Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003108.1

Orthogroup ID

OG0017301

Physical Location & Seq

Genomic Coordinates Reverse (-)

115331 .. 119306

Gene Structure 3976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003108.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atggacgttgactcgtgggcctccagagttcatgctgccaagagcctctctgctgttcatgctgctcggatgcactgtgataatcattttgccttggacgattctgaaggagatgatgatgcaaagtcttgttttctatgccctttttgttatgtggacattgaagtccctatgctctgcaaccacttggaggaagaacactgctttgacttcaaaaatgcagtttgtcctttatgtgcagcaaatctagggaaggatgtcatcggacatttcatggtgcagcacgcaagctccttcaagcacaggagaaaatctcaaaaatccggtccctggactggtagttcagcaatgaaagcgttgctgaagaatggaagggcatatgcacatgaatctgcacctgatcctctcctctcaccttttatctgcaatgtatcattttcagatcctaatggtattccgcaagatgtttgttctgatatcaatgcccctattatttccgatatgaaaagcactgagccatctttgccagatgaaggttgtgaaaaggataatgcagagagaaggcagagggcaacatttgtgcagcagttgattgcatcaaccatattctcagatctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Di19_C zf-Di19

Protein Analysis

206

Amino Acids

22.69

Weight (kDa)

5.36

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017301)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06340
malus_domestica	MD06G1165500.v1.1 MD14G1171000.v1.1
prunus_persica	Prupe.5G165100_v2.0.a1
pyrus_communis	pycom06g14790 pycom14g14290
rosa_chinensis	RchiOBHm_Chr7g0192501
rosa_laevigata	RLG00000004360
rosa_multiflora	Rmu_sc0003108.1_g000030
rosa_roxburghii	Rroxscaffold_3G00262970
rosa_rugosa	Rorug07G0001800
rosa_samantha	Rh7AG126000
rosa_wichuraiana	Rw7G010850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	2 cut(s)	395, 437
AcuI	CTGAAG	2 cut(s)	126, 383
AfiI	CCNNNNNNNGG	4 cut(s)	190, 330, 335, 533
AgsI	TTSAA	3 cut(s)	164, 214, 298
AjnI	CCWGG	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	325, 357
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
AlwI	GGATC	2 cut(s)	395, 437
AoxI	GGCC	1 cut(s)	18
ApeKI	GCWGC	5 cut(s)	35, 62, 239, 280, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
AspS9I	GGNCC	2 cut(s)	18, 326
AsuHPI	GGTGA	1 cut(s)	405
AvaII	GGWCC	1 cut(s)	326
BauI	CACGAG	1 cut(s)	13
BbvI	GCAGC	5 cut(s)	22, 49, 251, 292, 595
BccI	CCATC	1 cut(s)	526
BciT130I	CCWGG	1 cut(s)	331
BfaI	CTAG	1 cut(s)	248
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	5 cut(s)	36, 63, 240, 281, 584
BlsI	GCNGC	5 cut(s)	37, 64, 241, 282, 585
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	18, 326
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	3 cut(s)	60, 109, 605
BplI	GAGNNNNNCTC	2 cut(s)	298, 330
BpmI	CTGGAG	1 cut(s)	7
BsaJI	CCNNGG	2 cut(s)	93, 329
BsaWI	WCCGGW	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 330, 335, 533
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	354, 433
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	93, 329
BseGI	GGATG	2 cut(s)	75, 262
BseLI	CCNNNNNNNGG	4 cut(s)	190, 330, 335, 533
BseMI	GCAATG	2 cut(s)	354, 433
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	5 cut(s)	22, 49, 251, 292, 595
BsgI	GTGCAG	4 cut(s)	258, 299, 378, 602
BshFI	GGCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	2 cut(s)	152, 312
BslI	CCNNNNNNNGG	4 cut(s)	190, 330, 335, 533
BsmFI	GGGAC	2 cut(s)	152, 312
BsnI	GGCC	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	400, 442, 613
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	395, 437
BsrDI	GCAATG	2 cut(s)	354, 433
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	93, 329
BssMI	GATC	3 cut(s)	400, 442, 613
