Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0028069

Physical Location & Seq

Genomic Coordinates Forward (+)

16491442 .. 16492882

Gene Structure 1441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGACCTCAAGCTCTCCACCCTCCTCTGCTTCACTCTATTATTGTTCACCATTCTCATCCCAACTCTCTCCGAACTCTGCAACCCACATGACAAGAAAGTCCTCTTTGAAATCAAGGCAGCCTTCAACAACCCTTACATCTTAATTTCATGGAACCCCGACGTCGACTGCAGTACTACTTGGAACAACGTCGAATGTGATCCCACCACCAACCGCATCATCTCCCTCACTATCTTATCCTATGATCGTATCTCCGGCCAAATCCCTCCCCAGGTCGGCGACTTGCCGTATCTCGAAACCCTAGTGATTCGCAAGCAACCAAATATAACAGGTCCTATACAACCCTCCATTGCAAAGCTCAAACATCTCAAGACGCTTAGACTCGGGTGGAACAACCTCACAGGCTCAGTCCCTGACTTCATCAGCCAACTCAAGAACTTGACTTTCCTTGAACTCTACTACAACAATCTCACTGGCCCCATCCCCAGCTCGCTTTCTATGCTACCAAATTTGGCTTCTCTTCGTCTAGACCGCAACAAGCTCACAGGTAAAATTCCGAGCTCATTCGGACAATTCGTTGGCGTCATTCCAGACCTCTACCTCTCCCACAACCAGCTAGCAAGATGGACTTCAGAGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

214

Amino Acids

23.94

Weight (kDa)

