FvH4_5g27000

Belongs to the histidine acid phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0028008
Physical Location & Seq
Reverse (-)
18307433 .. 18310682
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27000.t1

Sequence Viewer

Length: 618 bp
ATGATTCGTGTTGTTTTCGTTTTGAATTTGGAGCTGGATGTGAATTTTTGTGTGGAAGATGAATATATCACGCATTTCGGAGATAAGGTCATTCTGGAAGATCCGGTTGAGAGCTGGCCGATATGTGATTGCTTGATTGCCTTCCATTCGTTTGGCTATCCTCTGGAGAAGGCCGAAGTTTCTCTTGTTAGGAAGGACTCCTCTATGTTGAACGGACTTGAAAATGCAAGTGTTGAGATGGAGGAAGCCAAGGCTAGGTTGAATGAGATCATAAATTCAGGTGTAAAGCCATCGCAACATCTCCTTGGATGTCTGATGGAGGTTACGTTAACTAAGAATGTCACTGAACAAGTGAGACAGCTAGCCAAAGATGAAGATGAGGAACTTACGACAATCTCATATGATGTGATACTTCCTTATGACCAAGCAAGGCCCTACTTACTTGCTGATGGTGTCATCCCAAATGAGTATGGCATTAATCCATCACAGGAGCTCAAGATTGGTTCAAAGATCGCTCGTCCGTTACTGGGTGAAATAATGATTGATCTGAGGAATACTAGTGAAGAAGCCTTCAGCGTTGCAGAACCAAAGAGTACTCAGGATGAACCTTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000827 GO:0000828 GO:0000829 GO:0000832 GO:0002376 GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009814 GO:0009817 GO:0009861 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0019222 GO:0019637 GO:0019751 GO:0030554 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032553 GO:0032555 GO:0032559 GO:0032958 GO:0033857 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043647 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046136 GO:0046165 GO:0046173 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0062012 GO:0062013 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0090407 GO:0097159 GO:0097367 GO:0098542 GO:1900150 GO:1900367 GO:1901265 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1904965 GO:1904966 GO:1905034 GO:1905036 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko04070 map04070
Pfam Domains
Protein Families
His_Phos_2

Protein Analysis

206

Amino Acids

23.04

Weight (kDa)

