Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0022252

Physical Location & Seq

Genomic Coordinates Forward (+)

55159459 .. 55159824

Gene Structure 366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG328000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACGAAGAAGACAGAGAGGAAAGTGAACGTTTCCGGGAGGCCGAAGCACTCTCTGGACGCGAACCGTACCGATGGGAAGAACAAAGAGCAGCGTAGTGCGGCCACCGTGCGCCGCCTCAAGATGTACAAGGTCAGGCCCAAGCGTGACCGCAAGGGCAAGTTCATCAGCAACGAATTCCAGTCCAAGGAGTTGCCCAACACTCGAATCCAACCCGATCGCCGCTGGTTCGGGAATACTAGGGTTGTGGGCCAGAAGGAGCTTGAAGTCTTTCGTGACGAGCTCGAGAATCACATGTCTAATAGATACAATGTGATTTTGAAGGAGAAGAAATTGCCCATGTCTCTTCTTAATGTCTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0022613 GO:0031974 GO:0031981 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0042254 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NGP1NT

Protein Analysis

121

Amino Acids

14.33

Weight (kDa)

10.74

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NGP1NT	PF08153	42 - 118	3e-31	NGP1NT (NUC091) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022252)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g33850
rosa_chinensis	RchiOBHm_Chr4g0433481
rosa_samantha	Rh4AG323500 Rh4DG328000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	101, 115, 151, 223
AclI	AACGTT	1 cut(s)	30
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	176
AfaI	GTAC	2 cut(s)	70, 128
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	266, 322
AluBI	AGCT	2 cut(s)	262, 283
AluI	AGCT	2 cut(s)	262, 283
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	2 cut(s)	348, 361
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	4 cut(s)	41, 102, 137, 250
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	114
AspS9I	GGNCC	2 cut(s)	138, 250
AsuC2I	CCSGG	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	68
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	348, 361
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	4 cut(s)	92, 102, 115, 223
BlsI	GCNGC	4 cut(s)	93, 103, 116, 224
Bme1390I	CCNGG	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	284
BmgT120I	GGNCC	2 cut(s)	138, 250
BmrFI	CCNGG	1 cut(s)	37
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	62
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	4 cut(s)	43, 104, 139, 252
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	2 cut(s)	348, 361
BsnI	GGCC	4 cut(s)	43, 104, 139, 252
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	4 cut(s)	101, 115, 151, 223
BspANI	GGCC	4 cut(s)	43, 104, 139, 252
BspFNI	CGCG	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	68, 109
Bst6I	CTCTTC	1 cut(s)	351
BstAUI	TGTACA	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	2 cut(s)	348, 361
BstMBI	GATC	1 cut(s)	217
BstMCI	CGRYCG	1 cut(s)	220
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	35
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	17
BsuRI	GGCC	4 cut(s)	43, 104, 139, 252
CfoI	GCGC	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	138, 250
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	69, 127
CviAII	CATG	2 cut(s)	295, 340
CviJI	RGCY	6 cut(s)	43, 104, 139, 252, 262, 283
CviKI_1	RGCY	6 cut(s)	43, 104, 139, 252, 262, 283
CviQI	GTAC	2 cut(s)	69, 127
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	285
Eco53kI	GAGCTC	1 cut(s)	283
Eco88I	CYCGRG	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	298, 343
FaiI	YATR	2 cut(s)	296, 341
FatI	CATG	2 cut(s)	294, 339
Fnu4HI	GCNGC	4 cut(s)	92, 102, 115, 223
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	4 cut(s)	92, 102, 115, 223
FspBI	CTAG	1 cut(s)	240
GlaI	GCGC	1 cut(s)	113
GluI	GCNGC	4 cut(s)	92, 102, 115, 223
HaeIII	GGCC	4 cut(s)	43, 104, 139, 252
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	298, 343
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	2 cut(s)	207, 289
HpaII	CCGG	1 cut(s)	36
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188III	TCNNGA	5 cut(s)	56, 121, 232, 275, 286
Hpy8I	GTNNAC	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	250, 316
HpyCH4III	ACNGT	2 cut(s)	68, 109
HpyCH4IV	ACGT	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	298, 343
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	6 cut(s)	41, 49, 121, 194, 211, 266
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	146, 275
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	6 cut(s)	19, 22, 91, 338, 340, 351
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	2 cut(s)	176, 332
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	12, 33, 128
MroXI	GAANNNNTTC	1 cut(s)	270
MseI	TTAA	2 cut(s)	351, 364
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	37
MvnI	CGCG	1 cut(s)	62
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	2 cut(s)	298, 343
NmuCI	GTSAC	2 cut(s)	146, 275
NspI	RCATGY	1 cut(s)	298
PaeR7I	CTCGAG	1 cut(s)	284
PciI	ACATGT	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	207, 289
PfoI	TCCNGGA	1 cut(s)	35
PkrI	GCNGC	4 cut(s)	93, 103, 116, 224
Ple19I	CGATCG	1 cut(s)	220
PscI	ACATGT	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	285
Psp1406I	AACGTT	1 cut(s)	30
PspPI	GGNCC	2 cut(s)	138, 250
PvuI	CGATCG	1 cut(s)	220
RsaI	GTAC	2 cut(s)	70, 128
RsaNI	GTAC	2 cut(s)	69, 127
SacI	GAGCTC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	351, 364
SatI	GCNGC	4 cut(s)	92, 102, 115, 223
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	2 cut(s)	138, 250
ScrFI	CCNGG	1 cut(s)	37
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	4 cut(s)	33, 135, 264, 285
Sfr274I	CTCGAG	1 cut(s)	284
SlaI	CTCGAG	1 cut(s)	284
SmlI	CTYRAG	2 cut(s)	119, 284
SmoI	CTYRAG	2 cut(s)	119, 284
Sse9I	AATT	2 cut(s)	176, 332
SsiI	CCGC	4 cut(s)	101, 115, 151, 223
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	68, 109
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	205, 285
TasI	AATT	2 cut(s)	176, 332
TatI	WGTACW	1 cut(s)	126
TauI	GCSGC	3 cut(s)	104, 117, 225
TfiI	GAWTC	2 cut(s)	207, 289
Tru1I	TTAA	2 cut(s)	351, 364
Tru9I	TTAA	2 cut(s)	351, 364
TseFI	GTSAC	2 cut(s)	146, 275
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	2 cut(s)	146, 275
TspDTI	ATGAA	1 cut(s)	154
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	298
XhoI	CTCGAG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	270
XspI	CTAG	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.