BssSI	CACGAG	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	285, 289
BstDEI	CTNAG	2 cut(s)	513, 610
BstF5I	GGATG	2 cut(s)	75, 262
BstKTI	GATC	3 cut(s)	403, 445, 616
BstMBI	GATC	3 cut(s)	400, 442, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 353, 523
BstNI	CCWGG	1 cut(s)	331
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	5 cut(s)	22, 49, 251, 292, 595
BstX2I	RGATCY	2 cut(s)	442, 613
BstYI	RGATCY	2 cut(s)	442, 613
BsuRI	GGCC	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	75, 262
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	73, 199, 510
Cac8I	GCNNGC	2 cut(s)	285, 289
Cfr13I	GGNCC	2 cut(s)	18, 326
CviAII	CATG	4 cut(s)	32, 59, 274, 386
CviJI	RGCY	4 cut(s)	20, 45, 291, 517
CviKI_1	RGCY	4 cut(s)	20, 45, 291, 517
DdeI	CTNAG	2 cut(s)	513, 610
DpnI	GATC	3 cut(s)	402, 444, 615
DpnII	GATC	3 cut(s)	400, 442, 613
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	326
Eco57I	CTGAAG	2 cut(s)	126, 383
EcoRII	CCWGG	1 cut(s)	329
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	4 cut(s)	35, 62, 277, 389
FaqI	GGGAC	2 cut(s)	152, 312
FatI	CATG	4 cut(s)	31, 58, 273, 385
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	5 cut(s)	36, 63, 240, 281, 584
FokI	GGATG	2 cut(s)	82, 269
Fsp4HI	GCNGC	5 cut(s)	36, 63, 240, 281, 584
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	5 cut(s)	36, 63, 240, 281, 584
GsuI	CTGGAG	1 cut(s)	7
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	4 cut(s)	35, 62, 277, 389
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	3 cut(s)	11, 101, 389
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	405
Hpy166II	GTNNAC	2 cut(s)	10, 157
Hpy188I	TCNGA	7 cut(s)	69, 106, 266, 442, 475, 499, 613
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	2 cut(s)	10, 157
HpyAV	CCTTC	6 cut(s)	101, 247, 304, 366, 527, 555
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 353, 523
HpyF3I	CTNAG	2 cut(s)	513, 610
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	35, 62, 277, 389
Kzo9I	GATC	3 cut(s)	400, 442, 613
LmnI	GCTCC	1 cut(s)	296
LpnPI	CCDG	8 cut(s)	37, 289, 316, 321, 337, 343, 411, 540
Lsp1109I	GCAGC	5 cut(s)	22, 49, 251, 292, 595
LweI	GCATC	3 cut(s)	60, 109, 605
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	6
MalI	GATC	3 cut(s)	402, 444, 615
MboI	GATC	3 cut(s)	400, 442, 613
MboII	GAAGA	2 cut(s)	206, 376
MflI	RGATCY	2 cut(s)	442, 613
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	6 cut(s)	31, 56, 184, 414, 419, 561
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	59, 353, 523
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	3 cut(s)	400, 442, 613
NlaIII	CATG	4 cut(s)	35, 62, 277, 389
NlaIV	GGNNCC	1 cut(s)	328
PfeI	GAWTC	2 cut(s)	101, 389
PkrI	GCNGC	5 cut(s)	37, 64, 241, 282, 585
PleI	GAGTC	1 cut(s)	5
PpsI	GAGTC	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	2 cut(s)	18, 326
PsuI	RGATCY	2 cut(s)	442, 613
SatI	GCNGC	5 cut(s)	36, 63, 240, 281, 584
Sau3AI	GATC	3 cut(s)	400, 442, 613
Sau96I	GGNCC	2 cut(s)	18, 326
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	331
SetI	ASST	5 cut(s)	9, 293, 400, 418, 538
SfaNI	GCATC	3 cut(s)	60, 109, 605
SinI	GGWCC	1 cut(s)	326
SsiI	CCGC	1 cut(s)	458
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	101, 389
TscAI	CASTG	3 cut(s)	80, 206, 517
TseI	GCWGC	5 cut(s)	35, 62, 239, 280, 583
TspDTI	ATGAA	7 cut(s)	20, 47, 262, 365, 402, 518, 546
TspRI	CASTG	3 cut(s)	80, 206, 517
VpaK11BI	GGWCC	1 cut(s)	326
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.