FvH4_5g27420

Serine threonine-protein phosphatase 7 long form homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0024156
Physical Location & Seq
Forward (+)
18694584 .. 18695251
668 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27420.t1

Sequence Viewer

Length: 444 bp
ATGCTCTTTACCATTATGCGCATACGGCCACTACGTGATTTGCTAGTTAATCAGCCCCAGGATCAGCCGGAAGACGAAGAGATGAGGTTTCCGCTACTTTTGTTGTGGTCCCGGTTATTAAAGAAAGCTTTGAATAGGAACATGAACAAAAATGCAGCAAGTTATTGCTTCATTCTGCAGAACCTTGAGCTCAACCAATGCATCATCAATCCGTATGAGAGGTTTCCTGCACACTGTGGCAACCAGCTTGCATTGGCTTGTTCAACGACCTATTGCATCAACTTCAAGAAAATCGCCCCTCACGAACCAAACCGTAACTATGCACAGTTTGGTTTCACAAACATTCATCCGGAATCGGTTCTTGCACTTGACTCTGTCAACATTCCGTATAAAACCAAGGGTTTAATTCCTATTGTAAACTTTTATGATGATCCTGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

148

Amino Acids

17.05

Weight (kDa)

8.29

Isoelectric Point (pI)

46.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 16 - 120 2.6e-07 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024156)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g27420
prunus_persica Prupe.5G202300_v2.0.a1 Prupe.6G357900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 20
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 1 cut(s) 92
AclWI GGATC 2 cut(s) 69, 425
AcoI YGGCCR 1 cut(s) 26
AdeI CACNNNGTG 2 cut(s) 35, 236
AgsI TTSAA 3 cut(s) 133, 264, 286
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 3 cut(s) 128, 190, 247
AluI AGCT 3 cut(s) 128, 190, 247
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 2 cut(s) 69, 425
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 357
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 108
AsuC2I CCSGG 1 cut(s) 112
AvaII GGWCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 1 cut(s) 112
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 59, 112
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 110
BmrFI CCNGG 2 cut(s) 59, 112
BmsI GCATC 2 cut(s) 210, 285
BpiI GAAGAC 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 112
BsaAI YACGTR 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 57, 396
BsaWI WCCGGW 1 cut(s) 349
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 2 cut(s) 57, 396
BseGI GGATG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 167
BsgI GTGCAG 1 cut(s) 213
BshFI GGCC 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 3 cut(s) 68, 112, 350
BslFI GGGAC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 349
Bsp143I GATC 2 cut(s) 61, 430
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 28
BspEI TCCGGA 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 110
BspMAI CTGCAG 1 cut(s) 180
BspPI GGATC 2 cut(s) 69, 425
BssECI CCNNGG 2 cut(s) 57, 396
BssMI GATC 2 cut(s) 61, 430
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 3 cut(s) 236, 314, 327
Bst6I CTCTTC 1 cut(s) 72
BstBAI YACGTR 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 249
BstF5I GGATG 1 cut(s) 346
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 2 cut(s) 64, 433
BstMBI GATC 2 cut(s) 61, 430
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 57, 110
BstSFI CTRYAG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 249
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 108
CviAII CATG 1 cut(s) 142
CviJI RGCY 7 cut(s) 28, 55, 67, 128, 190, 247, 257
CviKI_1 RGCY 7 cut(s) 28, 55, 67, 128, 190, 247, 257
DpnI GATC 2 cut(s) 63, 432
DpnII GATC 2 cut(s) 61, 430
DraIII CACNNNGTG 2 cut(s) 35, 236
EaeI YGGCCR 1 cut(s) 26
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 203
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 145
FaiI YATR 7 cut(s) 17, 23, 143, 216, 321, 390, 426
FaqI GGGAC 1 cut(s) 94
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 333
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 1 cut(s) 156
FspAI RTGCGCAY 1 cut(s) 20
FspBI CTAG 1 cut(s) 44
FspI TGCGCA 1 cut(s) 20
GlaI GCGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 28
HapII CCGG 3 cut(s) 68, 112, 350
HhaI GCGC 1 cut(s) 21
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 2 cut(s) 353, 371
HpaII CCGG 3 cut(s) 68, 112, 350
Hpy166II GTNNAC 2 cut(s) 379, 418
Hpy188III TCNNGA 3 cut(s) 286, 302, 350
Hpy8I GTNNAC 2 cut(s) 379, 418
HpyCH4III ACNGT 3 cut(s) 236, 314, 327
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 8 cut(s) 155, 178, 201, 230, 251, 276, 323, 365
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 1 cut(s) 19
Kpn2I TCCGGA 1 cut(s) 349
Kzo9I GATC 2 cut(s) 61, 430
LpnPI CCDG 7 cut(s) 44, 71, 81, 125, 240, 257, 363
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 2 cut(s) 210, 285
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 63, 432
MboI GATC 2 cut(s) 61, 430
MboII GAAGA 2 cut(s) 83, 89
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 1 cut(s) 405
MlyI GAGTC 1 cut(s) 365
MnlI CCTC 3 cut(s) 78, 213, 309
Mph1103I ATGCAT 1 cut(s) 203
MroI TCCGGA 1 cut(s) 349
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 3 cut(s) 48, 119, 404
MspI CCGG 3 cut(s) 68, 112, 350
MspR9I CCNGG 2 cut(s) 59, 112
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 25
NciI CCSGG 1 cut(s) 112
NdeII GATC 2 cut(s) 61, 430
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 1 cut(s) 110
NsbI TGCGCA 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 203
PcsI WCGNNNNNNNCGW 2 cut(s) 31, 300
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 353
PflFI GACNNNGTC 1 cut(s) 374
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Ppu21I YACGTR 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 110
PspPI GGNCC 1 cut(s) 108
PstI CTGCAG 1 cut(s) 180
PsyI GACNNNGTC 1 cut(s) 374
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 3 cut(s) 48, 119, 404
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 61, 430
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 59, 112
SduI GDGCHC 1 cut(s) 192
SetI ASST 8 cut(s) 37, 89, 130, 186, 192, 224, 249, 272
SfaNI GCATC 2 cut(s) 210, 285
SfcI CTRYAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 405
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 2 cut(s) 57, 110
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 3 cut(s) 236, 314, 327
TaiI ACGT 1 cut(s) 37
TasI AATT 1 cut(s) 405
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 3 cut(s) 48, 119, 404
Tru9I TTAA 3 cut(s) 48, 119, 404
TscAI CASTG 1 cut(s) 239
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 158, 160, 335
TspGWI ACGGA 2 cut(s) 201, 375
TspRI CASTG 1 cut(s) 239
Tth111I GACNNNGTC 1 cut(s) 374
VpaK11BI GGWCC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.