Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003742.1

Orthogroup ID

OG0028069

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 713

Gene Structure 712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003742.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggacctcaagctctccaccctcctctgcttcactctattattgtgcaccattcttatcccaactctctccgaactctgcaatccacaggacaagaaagtcctcttgcaaatcaagacagccttcaacaatccctacatcttaatttcatggaaccccgacgtcgactgctgtactacctggaacaacgtcgaatgtgatcccatcaccaaccgcatcaactccctcaccatcttatcctacgatcaaatctccggccaaatccctccccaagttggtgatttgccatacctcgaaactctcgtgattcgcaagcaaccaaatataaccggtcctatccaaccctccattgccaagctcaaacatctcaagacgcttagactcggctggaacaacctcacaggctcagtcccggacttcatcagccaactcaagaacctgaccttccttgaactctactacaacaacctcactggctctatccccagctcactttcacagctaccaaatttggcttctcttcgtctagaccgtaacaagttcacgggtcatattccgagctcattcggacaattcgttggtgtcattccagatctctacctctcccacaaccagctcacaggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030234 GO:0030312 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0090353 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

208

Amino Acids

23.27

Weight (kDa)

7.59

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028069)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22810
rosa_multiflora	Rmu_sc0003742.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	98
AatII	GACGTC	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	256
AcsI	RAATTY	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	127, 452
AjnI	CCWGG	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	499, 531
AluBI	AGCT	6 cut(s)	13, 358, 489, 502, 561, 616
AluI	AGCT	6 cut(s)	13, 358, 489, 502, 561, 616
Alw21I	GWGCWC	2 cut(s)	50, 563
Alw44I	GTGCAC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	256
ApaLI	GTGCAC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	508
AsiGI	ACCGGT	1 cut(s)	329
AspS9I	GGNCC	2 cut(s)	4, 332
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	3 cut(s)	199, 220, 290
AvaII	GGWCC	2 cut(s)	4, 332
BaeGI	GKGCMC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	563
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	50, 563
BccI	CCATC	2 cut(s)	212, 239
BciT130I	CCWGG	1 cut(s)	181
BcnI	CCSGG	1 cut(s)	413
BfaI	CTAG	1 cut(s)	527
BglII	AGATCT	1 cut(s)	592
Bme1390I	CCNGG	2 cut(s)	181, 413
Bme18I	GGWCC	2 cut(s)	4, 332
BmgT120I	GGNCC	2 cut(s)	4, 332
BmiI	GGNNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	181, 413
BmsI	GCATC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	353, 416
BpuMI	CCSGG	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	478
BseRI	GAGGAG	1 cut(s)	14
BseSI	GKGCMC	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	485
BshFI	GGCC	1 cut(s)	258
BshTI	ACCGGT	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	50, 563
BsiSI	CCGG	3 cut(s)	255, 330, 413
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	50, 563
Bsp143I	GATC	3 cut(s)	199, 244, 592
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	155
BspPI	GGATC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	348
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	478
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	3 cut(s)	199, 244, 592
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	533
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	2 cut(s)	377, 406
BstKTI	GATC	3 cut(s)	202, 247, 595
BstMBI	GATC	3 cut(s)	199, 244, 592
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	179, 411
BstSLI	GKGCMC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	2 cut(s)	4, 332
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	174
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	1 cut(s)	150
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	377, 406
DpnI	GATC	3 cut(s)	201, 246, 594
DpnII	GATC	3 cut(s)	199, 244, 592
DrdI	GACNNNNNNGTC	1 cut(s)	98
DseDI	GACNNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	563
Eco47I	GGWCC	2 cut(s)	4, 332
Eco53kI	GAGCTC	1 cut(s)	561
EcoICRI	GAGCTC	1 cut(s)	561
EcoRII	CCWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	563
FaeI	CATG	1 cut(s)	153
FaiI	YATR	4 cut(s)	151, 289, 326, 552
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	1 cut(s)	149
FblI	GTMKAC	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	563
FspBI	CTAG	1 cut(s)	527
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	3 cut(s)	255, 330, 413
HgaI	GACGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	2 cut(s)	307, 381
HpaII	CCGG	3 cut(s)	255, 330, 413
HphI	GGTGA	3 cut(s)	199, 220, 290
Hpy166II	GTNNAC	3 cut(s)	48, 166, 543
Hpy188I	TCNGA	3 cut(s)	73, 558, 569
Hpy188III	TCNNGA	6 cut(s)	115, 304, 370, 433, 527, 590
Hpy8I	GTNNAC	3 cut(s)	48, 166, 543
Hpy99I	CGWCG	3 cut(s)	164, 167, 194
HpyAV	CCTTC	2 cut(s)	133, 454
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	2 cut(s)	162, 189
HpyCH4V	TGCA	3 cut(s)	48, 81, 109
HpyF3I	CTNAG	2 cut(s)	377, 406
HpySE526I	ACGT	2 cut(s)	162, 189
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	199, 244, 592
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	2 cut(s)	162, 189
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	3 cut(s)	201, 246, 594
MboI	GATC	3 cut(s)	199, 244, 592
MboII	GAAGA	1 cut(s)	512
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	2 cut(s)	50, 563
MluCI	AATT	3 cut(s)	144, 508, 572
MlyI	GAGTC	1 cut(s)	375
MmeI	TCCRAC	1 cut(s)	364
MseI	TTAA	1 cut(s)	143
MspI	CCGG	3 cut(s)	255, 330, 413
MspR9I	CCNGG	2 cut(s)	181, 413
MvaI	CCWGG	1 cut(s)	181
NciI	CCSGG	1 cut(s)	413
NdeII	GATC	3 cut(s)	199, 244, 592
NlaIII	CATG	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	155
NmeAIII	GCCGAG	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	3 cut(s)	300, 529, 573
PfeI	GAWTC	1 cut(s)	307
PfoI	TCCNGGA	1 cut(s)	411
PinAI	ACCGGT	1 cut(s)	329
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	563
Psp6I	CCWGG	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	155
PspPI	GGNCC	2 cut(s)	4, 332
PsuI	RGATCY	1 cut(s)	592
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	563
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	143
Sau3AI	GATC	3 cut(s)	199, 244, 592
Sau96I	GGNCC	2 cut(s)	4, 332
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	2 cut(s)	181, 413
SduI	GDGCHC	2 cut(s)	50, 563
SfaNI	GCATC	1 cut(s)	225
SinI	GGWCC	2 cut(s)	4, 332
SmlI	CTYRAG	3 cut(s)	8, 368, 431
SmoI	CTYRAG	3 cut(s)	8, 368, 431
Sse9I	AATT	3 cut(s)	144, 508, 572
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	527
SstI	GAGCTC	1 cut(s)	563
StyD4I	CCNGG	2 cut(s)	179, 411
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	2 cut(s)	165, 192
TaqI	TCGA	3 cut(s)	165, 192, 294
TasI	AATT	3 cut(s)	144, 508, 572
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	138, 409
TspRI	CASTG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	4, 332
XapI	RAATTY	1 cut(s)	508
XbaI	TCTAGA	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	527
ZraI	GACGTC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.