLEI	GCGC	3 cut(s)	358, 506, 508
AspS9I	GGNCC	3 cut(s)	18, 166, 326
AvaII	GGWCC	2 cut(s)	166, 326
BaeGI	GKGCMC	2 cut(s)	282, 379
BanII	GRGCYC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	13
Bbv12I	GWGCWC	3 cut(s)	177, 282, 293
BbvI	GCAGC	3 cut(s)	22, 49, 251
BccI	CCATC	1 cut(s)	517
BciT130I	CCWGG	1 cut(s)	67
BciVI	GTATCC	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	3 cut(s)	36, 63, 240
BlsI	GCNGC	3 cut(s)	37, 64, 241
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	2 cut(s)	166, 326
BmgT120I	GGNCC	3 cut(s)	18, 166, 326
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	67
BmrI	ACTGGG	1 cut(s)	164
BmsI	GCATC	3 cut(s)	60, 466, 596
BmuI	ACTGGG	1 cut(s)	164
BplI	GAGNNNNNCTC	2 cut(s)	298, 330
BpmI	CTGGAG	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 335, 524
Bse1I	ACTGG	2 cut(s)	170, 340
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	329
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	190, 335, 524
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	2 cut(s)	170, 340
BsePI	GCGCGC	1 cut(s)	504
BseSI	GKGCMC	2 cut(s)	282, 379
BseXI	GCAGC	3 cut(s)	22, 49, 251
BsgI	GTGCAG	2 cut(s)	258, 372
Bsh1236I	CGCG	1 cut(s)	506
BshFI	GGCC	1 cut(s)	20
BsiHKAI	GWGCWC	3 cut(s)	177, 282, 293
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	190, 335, 524
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	4 cut(s)	177, 282, 293, 379
Bsp143I	GATC	2 cut(s)	394, 604
Bsp19I	CCATGG	1 cut(s)	329
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	506
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	170, 340
BssECI	CCNNGG	1 cut(s)	329
BssHII	GCGCGC	1 cut(s)	504
BssMI	GATC	2 cut(s)	394, 604
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	579
Bst6I	CTCTTC	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	289, 506
BstDEI	CTNAG	1 cut(s)	362
BstDSI	CCRYGG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	75
BstFNI	CGCG	1 cut(s)	506
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	3 cut(s)	358, 506, 508
BstKTI	GATC	2 cut(s)	397, 607
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	2 cut(s)	394, 604
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 353, 514
BstNI	CCWGG	1 cut(s)	67
BstSCI	CCNGG	1 cut(s)	65
BstSLI	GKGCMC	2 cut(s)	282, 379
BstUI	CGCG	1 cut(s)	506
BstV1I	GCAGC	3 cut(s)	22, 49, 251
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	75
BtsI	GCAGTG	2 cut(s)	199, 354
BtsIMutI	CAGTG	3 cut(s)	177, 199, 354
Cac8I	GCNNGC	2 cut(s)	289, 506
CfoI	GCGC	3 cut(s)	358, 506, 508
Cfr13I	GGNCC	3 cut(s)	18, 166, 326
CviAII	CATG	7 cut(s)	32, 59, 138, 274, 284, 330, 380
CviJI	RGCY	3 cut(s)	20, 45, 291
CviKI_1	RGCY	3 cut(s)	20, 45, 291
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	2 cut(s)	396, 606
DpnII	GATC	2 cut(s)	394, 604
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	166, 326
Eco47III	AGCGCT	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	291
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	7 cut(s)	35, 62, 141, 277, 287, 333, 383
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	7 cut(s)	31, 58, 137, 273, 283, 329, 379
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	36, 63, 240
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	3 cut(s)	36, 63, 240
GlaI	GCGC	3 cut(s)	357, 505, 507
GluI	GCNGC	3 cut(s)	36, 63, 240
GsuI	CTGGAG	1 cut(s)	7
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	20
HhaI	GCGC	3 cut(s)	358, 506, 508
Hin1II	CATG	7 cut(s)	35, 62, 141, 277, 287, 333, 383
Hin6I	GCGC	3 cut(s)	356, 504, 506
HinP1I	GCGC	3 cut(s)	356, 504, 506
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	11, 101, 383
Hpy166II	GTNNAC	3 cut(s)	10, 157, 280
Hpy188I	TCNGA	4 cut(s)	106, 436, 493, 604
Hpy188III	TCNNGA	2 cut(s)	24, 451
Hpy8I	GTNNAC	3 cut(s)	10, 157, 280
HpyAV	CCTTC	5 cut(s)	101, 304, 366, 518, 546
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	8 cut(s)	73, 180, 239, 280, 389, 420, 574, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 353, 514
HpyF3I	CTNAG	1 cut(s)	362
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	7 cut(s)	35, 62, 141, 277, 287, 333, 383
HspAI	GCGC	3 cut(s)	356, 504, 506
Kzo9I	GATC	2 cut(s)	394, 604
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	9 cut(s)	37, 52, 79, 183, 309, 321, 405, 416, 531
Lsp1109I	GCAGC	3 cut(s)	22, 49, 251
LweI	GCATC	3 cut(s)	60, 466, 596
MaeII	ACGT	1 cut(s)	6
MalI	GATC	2 cut(s)	396, 606
MboI	GATC	2 cut(s)	394, 604
MboII	GAAGA	2 cut(s)	206, 557
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	4 cut(s)	177, 282, 293, 379
MluCI	AATT	2 cut(s)	209, 409
MlyI	GAGTC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	7 cut(s)	31, 56, 157, 184, 357, 408, 552
MspR9I	CCNGG	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	506
MwoI	GCNNNNNNNGC	3 cut(s)	59, 353, 514
NcoI	CCATGG	1 cut(s)	329
NdeII	GATC	2 cut(s)	394, 604
NlaIII	CATG	7 cut(s)	35, 62, 141, 277, 287, 333, 383
NlaIV	GGNNCC	1 cut(s)	168
PauI	GCGCGC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	101, 383
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	37, 64, 241
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
PpuMI	RGGWCCY	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	3 cut(s)	18, 166, 326
PspPPI	RGGWCCY	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	604
PteI	GCGCGC	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	293
SatI	GCNGC	3 cut(s)	36, 63, 240
Sau3AI	GATC	2 cut(s)	394, 604
Sau96I	GGNCC	3 cut(s)	18, 166, 326
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	67
SduI	GDGCHC	4 cut(s)	177, 282, 293, 379
SetI	ASST	5 cut(s)	9, 168, 293, 394, 529
SfaNI	GCATC	3 cut(s)	60, 466, 596
SinI	GGWCC	2 cut(s)	166, 326
Sse9I	AATT	2 cut(s)	209, 409
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	579
TaiI	ACGT	1 cut(s)	9
TasI	AATT	2 cut(s)	209, 409
TfiI	GAWTC	2 cut(s)	101, 383
TscAI	CASTG	3 cut(s)	177, 206, 354
TseI	GCWGC	3 cut(s)	35, 62, 239
TspDTI	ATGAA	7 cut(s)	20, 47, 132, 262, 396, 537, 558
TspRI	CASTG	3 cut(s)	177, 206, 354
Van91I	CCANNNNNTGG	1 cut(s)	335
VneI	GTGCAC	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	166, 326
XapI	RAATTY	2 cut(s)	209, 409
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.