8.33

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 67	9.2e-07	Leucine rich repeat N-terminal domain
LRR_14	PF23598	79 - 179	4.6e-08	Leucine-rich repeat region
LRR_8	PF13855	98 - 157	9.7e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028069)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22810
rosa_multiflora	Rmu_sc0003742.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AatII	GACGTC	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	2 cut(s)	214, 532
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	2 cut(s)	508, 552
AcuI	CTGAAG	1 cut(s)	615
AcyI	GRCGYC	2 cut(s)	162, 582
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	2 cut(s)	271, 275
AgsI	TTSAA	3 cut(s)	110, 127, 452
AjnI	CCWGG	1 cut(s)	270
AjuI	GAANNNNNNNTTGG	2 cut(s)	499, 531
AluBI	AGCT	6 cut(s)	13, 358, 489, 541, 561, 616
AluI	AGCT	6 cut(s)	13, 358, 489, 541, 561, 616
Alw21I	GWGCWC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	413
Ama87I	CYCGRG	1 cut(s)	383
AoxI	GGCC	2 cut(s)	256, 475
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	508, 552
AspS9I	GGNCC	3 cut(s)	4, 332, 476
AsuHPI	GGTGA	1 cut(s)	40
AsuNHI	GCTAGC	1 cut(s)	616
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	2 cut(s)	4, 332
BanII	GRGCYC	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	2 cut(s)	488, 618
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	272
BfaI	CTAG	3 cut(s)	302, 527, 617
BfmI	CTRYAG	1 cut(s)	169
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmcAI	AGTACT	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	4, 332
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	3 cut(s)	4, 332, 476
BmiI	GGNNCC	2 cut(s)	155, 478
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	225
BmtI	GCTAGC	1 cut(s)	620
BpuEI	CTTGAG	2 cut(s)	353, 416
BsaHI	GRCGYC	2 cut(s)	162, 582
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 275
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	57, 480
BseLI	CCNNNNNNNGG	2 cut(s)	271, 275
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	485
BshFI	GGCC	2 cut(s)	258, 477
BsiHKAI	GWGCWC	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	271, 275
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	258, 477
BsoBI	CYCGRG	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp143I	GATC	2 cut(s)	199, 244
BspACI	CCGC	2 cut(s)	214, 532
BspANI	GGCC	2 cut(s)	258, 477
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	155, 478
BspMAI	CTGCAG	1 cut(s)	173
BspOI	GCTAGC	1 cut(s)	620
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	2 cut(s)	199, 244
BssNI	GRCGYC	2 cut(s)	162, 582
Bst2UI	CCWGG	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	2 cut(s)	162, 582
BstC8I	GCNNGC	3 cut(s)	314, 491, 618
BstDEI	CTNAG	2 cut(s)	377, 406
BstF5I	GGATG	2 cut(s)	57, 480
BstKTI	GATC	2 cut(s)	202, 247
BstMBI	GATC	2 cut(s)	199, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	258, 477
BtsCI	GGATG	2 cut(s)	57, 480
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	3 cut(s)	314, 491, 618
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr13I	GGNCC	3 cut(s)	4, 332, 476
CseI	GACGC	2 cut(s)	382, 571
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	2 cut(s)	89, 150
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	377, 406
DpnI	GATC	2 cut(s)	201, 246
DpnII	GATC	2 cut(s)	199, 244
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	563
Eco47I	GGWCC	2 cut(s)	4, 332
Eco53kI	GAGCTC	1 cut(s)	561
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	563
FaeI	CATG	2 cut(s)	92, 153
FaiI	YATR	7 cut(s)	90, 151, 243, 326, 338, 500, 640
FalI	AAGNNNNNCTT	3 cut(s)	107, 139, 613
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	2 cut(s)	88, 149
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	44, 467
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	3 cut(s)	302, 527, 617
GluI	GCNGC	1 cut(s)	120
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	258, 477
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	2 cut(s)	382, 571
Hin1I	GRCGYC	2 cut(s)	162, 582
Hin1II	CATG	2 cut(s)	92, 153
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	2 cut(s)	307, 381
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	48, 166
Hpy188I	TCNGA	4 cut(s)	73, 558, 569, 634
Hpy188III	TCNNGA	5 cut(s)	293, 370, 433, 527, 590
Hpy8I	GTNNAC	2 cut(s)	48, 166
Hpy99I	CGWCG	3 cut(s)	164, 167, 194
HpyAV	CCTTC	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	162, 189
HpyCH4V	TGCA	3 cut(s)	81, 171, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	2 cut(s)	377, 406
HpySE526I	ACGT	2 cut(s)	162, 189
Hsp92I	GRCGYC	2 cut(s)	162, 582
Hsp92II	CATG	2 cut(s)	92, 153
Kzo9I	GATC	2 cut(s)	199, 244
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	3 cut(s)	302, 527, 617
MaeII	ACGT	2 cut(s)	162, 189
MalI	GATC	2 cut(s)	201, 246
MboI	GATC	2 cut(s)	199, 244
MboII	GAAGA	1 cut(s)	512
MhlI	GDGCHC	1 cut(s)	563
MluCI	AATT	4 cut(s)	144, 508, 552, 572
MlyI	GAGTC	1 cut(s)	375
MseI	TTAA	1 cut(s)	143
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	499
NdeII	GATC	2 cut(s)	199, 244
NheI	GCTAGC	1 cut(s)	616
NlaIII	CATG	2 cut(s)	92, 153
NlaIV	GGNNCC	2 cut(s)	155, 478
PcsI	WCGNNNNNNNCGW	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
PpuMI	RGGWCCY	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	563
Psp5II	RGGWCCY	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	2 cut(s)	155, 478
PspPI	GGNCC	3 cut(s)	4, 332, 476
PspPPI	RGGWCCY	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	413
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	563
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	199, 244
Sau96I	GGNCC	3 cut(s)	4, 332, 476
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	563
SfaNI	GCATC	1 cut(s)	225
SfcI	CTRYAG	1 cut(s)	169
SinI	GGWCC	2 cut(s)	4, 332
SmlI	CTYRAG	3 cut(s)	8, 368, 431
SmoI	CTYRAG	3 cut(s)	8, 368, 431
Sse9I	AATT	4 cut(s)	144, 508, 552, 572
SsiI	CCGC	2 cut(s)	214, 532
SspMI	CTAG	3 cut(s)	302, 527, 617
SstI	GAGCTC	1 cut(s)	563
StyD4I	CCNGG	1 cut(s)	270
TaiI	ACGT	2 cut(s)	165, 192
TaqI	TCGA	3 cut(s)	165, 192, 294
TasI	AATT	4 cut(s)	144, 508, 552, 572
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	138, 409
TspRI	CASTG	1 cut(s)	478
VpaK11BI	GGWCC	2 cut(s)	4, 332
XapI	RAATTY	2 cut(s)	508, 552
XbaI	TCTAGA	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	3 cut(s)	302, 527, 617
ZraI	GACGTC	1 cut(s)	163
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.