Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0022252

Physical Location & Seq

Genomic Coordinates Forward (+)

26807809 .. 26809835

Gene Structure 2027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGACGAAGTCGATTACAGAGAGGAAAGCAAATATTTCCGGGAAGCCGAAGCACTCTCTGGACGCGAACCGTGCAGATACGAATTCGAAGAACAAACAGCGACGTAATGCAGCCACCGTGCGCCGCCTCAAGATGTACAAGGTCATGCCAAAACGTGACAGCAAAGGAAACTTGATCAGCAACGAGTTCCAGTCCAAGGAGTTGCCAGACACTCGAATCCAACCCGATCGCCGCTGGTTCGGGAACACTAGGACTATTCACCAGAGTGAGCTTGATGACTTTCGTTATGCCTTCCAGAATCATACGTCTAATAGATACAATATTATTTTGAAGGAGAAGAAATTGCCCATGTCCCTTATTCCTAACCATAACAAGGGGGAGGTGAAGTGGATGGATAATTTAGGGACCTTGTTCGCCATCCATTGTTTGAGAAGGGACAAAGTATACGATTTGGGCATCAACAAGTCATTTGGCAAGGGTTATCTTCTTTCAGTGTTGAGGCCATTTTCCAGATTAAGAAGTGCCAAGCGAGCAATTTCTGTGGGGTTTGTTGGGTATCCCAATGTCGGAAAGTCATCTGTTATCAACACATTGCGAACAAAAAATGTTTGCAAGGTTGCACCTATTCCAGGGGAAACTAAAGTGTGGCAATATATAACACTCACAAAGAGGATCTTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042254 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NGP1NT

Protein Analysis

228

Amino Acids

26.25

Weight (kDa)

