Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012516.1

Orthogroup ID

OG0024192

Physical Location & Seq

Genomic Coordinates Reverse (-)

1480 .. 2082

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggctattgttataagacggtgcaatactgaggagcagcccaatggcaatacagctgacagtccagtgaaagaagtgaaagtggacattgatggtgaaaagcctcctcaggagaagattttgaagagcaaaagatcactgaacaaatggaagagctttcctaacagtgggaatatttcacagaggagtgggtccagaagcaagaaatggtccaaggacatgtattcagacatccttgagatagatagtgaagcacttccaaagctcccagaagaggaagtggctgttggcattataacaatggaagacgttatcgaagagcttttacaggaggagatatttgatgaaactgatcatcagtatgaggactcatactcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF21

Protein Analysis

126

Amino Acids

14.4

Weight (kDa)

4.62

Isoelectric Point (pI)

82.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024192)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g45201
rosa_multiflora	Rmu_sc0012516.1_g000001 Rmu_ssc0000437.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	14, 296
AfiI	CCNNNNNNNGG	2 cut(s)	167, 274
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	4 cut(s)	56, 156, 265, 322
AluI	AGCT	4 cut(s)	56, 156, 265, 322
ApeKI	GCWGC	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	255
AspS9I	GGNCC	2 cut(s)	192, 210
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	2 cut(s)	192, 210
AxyI	CCTNAGG	1 cut(s)	108
BarI	GAAGNNNNNNTAC	2 cut(s)	309, 341
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	352
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme18I	GGWCC	2 cut(s)	192, 210
BmgT120I	GGNCC	2 cut(s)	192, 210
BmiI	GGNNCC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 274
Bse1I	ACTGG	1 cut(s)	65
Bse21I	CCTNAGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	2 cut(s)	167, 274
BseMII	CTCAG	2 cut(s)	21, 122
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	4 cut(s)	47, 96, 199, 347
BseXI	GCAGC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	167, 274
Bsp143I	GATC	2 cut(s)	134, 352
BspCNI	CTCAG	2 cut(s)	22, 121
BspLI	GGNNCC	1 cut(s)	193
BspQI	GCTCTTC	3 cut(s)	119, 146, 312
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	134, 352
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	3 cut(s)	21, 62, 167
Bst6I	CTCTTC	4 cut(s)	119, 146, 267, 312
BstDEI	CTNAG	2 cut(s)	30, 108
BstF5I	GGATG	1 cut(s)	231
BstKTI	GATC	2 cut(s)	137, 355
BstMBI	GATC	2 cut(s)	134, 352
BstNSI	RCATGY	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	312
Bsu36I	CCTNAGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	231
BtsIMutI	CAGTG	3 cut(s)	72, 137, 172
Cfr13I	GGNCC	2 cut(s)	192, 210
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	8 cut(s)	5, 40, 56, 103, 156, 265, 284, 322
CviKI_1	RGCY	8 cut(s)	5, 40, 56, 103, 156, 265, 284, 322
DdeI	CTNAG	2 cut(s)	30, 108
DpnI	GATC	2 cut(s)	136, 354
DpnII	GATC	2 cut(s)	134, 352
Eam1104I	CTCTTC	4 cut(s)	119, 146, 267, 312
EarI	CTCTTC	4 cut(s)	119, 146, 267, 312
Eco130I	CCWWGG	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	192, 210
Eco81I	CCTNAGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	223
FaiI	YATR	6 cut(s)	14, 221, 296, 363, 373, 379
FatI	CATG	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	38
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	1 cut(s)	368
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	2 cut(s)	110, 195
Hpy8I	GTNNAC	1 cut(s)	85
HpyCH4III	ACNGT	3 cut(s)	21, 62, 167
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	24
HpyF3I	CTNAG	2 cut(s)	30, 108
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	134, 352
LguI	GCTCTTC	3 cut(s)	119, 146, 312
LmnI	GCTCC	2 cut(s)	34, 270
LpnPI	CCDG	5 cut(s)	78, 95, 208, 282, 314
Lsp1109I	GCAGC	1 cut(s)	49
MaeII	ACGT	1 cut(s)	309
MalI	GATC	2 cut(s)	136, 354
MboI	GATC	2 cut(s)	134, 352
MboII	GAAGA	6 cut(s)	127, 136, 163, 284, 317, 329
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	7 cut(s)	25, 114, 117, 177, 268, 325, 358
MroXI	GAANNNNTTC	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	56
NdeII	GATC	2 cut(s)	134, 352
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	193
NspI	RCATGY	1 cut(s)	223
PciI	ACATGT	1 cut(s)	219
PciSI	GCTCTTC	3 cut(s)	119, 146, 312
PdmI	GAANNNNTTC	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	39
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PscI	ACATGT	1 cut(s)	219
PsiI	TTATAA	2 cut(s)	14, 296
PspN4I	GGNNCC	1 cut(s)	193
PspPI	GGNCC	2 cut(s)	192, 210
PvuII	CAGCTG	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	360
SapI	GCTCTTC	3 cut(s)	119, 146, 312
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	2 cut(s)	134, 352
Sau96I	GGNCC	2 cut(s)	192, 210
SchI	GAGTC	1 cut(s)	362
SetI	ASST	5 cut(s)	58, 158, 267, 312, 324
SgeI	CNNG	9 cut(s)	77, 122, 207, 214, 226, 232, 248, 281, 341
SinI	GGWCC	2 cut(s)	192, 210
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SspI	AATATT	1 cut(s)	175
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	3 cut(s)	21, 62, 167
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	315
TscAI	CASTG	3 cut(s)	72, 144, 172
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	360
TspRI	CASTG	3 cut(s)	72, 144, 172
VpaK11BI	GGWCC	2 cut(s)	192, 210
XceI	RCATGY	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.