Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0028115

Physical Location & Seq

Genomic Coordinates Forward (+)

4117592 .. 4120688

Gene Structure 3097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGACTGAATTCTCAGTCTCTGTTAGAGAAATGCAAGAGAAGTACCAGGTATTAGAGTTCCAGCAAAAGAAATGCAGTGTCATATTTGATCTTTCATGCAATTTGACAAGGGTTTTGGAGTTCAGTACCCACGCCATACCTCAAGCATTTCTGTCTGGAGCTGAAACAAACCTTCGAAGGTTGACGGAGTTGATTGTCTTTATTCTGAACCACATAACTTCAGCAGAAGATGCTGAATTTTTTGACTTGTCACTGAGACGACATGGCCAATCTTTAGAAAAAGTAAACCGAGGGATGATATTGGCACCCCTTGTAGGCATTATCTTGAACTTGTTAAATGCCGGCGAGCATATGGAATGCAGGGAGTACAATGATGTTGTGAGCATCTTTGCAAACATGGGTTGCCTTGACAGTTTTCATTGCAGATTCCAGTATCTAGTGGATTACAACTGGGATGGAACCTGTAGAGGCGATGCGTATCTTGTAAAACTTGCCCAGCTAGAGAATTTTCTGAGCCTTCTCAGCCAGAGCCAATCACAAGAAAATACAATATGCAGGGGTGAAACGGATGGGGATGATGGCCTATGCTGCATCTGTTACGCCTGTGAAGCAGATGCCCAGTTTTCACCTAGTTCGCACAGGTCTTGTTATGTTTGCATAACCAGGCATCTTTTGAATTGCCACAGATGCTTTTTTTGCAATGCAACAGTTGTGGACGTTGTCCTGATCAGTGAGAAGACGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0060154 GO:0065007 GO:0070647 GO:0071704 GO:0098586 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPRY Ufd2P_core zf-C3HC4_3

Protein Analysis

249

Amino Acids

28.12

Weight (kDa)