10.58

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NGP1NT	PF08153	45 - 128	2e-28	NGP1NT (NUC091) domain
MMR_HSR1	PF01926	181 - 222	6.1e-11	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022252)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33850
rosa_chinensis	RchiOBHm_Chr4g0433481
rosa_samantha	Rh4AG323500 Rh4DG328000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	124, 232
AclWI	GGATC	1 cut(s)	680
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	4 cut(s)	196, 373, 566, 629
AgsI	TTSAA	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	628
AleI	CACNNNNGTG	1 cut(s)	264
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
AlwI	GGATC	1 cut(s)	680
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	251, 394
AsuII	TTCGAA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	405
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	2 cut(s)	385, 425
BciT130I	CCWGG	1 cut(s)	630
BciVI	GTATCC	1 cut(s)	567
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	40
BfaI	CTAG	1 cut(s)	249
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	3 cut(s)	111, 124, 232
BlsI	GCNGC	3 cut(s)	112, 125, 233
Bme1390I	CCNGG	2 cut(s)	40, 630
Bme18I	GGWCC	1 cut(s)	405
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	1 cut(s)	406
BmrFI	CCNGG	2 cut(s)	40, 630
BmsI	GCATC	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	195, 629
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 373, 566, 629
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	590
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	2 cut(s)	195, 629
BseGI	GGATG	2 cut(s)	396, 417
BseLI	CCNNNNNNNGG	4 cut(s)	196, 373, 566, 629
BseMI	GCAATG	1 cut(s)	590
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	1 cut(s)	122
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	65
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	502
BsiEI	CGRYCG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	3 cut(s)	337, 418, 449
BslI	CCNNNNNNNGG	4 cut(s)	196, 373, 566, 629
BsmFI	GGGAC	3 cut(s)	337, 418, 449
BsnI	GGCC	1 cut(s)	502
Bsp119I	TTCGAA	1 cut(s)	86
Bsp1407I	TGTACA	1 cut(s)	135
Bsp143I	GATC	3 cut(s)	174, 226, 672
BspACI	CCGC	2 cut(s)	124, 232
BspANI	GGCC	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	680
BspT104I	TTCGAA	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	590
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	195, 629
BssMI	GATC	3 cut(s)	174, 226, 672
BssNAI	GTATAC	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	195
Bst1107I	GTATAC	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	71, 118
BstAUI	TGTACA	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	531
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	2 cut(s)	396, 417
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	3 cut(s)	177, 229, 675
BstMBI	GATC	3 cut(s)	174, 226, 672
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 530
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	2 cut(s)	38, 628
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
BstZ17I	GTATAC	1 cut(s)	445
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	396, 417
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	531
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	405
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	136
CspCI	CAANNNNNGTGG	2 cut(s)	522, 557
CviAII	CATG	2 cut(s)	145, 349
CviJI	RGCY	4 cut(s)	46, 113, 271, 502
CviKI_1	RGCY	4 cut(s)	46, 113, 271, 502
CviQI	GTAC	1 cut(s)	136
DpnI	GATC	3 cut(s)	176, 228, 674
DpnII	GATC	3 cut(s)	174, 226, 672
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	405
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	148, 352
FaiI	YATR	8 cut(s)	146, 288, 303, 350, 369, 445, 654, 656
FalI	AAGNNNNNCTT	1 cut(s)	659
FaqI	GGGAC	3 cut(s)	337, 418, 449
FatI	CATG	2 cut(s)	144, 348
FbaI	TGATCA	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	3 cut(s)	111, 124, 232
FokI	GGATG	2 cut(s)	403, 404
Fsp4HI	GCNGC	3 cut(s)	111, 124, 232
FspBI	CTAG	1 cut(s)	249
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	3 cut(s)	111, 124, 232
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	148, 352
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	216, 298
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	2 cut(s)	251, 394
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	1 cut(s)	569
Hpy188III	TCNNGA	5 cut(s)	59, 130, 241, 295, 510
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	3 cut(s)	301, 325, 426
HpyCH4III	ACNGT	2 cut(s)	71, 118
HpyCH4IV	ACGT	3 cut(s)	103, 154, 305
HpyCH4V	TGCA	4 cut(s)	74, 110, 612, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 530
HpySE526I	ACGT	3 cut(s)	103, 154, 305
Hsp92II	CATG	2 cut(s)	148, 352
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	174, 226, 672
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	3 cut(s)	103, 154, 305
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	3 cut(s)	176, 228, 674
MboI	GATC	3 cut(s)	174, 226, 672
MboII	GAAGA	4 cut(s)	100, 349, 476, 667
MflI	RGATCY	1 cut(s)	672
MluCI	AATT	4 cut(s)	82, 341, 397, 534
MmeI	TCCRAC	2 cut(s)	244, 547
MnlI	CCTC	5 cut(s)	15, 137, 373, 492, 663
MseI	TTAA	1 cut(s)	515
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	40, 630
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	2 cut(s)	71, 530
NciI	CCSGG	1 cut(s)	40
NdeII	GATC	3 cut(s)	174, 226, 672
NlaIII	CATG	2 cut(s)	148, 352
NlaIV	GGNNCC	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	155
NspV	TTCGAA	1 cut(s)	86
OliI	CACNNNNGTG	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	216, 298
PflFI	GACNNNGTC	1 cut(s)	7
PfoI	TCCNGGA	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	112, 125, 233
Ple19I	CGATCG	1 cut(s)	229
PpuMI	RGGWCCY	1 cut(s)	405
Psp5II	RGGWCCY	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	405
PspPPI	RGGWCCY	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	672
PsyI	GACNNNGTC	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	229
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	515
SatI	GCNGC	3 cut(s)	111, 124, 232
Sau3AI	GATC	3 cut(s)	174, 226, 672
Sau96I	GGNCC	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	40, 630
SetI	ASST	9 cut(s)	106, 144, 157, 273, 308, 384, 410, 618, 625
SfaNI	GCATC	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	86
SinI	GGWCC	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	4 cut(s)	82, 341, 397, 534
SsiI	CCGC	2 cut(s)	124, 232
SspI	AATATT	2 cut(s)	34, 322
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	38, 628
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	71, 118
TaiI	ACGT	3 cut(s)	106, 157, 308
TaqI	TCGA	3 cut(s)	11, 86, 214
TasI	AATT	4 cut(s)	82, 341, 397, 534
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	2 cut(s)	126, 234
TfiI	GAWTC	2 cut(s)	216, 298
Tru1I	TTAA	1 cut(s)	515
Tru9I	TTAA	1 cut(s)	515
TscAI	CASTG	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	155
TspRI	CASTG	1 cut(s)	498
Tth111I	GACNNNGTC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	405
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	1 cut(s)	82
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.