Rmu_ssc0000399.1_g000001

Belongs to the histidine acid phosphatase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000399.1
OG0028008
Physical Location & Seq
Reverse (-)
1 .. 1082
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000399.1_g000001.1.cds

Sequence Viewer

Length: 236 bp
atggagaagaagattaagattggggtttgtgtgatggaaaagaaggtgttctcggcgccgatggggcagattctcgagcgccttcaggaatttggcgaattcgagattacacatttcggtgacaaggtcattctggaagatccggttgagagctggccgatttgtgattgcttgattgccttccattcctctggctatcctctggaaaaggctgaagcatatgctaatttaaggaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0000827 GO:0000828 GO:0000829 GO:0000832 GO:0002376 GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005975 GO:0006020 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009814 GO:0009817 GO:0009861 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017076 GO:0019222 GO:0019637 GO:0019751 GO:0030554 GO:0030656 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0032553 GO:0032555 GO:0032559 GO:0032958 GO:0033857 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043207 GO:0043647 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046136 GO:0046165 GO:0046173 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0062012 GO:0062013 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0090407 GO:0097159 GO:0097367 GO:0098542 GO:1900150 GO:1900367 GO:1901265 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1904965 GO:1904966 GO:1905034 GO:1905036 GO:2000068
KEGG Pathways
Metabolic & Signaling
ko04070 map04070
Pfam Domains
Protein Families
His_Phos_2

Protein Analysis

78

Amino Acids

8.91

Weight (kDa)

5.07

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028008)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g27000
rosa_multiflora Rmu_ssc0000399.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 2 cut(s) 89, 98
AcuI CTGAAG 2 cut(s) 68, 234
AcyI GRCGYC 1 cut(s) 56
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
AlwI GGATC 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 74
AoxI GGCC 1 cut(s) 155
ApoI RAATTY 2 cut(s) 89, 98
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 2 cut(s) 58, 81
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 74
BanI GGYRCC 1 cut(s) 55
BccI CCATC 2 cut(s) 28, 55
BfoI RGCGCY 2 cut(s) 59, 82
BglI GCCNNNNNGGC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 56
BsaWI WCCGGW 1 cut(s) 142
BshFI GGCC 1 cut(s) 157
BshNI GGYRCC 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 74
BsiSI CCGG 1 cut(s) 143
BsnI GGCC 1 cut(s) 157
BsoBI CYCGRG 1 cut(s) 74
Bsp143I GATC 1 cut(s) 139
BspANI GGCC 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 55
BssMI GATC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 155
BstH2I RGCGCY 2 cut(s) 59, 82
BstHHI GCGC 2 cut(s) 58, 81
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 139
BstXI CCANNNNNNTGG 1 cut(s) 191
BstYI RGATCY 1 cut(s) 139
BsuRI GGCC 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 155
CfoI GCGC 2 cut(s) 58, 81
CviJI RGCY 4 cut(s) 153, 157, 195, 212
CviKI_1 RGCY 4 cut(s) 153, 157, 195, 212
DinI GGCGCC 1 cut(s) 57
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 155
Eco57I CTGAAG 2 cut(s) 68, 234
Eco88I CYCGRG 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 98
EgeI GGCGCC 1 cut(s) 57
EheI GGCGCC 1 cut(s) 57
FaiI YATR 2 cut(s) 220, 222
FauNDI CATATG 1 cut(s) 220
GlaI GCGC 2 cut(s) 57, 80
HaeII RGCGCY 2 cut(s) 59, 82
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 143
HhaI GCGC 2 cut(s) 58, 81
Hin1I GRCGYC 1 cut(s) 56
Hin6I GCGC 2 cut(s) 56, 79
HinP1I GCGC 2 cut(s) 56, 79
HinfI GANTC 1 cut(s) 70
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 131
Hpy188III TCNNGA 5 cut(s) 74, 86, 103, 134, 203
HpyAV CCTTC 3 cut(s) 37, 92, 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
Hsp92I GRCGYC 1 cut(s) 56
HspAI GCGC 2 cut(s) 56, 79
KasI GGCGCC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 6 cut(s) 71, 119, 139, 156, 177, 188
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 3 cut(s) 19, 22, 149
MflI RGATCY 1 cut(s) 139
MluCI AATT 3 cut(s) 89, 98, 226
Mly113I GGCGCC 1 cut(s) 56
MnlI CCTC 2 cut(s) 199, 210
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 2 cut(s) 15, 230
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 64
NarI GGCGCC 1 cut(s) 56
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 125
PluTI GGCGCC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 125
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 2 cut(s) 15, 230
Sau3AI GATC 1 cut(s) 139
SetI ASST 3 cut(s) 48, 129, 155
SfoI GGCGCC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 89, 98, 226
SspDI GGCGCC 1 cut(s) 55
TaqI TCGA 2 cut(s) 75, 102
TasI AATT 3 cut(s) 89, 98, 226
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 2 cut(s) 15, 230
Tru9I TTAA 2 cut(s) 15, 230
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
Tth111I GACNNNGTC 1 cut(s) 125
XapI RAATTY 2 cut(s) 89, 98
XhoI CTCGAG 1 cut(s) 74
XmnI GAANNNNTTC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.