4.44

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPIP5K2_N PF18086 23 - 76 6.6e-15 Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028008)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g27000
rosa_multiflora Rmu_ssc0000399.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 95
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 3 cut(s) 25, 43, 274
AcuI CTGAAG 1 cut(s) 556
AfaI GTAC 1 cut(s) 595
AfiI CCNNNNNNNGG 2 cut(s) 255, 527
AgsI TTSAA 6 cut(s) 25, 211, 221, 262, 507, 613
AhlI ACTAGT 1 cut(s) 557
AluBI AGCT 4 cut(s) 34, 114, 361, 493
AluI AGCT 4 cut(s) 34, 114, 361, 493
Alw21I GWGCWC 1 cut(s) 495
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 1 cut(s) 95
AoxI GGCC 3 cut(s) 116, 171, 431
ApoI RAATTY 3 cut(s) 25, 43, 274
AseI ATTAAT 1 cut(s) 477
AspS9I GGNCC 1 cut(s) 432
AsuHPI GGTGA 1 cut(s) 542
AsuNHI GCTAGC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 495
Bbv12I GWGCWC 1 cut(s) 495
BccI CCATC 5 cut(s) 232, 298, 310, 443, 490
BcoDI GTCTC 1 cut(s) 349
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 3 cut(s) 255, 362, 558
BmcAI AGTACT 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 432
BmrI ACTGGG 1 cut(s) 536
BmtI GCTAGC 1 cut(s) 365
BmuI ACTGGG 1 cut(s) 536
BpmI CTGGAG 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 479
BsaJI CCNNGG 2 cut(s) 249, 304
BsaWI WCCGGW 1 cut(s) 103
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 311, 341
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 527
Bse1I ACTGG 1 cut(s) 531
BseDI CCNNGG 2 cut(s) 249, 304
BseGI GGATG 4 cut(s) 43, 314, 456, 607
BseLI CCNNNNNNNGG 2 cut(s) 255, 527
BseMII CTCAG 2 cut(s) 539, 611
BseNI ACTGG 1 cut(s) 531
BseRI GAGGAG 1 cut(s) 190
BshFI GGCC 3 cut(s) 118, 173, 433
BsiHKAI GWGCWC 1 cut(s) 495
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 2 cut(s) 255, 527
BsmAI GTCTC 1 cut(s) 349
BsnI GGCC 3 cut(s) 118, 173, 433
Bsp1286I GDGCHC 1 cut(s) 495
Bsp143I GATC 4 cut(s) 100, 267, 510, 544
BspANI GGCC 3 cut(s) 118, 173, 433
BspCNI CTCAG 2 cut(s) 540, 610
BspOI GCTAGC 1 cut(s) 365
BspPI GGATC 1 cut(s) 95
BsrI ACTGG 1 cut(s) 531
BssECI CCNNGG 2 cut(s) 249, 304
BssMI GATC 4 cut(s) 100, 267, 510, 544
BssT1I CCWWGG 2 cut(s) 249, 304
BstC8I GCNNGC 2 cut(s) 116, 363
BstDEI CTNAG 3 cut(s) 333, 548, 597
BstF5I GGATG 4 cut(s) 43, 314, 456, 607
BstKTI GATC 4 cut(s) 103, 270, 513, 547
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 4 cut(s) 100, 267, 510, 544
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 152
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 3 cut(s) 118, 173, 433
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 4 cut(s) 43, 314, 456, 607
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 116, 363
Cfr13I GGNCC 1 cut(s) 432
Csp6I GTAC 1 cut(s) 594
CviQI GTAC 1 cut(s) 594
DdeI CTNAG 3 cut(s) 333, 548, 597
DpnI GATC 4 cut(s) 102, 269, 512, 546
DpnII GATC 4 cut(s) 100, 267, 510, 544
EaeI YGGCCR 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 493
Eco130I CCWWGG 2 cut(s) 249, 304
Eco24I GRGCYC 1 cut(s) 495
Eco53kI GAGCTC 1 cut(s) 493
Eco57I CTGAAG 1 cut(s) 556
EcoICRI GAGCTC 1 cut(s) 493
EcoO109I RGGNCCY 1 cut(s) 432
EcoT14I CCWWGG 2 cut(s) 249, 304
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 2 cut(s) 249, 304
FaiI YATR 8 cut(s) 66, 124, 206, 272, 400, 402, 420, 471
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FauNDI CATATG 1 cut(s) 400
FokI GGATG 4 cut(s) 50, 321, 443, 614
FriOI GRGCYC 1 cut(s) 495
FspBI CTAG 3 cut(s) 255, 362, 558
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 3 cut(s) 118, 173, 433
HapII CCGG 1 cut(s) 104
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 2 cut(s) 4, 197
HpaI GTTAAC 1 cut(s) 330
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 3 cut(s) 80, 315, 549
Hpy188III TCNNGA 4 cut(s) 95, 164, 496, 599
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 4 cut(s) 151, 163, 187, 580
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 2 cut(s) 227, 581
HpyF3I CTNAG 3 cut(s) 333, 548, 597
HpySE526I ACGT 1 cut(s) 326
KspAI GTTAAC 1 cut(s) 330
Kzo9I GATC 4 cut(s) 100, 267, 510, 544
LmnI GCTCC 2 cut(s) 31, 490
LpnPI CCDG 9 cut(s) 20, 80, 100, 117, 149, 264, 473, 512, 584
MaeI CTAG 3 cut(s) 255, 362, 558
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 3 cut(s) 322, 340, 522
MalI GATC 4 cut(s) 102, 269, 512, 546
MboI GATC 4 cut(s) 100, 267, 510, 544
MboII GAAGA 4 cut(s) 68, 110, 386, 575
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 495
MluCI AATT 3 cut(s) 25, 43, 274
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 6 cut(s) 171, 211, 235, 313, 373, 543
MseI TTAA 2 cut(s) 329, 477
MspI CCGG 1 cut(s) 104
NdeI CATATG 1 cut(s) 400
NdeII GATC 4 cut(s) 100, 267, 510, 544
NheI GCTAGC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 495
PspPI GGNCC 1 cut(s) 432
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 595
RsaNI GTAC 1 cut(s) 594
SacI GAGCTC 1 cut(s) 495
SaqAI TTAA 2 cut(s) 329, 477
Sau3AI GATC 4 cut(s) 100, 267, 510, 544
Sau96I GGNCC 1 cut(s) 432
ScaI AGTACT 1 cut(s) 595
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 1 cut(s) 495
SmlI CTYRAG 1 cut(s) 494
SmoI CTYRAG 1 cut(s) 494
SpeI ACTAGT 1 cut(s) 557
Sse9I AATT 3 cut(s) 25, 43, 274
SspMI CTAG 3 cut(s) 255, 362, 558
SstI GAGCTC 1 cut(s) 495
StyI CCWWGG 2 cut(s) 249, 304
TaiI ACGT 1 cut(s) 329
TasI AATT 3 cut(s) 25, 43, 274
TatI WGTACW 1 cut(s) 593
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 329, 477
Tru9I TTAA 2 cut(s) 329, 477
TscAI CASTG 1 cut(s) 349
TseFI GTSAC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 3 cut(s) 75, 387, 618
TspGWI ACGGA 2 cut(s) 228, 510
TspRI CASTG 1 cut(s) 349
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 3 cut(s) 25, 43, 274
XspI CTAG 3 cut(s) 255, 362, 558
ZrmI AGTACT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.