Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0028115

Physical Location & Seq

Genomic Coordinates Forward (+)

5191218 .. 5192344

Gene Structure 1127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g04731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTGAGGGATTTGATTGAGAAGTGGAGGGTTGGTGGTGGTGGAAATGGTGTTAGAGTTCCAGCAAAAGAAGTGCAGTGTGATACTGTGATATATGATCTTTCATGCAATCTTGCAAGGGTTTTGGAATTTCGTACTCATGAGATACCTCAAGCATTTCTATCTGGGGCTGATACAAACCTTCGAAGGTTGACTGAGCTGATTTTCTTTATTCTGAACCACATCACTTCAGCAGAAGACACCGAGTTTTTTGACTTGTCTCTGAGACGACATGGTCAATCTTTAGAAAAAGTTAACCGAGGGATGGTATTGGCACCTCTGGTGGGTATTATCTTGAACCTGATAAATGCTAGTGAACAGATGGAATGCAGGGAGCACAATGATGTTGTGAGCATATTTGCAAGCATGGGGTGCCTTGACAGTTTTAATTGCAGATTTCAGTACCTATTGGATTACAACTGGGTTAGCTCCCGTAACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0060154 GO:0065007 GO:0070647 GO:0071704 GO:0098586 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPRY Ufd2P_core zf-C3HC4_3

Protein Analysis

161

Amino Acids

18.24

Weight (kDa)

5.54

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_RNF123	PF25576	27 - 157	1.2e-52	RNF123-like, TPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0028115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04731
pyrus_communis	pycom01g04840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	273
AccB1I	GGYRCC	2 cut(s)	313, 411
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	2 cut(s)	136, 443
AfiI	CCNNNNNNNGG	2 cut(s)	304, 323
AgsI	TTSAA	1 cut(s)	337
AluBI	AGCT	2 cut(s)	199, 468
AluI	AGCT	2 cut(s)	199, 468
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	2 cut(s)	259, 264
ApoI	RAATTY	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	184
BanI	GGYRCC	2 cut(s)	313, 411
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	378
BccI	CCATC	2 cut(s)	298, 355
BcoDI	GTCTC	2 cut(s)	259, 264
BfaI	CTAG	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	315, 413
BmrI	ACTGGG	1 cut(s)	469
BmuI	ACTGGG	1 cut(s)	469
BpiI	GAAGAC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	304, 323
Bse1I	ACTGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	304, 323
BseMII	CTCAG	2 cut(s)	186, 254
BseNI	ACTGG	1 cut(s)	464
BsgI	GTGCAG	1 cut(s)	95
BshNI	GGYRCC	2 cut(s)	313, 411
BsiHKAI	GWGCWC	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	304, 323
BsmAI	GTCTC	2 cut(s)	259, 264
BsmBI	CGTCTC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	187, 255
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	2 cut(s)	315, 413
BspT104I	TTCGAA	1 cut(s)	184
BspT107I	GGYRCC	2 cut(s)	313, 411
BsrI	ACTGG	1 cut(s)	464
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	1 cut(s)	97
Bst4CI	ACNGT	2 cut(s)	88, 422
BstAPI	GCANNNNNTGC	1 cut(s)	411
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	195, 263
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	2 cut(s)	259, 264
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstV2I	GAAGAC	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	83
Cac8I	GCNNGC	1 cut(s)	403
CciI	TCATGA	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	135, 442
CviAII	CATG	4 cut(s)	105, 140, 272, 406
CviJI	RGCY	3 cut(s)	170, 199, 468
CviKI_1	RGCY	3 cut(s)	170, 199, 468
CviQI	GTAC	2 cut(s)	135, 442
DdeI	CTNAG	2 cut(s)	195, 263
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	4 cut(s)	108, 143, 275, 409
FaiI	YATR	7 cut(s)	94, 96, 106, 141, 273, 395, 407
FatI	CATG	4 cut(s)	104, 139, 271, 405
FokI	GGATG	1 cut(s)	316
FspBI	CTAG	1 cut(s)	351
Hin1II	CATG	4 cut(s)	108, 143, 275, 409
HincII	GTYRAC	2 cut(s)	192, 295
HindII	GTYRAC	2 cut(s)	192, 295
HpaI	GTTAAC	1 cut(s)	295
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	192, 295, 356
Hpy188I	TCNGA	2 cut(s)	216, 264
Hpy188III	TCNNGA	2 cut(s)	140, 334
Hpy8I	GTNNAC	3 cut(s)	192, 295, 356
HpyAV	CCTTC	2 cut(s)	180, 191
HpyCH4III	ACNGT	2 cut(s)	88, 422
HpyCH4V	TGCA	6 cut(s)	76, 108, 116, 369, 401, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
HpyF3I	CTNAG	2 cut(s)	195, 263
Hsp92II	CATG	4 cut(s)	108, 143, 275, 409
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	97
LmnI	GCTCC	2 cut(s)	373, 473
LpnPI	CCDG	6 cut(s)	75, 150, 305, 353, 355, 445
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	2 cut(s)	128, 427
MnlI	CCTC	4 cut(s)	21, 159, 293, 327
MseI	TTAA	2 cut(s)	294, 426
MslI	CAYNNNNRTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	411
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	4 cut(s)	108, 143, 275, 409
NlaIV	GGNNCC	2 cut(s)	315, 413
NspV	TTCGAA	1 cut(s)	184
PagI	TCATGA	1 cut(s)	139
PctI	GAATGC	1 cut(s)	371
PflFI	GACNNNGTC	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	315, 413
PsyI	GACNNNGTC	1 cut(s)	273
RsaI	GTAC	2 cut(s)	136, 443
RsaNI	GTAC	2 cut(s)	135, 442
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	294, 426
Sau3AI	GATC	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	9 cut(s)	151, 183, 191, 201, 319, 342, 447, 470, 480
SfuI	TTCGAA	1 cut(s)	184
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	128, 427
SspMI	CTAG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	88, 422
TaqI	TCGA	1 cut(s)	184
TasI	AATT	2 cut(s)	128, 427
Tru1I	TTAA	2 cut(s)	294, 426
Tru9I	TTAA	2 cut(s)	294, 426
TscAI	CASTG	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	83
Tth111I	GACNNNGTC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.