5.14

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_RNF123	PF25576	1 - 179	4.9e-73	RNF123-like, TPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028115)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g04731
pyrus_communis	pycom01g04840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	3 cut(s)	8, 236, 505
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	44, 127, 368
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	328, 676
AjnI	CCWGG	2 cut(s)	45, 662
AluBI	AGCT	2 cut(s)	161, 499
AluI	AGCT	2 cut(s)	161, 499
Alw26I	GTCTC	2 cut(s)	22, 250
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	2 cut(s)	265, 580
ApeKI	GCWGC	1 cut(s)	588
ApoI	RAATTY	3 cut(s)	8, 236, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
AsuHPI	GGTGA	2 cut(s)	572, 618
AsuII	TTCGAA	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	743
BbvI	GCAGC	1 cut(s)	575
BccI	CCATC	3 cut(s)	449, 563, 572
BciT130I	CCWGG	2 cut(s)	47, 664
BclI	TGATCA	1 cut(s)	726
BcoDI	GTCTC	2 cut(s)	22, 250
BfaI	CTAG	3 cut(s)	437, 500, 630
BfmI	CTRYAG	1 cut(s)	463
BisI	GCNGC	1 cut(s)	589
BlsI	GCNGC	1 cut(s)	590
Bme1390I	CCNGG	2 cut(s)	47, 664
BmiI	GGNNCC	2 cut(s)	306, 460
BmrFI	CCNGG	2 cut(s)	47, 664
BmrI	ACTGGG	2 cut(s)	460, 613
BmsI	GCATC	7 cut(s)	220, 393, 463, 600, 604, 676, 677
BmuI	ACTGGG	2 cut(s)	460, 613
BpiI	GAAGAC	1 cut(s)	743
BpmI	CTGGAG	1 cut(s)	177
Bpu14I	TTCGAA	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	3 cut(s)	430, 455, 619
Bse3DI	GCAATG	2 cut(s)	418, 706
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	2 cut(s)	47, 664
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	4 cut(s)	300, 460, 574, 580
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	2 cut(s)	418, 706
BseMII	CTCAG	4 cut(s)	27, 245, 503, 535
BseNI	ACTGG	3 cut(s)	430, 455, 619
BseXI	GCAGC	1 cut(s)	575
BseYI	CCCAGC	1 cut(s)	495
BshFI	GGCC	2 cut(s)	267, 582
BshNI	GGYRCC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	2 cut(s)	22, 250
BsmBI	CGTCTC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	2 cut(s)	267, 582
Bsp119I	TTCGAA	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	88, 726
BspANI	GGCC	2 cut(s)	267, 582
BspCNI	CTCAG	4 cut(s)	26, 246, 504, 534
BspLI	GGNNCC	2 cut(s)	306, 460
BspT104I	TTCGAA	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	418, 706
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	3 cut(s)	430, 455, 619
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	88, 726
Bst2UI	CCWGG	2 cut(s)	47, 664
Bst4CI	ACNGT	2 cut(s)	413, 709
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	343, 347
BstDEI	CTNAG	4 cut(s)	13, 254, 512, 521
BstF5I	GGATG	4 cut(s)	300, 460, 574, 580
BstKTI	GATC	2 cut(s)	91, 729
BstMAI	GTCTC	2 cut(s)	22, 250
BstMBI	GATC	2 cut(s)	88, 726
BstMWI	GCNNNNNNNGC	6 cut(s)	230, 522, 588, 608, 687, 696
BstNI	CCWGG	2 cut(s)	47, 664
BstSCI	CCNGG	2 cut(s)	45, 662
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	1 cut(s)	575
BstV2I	GAAGAC	1 cut(s)	743
BsuRI	GGCC	2 cut(s)	267, 582
BtgZI	GCGATG	1 cut(s)	486
BtsCI	GGATG	4 cut(s)	300, 460, 574, 580
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	3 cut(s)	82, 251, 736
Cac8I	GCNNGC	2 cut(s)	343, 347
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	341
CsiI	ACCWGGT	1 cut(s)	45
Csp6I	GTAC	3 cut(s)	43, 126, 367
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	3 cut(s)	96, 263, 397
CviJI	RGCY	7 cut(s)	161, 267, 499, 516, 525, 531, 582
CviKI_1	RGCY	7 cut(s)	161, 267, 499, 516, 525, 531, 582
CviQI	GTAC	3 cut(s)	43, 126, 367
DdeI	CTNAG	4 cut(s)	13, 254, 512, 521
DpnI	GATC	2 cut(s)	90, 728
DpnII	GATC	2 cut(s)	88, 726
