FvH4_6g45201

DUF21 domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
34738834 .. 34740870
2037 bp
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UTR
Exon/CDS
Intron
FvH4_6g45201.t1

Sequence Viewer

Length: 435 bp
ATGAAGGATATCGAGATCGCTCTCGATTCTATCTCACAGAGGAAGAGCCAGAAGAGTCTAAGCGAGATGACTGACAATTCAGTGAAAGAAGTGAGAGTGGACATTGATGGTGAAAAGCCTCTTCAGGAGAAGACTTTGAAGAGCAAAAGATCACTGCATAAGTGGAAGAGTTTCTCTAATAGTGGACATAATTCTTTCAAAAGTGAGTCCAGAAACAAGAAATGGTCGAAGGAGATGTATTCAGACATCCTTCAGATGGACGATGAAGCACTCCCGAAGCTCCCCGAAGAGGAAGAGGAAGTAGTTGTTGGCATTATAACAATGGAAGACGTTATCGAAGAGATTTTACAGGAGGAAATATTTGATGAAACTAAAGCTGACACGAGGAGCAAAAAATATGACATGAGGTGCAAAAAAATATCTACAGGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

16.71

Weight (kDa)

5.25

Isoelectric Point (pI)

69.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024192)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g45201
rosa_multiflora Rmu_sc0012516.1_g000001 Rmu_ssc0000437.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 317
AcuI CTGAAG 2 cut(s) 107, 236
AfiI CCNNNNNNNGG 2 cut(s) 256, 289
AgsI TTSAA 2 cut(s) 139, 199
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 2 cut(s) 280, 377
AluI AGCT 2 cut(s) 280, 377
Asp700I GAANNNNTTC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 122
BarI GAAGNNNNNNTAC 2 cut(s) 330, 362
BauI CACGAG 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 137, 333
BccI CCATC 2 cut(s) 101, 250
BfmI CTRYAG 1 cut(s) 423
BpiI GAAGAC 2 cut(s) 137, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 289
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 256, 289
BseRI GAGGAG 1 cut(s) 400
BslI CCNNNNNNNGG 2 cut(s) 256, 289
Bsp143I GATC 2 cut(s) 15, 149
BspQI GCTCTTC 2 cut(s) 38, 134
BssMI GATC 2 cut(s) 15, 149
BssSI CACGAG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 382
Bst6I CTCTTC 8 cut(s) 38, 47, 126, 134, 161, 282, 288, 333
BstDEI CTNAG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 2 cut(s) 18, 152
BstMBI GATC 2 cut(s) 15, 149
BstSFI CTRYAG 1 cut(s) 423
BstV2I GAAGAC 2 cut(s) 137, 333
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 2 cut(s) 87, 152
CviAII CATG 1 cut(s) 403
CviJI RGCY 4 cut(s) 48, 118, 280, 377
CviKI_1 RGCY 4 cut(s) 48, 118, 280, 377
DdeI CTNAG 1 cut(s) 59
DpnI GATC 2 cut(s) 17, 151
DpnII GATC 2 cut(s) 15, 149
Eam1104I CTCTTC 8 cut(s) 38, 47, 126, 134, 161, 282, 288, 333
EarI CTCTTC 8 cut(s) 38, 47, 126, 134, 161, 282, 288, 333
Eco32I GATATC 1 cut(s) 10
Eco57I CTGAAG 2 cut(s) 107, 236
EcoRV GATATC 1 cut(s) 10
FaeI CATG 1 cut(s) 406
FaiI YATR 5 cut(s) 159, 189, 317, 399, 404
FatI CATG 1 cut(s) 402
FokI GGATG 1 cut(s) 233
Hin1II CATG 1 cut(s) 406
HinfI GANTC 3 cut(s) 26, 55, 206
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 100, 185
Hpy188I TCNGA 2 cut(s) 244, 255
Hpy188III TCNNGA 5 cut(s) 13, 23, 125, 210, 274
Hpy8I GTNNAC 2 cut(s) 100, 185
HpyAV CCTTC 2 cut(s) 223, 260
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 2 cut(s) 157, 411
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 1 cut(s) 406
Kzo9I GATC 2 cut(s) 15, 149
LguI GCTCTTC 2 cut(s) 38, 134
LmnI GCTCC 2 cut(s) 285, 387
LpnPI CCDG 5 cut(s) 62, 110, 223, 335, 411
MaeII ACGT 1 cut(s) 330
MalI GATC 2 cut(s) 17, 151
MboI GATC 2 cut(s) 15, 149
MluCI AATT 2 cut(s) 76, 190
MlyI GAGTC 2 cut(s) 64, 215
MnlI CCTC 7 cut(s) 33, 129, 283, 289, 346, 378, 399
MroXI GAANNNNTTC 1 cut(s) 170
NdeII GATC 2 cut(s) 15, 149
NlaIII CATG 1 cut(s) 406
PciSI GCTCTTC 2 cut(s) 38, 134
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 26
PleI GAGTC 2 cut(s) 63, 214
PpsI GAGTC 2 cut(s) 63, 214
PsiI TTATAA 1 cut(s) 317
SapI GCTCTTC 2 cut(s) 38, 134
Sau3AI GATC 2 cut(s) 15, 149
SchI GAGTC 2 cut(s) 64, 215
SetI ASST 4 cut(s) 282, 333, 379, 410
SfcI CTRYAG 1 cut(s) 423
Sse9I AATT 2 cut(s) 76, 190
SspI AATATT 1 cut(s) 360
TaiI ACGT 1 cut(s) 333
TaqI TCGA 4 cut(s) 12, 24, 227, 336
TasI AATT 2 cut(s) 76, 190
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 2 cut(s) 87, 159
TspDTI ATGAA 3 cut(s) 17, 279, 381
TspRI CASTG 2 cut(s) 87, 159
XmnI GAANNNNTTC 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.