EaeI	YGGCCR	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	45, 662
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	3 cut(s)	99, 266, 400
FatI	CATG	3 cut(s)	95, 262, 396
FauNDI	CATATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	1 cut(s)	589
FokI	GGATG	4 cut(s)	307, 467, 581, 587
Fsp4HI	GCNGC	1 cut(s)	589
FspBI	CTAG	3 cut(s)	437, 500, 630
GluI	GCNGC	1 cut(s)	589
GsaI	CCCAGC	1 cut(s)	499
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	267, 582
HapII	CCGG	1 cut(s)	342
Hin1II	CATG	3 cut(s)	99, 266, 400
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	2 cut(s)	572, 618
Hpy166II	GTNNAC	3 cut(s)	183, 286, 715
Hpy188I	TCNGA	2 cut(s)	207, 513
Hpy188III	TCNNGA	3 cut(s)	156, 325, 724
Hpy8I	GTNNAC	3 cut(s)	183, 286, 715
HpyAV	CCTTC	3 cut(s)	171, 182, 527
HpyCH4III	ACNGT	2 cut(s)	413, 709
HpyCH4IV	ACGT	1 cut(s)	717
HpyF10VI	GCNNNNNNNGC	6 cut(s)	230, 522, 588, 608, 687, 696
HpyF3I	CTNAG	4 cut(s)	13, 254, 512, 521
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	3 cut(s)	99, 266, 400
KroI	GCCGGC	1 cut(s)	341
KroNI	GCCGGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	2 cut(s)	88, 726
LmnI	GCTCC	1 cut(s)	158
Lsp1109I	GCAGC	1 cut(s)	575
LweI	GCATC	7 cut(s)	220, 393, 463, 600, 604, 676, 677
MabI	ACCWGGT	1 cut(s)	45
MaeI	CTAG	3 cut(s)	437, 500, 630
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	2 cut(s)	249, 596
MalI	GATC	2 cut(s)	90, 728
MboI	GATC	2 cut(s)	88, 726
MboII	GAAGA	1 cut(s)	239
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	5 cut(s)	8, 100, 236, 505, 676
MluNI	TGGCCA	1 cut(s)	267
MnlI	CCTC	3 cut(s)	150, 284, 461
Mox20I	TGGCCA	1 cut(s)	267
MroNI	GCCGGC	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	1 cut(s)	335
Msp20I	TGGCCA	1 cut(s)	267
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	47, 664
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	2 cut(s)	47, 664
MwoI	GCNNNNNNNGC	6 cut(s)	230, 522, 588, 608, 687, 696
NaeI	GCCGGC	1 cut(s)	343
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	2 cut(s)	88, 726
NgoMIV	GCCGGC	1 cut(s)	341
NlaIII	CATG	3 cut(s)	99, 266, 400
NlaIV	GGNNCC	2 cut(s)	306, 460
NmuCI	GTSAC	1 cut(s)	249
NspV	TTCGAA	1 cut(s)	175
PctI	GAATGC	1 cut(s)	362
PdiI	GCCGGC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	426
PflFI	GACNNNGTC	1 cut(s)	719
PkrI	GCNGC	1 cut(s)	590
Psp6I	CCWGG	2 cut(s)	45, 662
PspFI	CCCAGC	1 cut(s)	495
PspGI	CCWGG	2 cut(s)	45, 662
PspN4I	GGNNCC	2 cut(s)	306, 460
PstNI	CAGNNNCTG	1 cut(s)	20
PsyI	GACNNNGTC	1 cut(s)	719
RsaI	GTAC	3 cut(s)	44, 127, 368
RsaNI	GTAC	3 cut(s)	43, 126, 367
SaqAI	TTAA	1 cut(s)	335
SatI	GCNGC	1 cut(s)	589
Sau3AI	GATC	2 cut(s)	88, 726
ScrFI	CCNGG	2 cut(s)	47, 664
SexAI	ACCWGGT	1 cut(s)	45
SfaNI	GCATC	7 cut(s)	220, 393, 463, 600, 604, 676, 677
SfcI	CTRYAG	1 cut(s)	463
SfuI	TTCGAA	1 cut(s)	175
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
Sse9I	AATT	5 cut(s)	8, 100, 236, 505, 676
SspMI	CTAG	3 cut(s)	437, 500, 630
StyD4I	CCNGG	2 cut(s)	45, 662
TaaI	ACNGT	2 cut(s)	413, 709
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	1 cut(s)	175
TasI	AATT	5 cut(s)	8, 100, 236, 505, 676
TatI	WGTACW	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	1 cut(s)	335
Tru9I	TTAA	1 cut(s)	335
TscAI	CASTG	3 cut(s)	82, 258, 736
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	1 cut(s)	588
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	2 cut(s)	84, 407
TspGWI	ACGGA	2 cut(s)	200, 581
TspRI	CASTG	3 cut(s)	82, 258, 736
Tth111I	GACNNNGTC	1 cut(s)	719
XapI	RAATTY	3 cut(s)	8, 236, 505
XspI	CTAG	3 cut(s)	437, 500, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.