FvH4_7g08070

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0016914
Physical Location & Seq
Reverse (-)
7998818 .. 8000211
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08070.t1

Sequence Viewer

Length: 891 bp
ATGGCTGGGTTAGACTTGGGCTCAGCATCTCGCTTGTTCCATCAGCAGCTCCAACTCCCTGACCTTCACCTGCAGAGACAGCCGGAATCTGAAGATCATGACTCCAACCGCAACAATAACAACAACCTCTTCAACTCGGATCACCACCACCAAAACGACGTCGGCGATAATGACAGCAATCTCCACCAAGGGCTTGATCTTGTGACCCCAAACTCCGGAGGCTCTGGTGGAGATGGTACTACTCGGAGGTCCAGGGGTCGTCCTCCCGGGTCAAGAAACAAGCCCAAGCCGCCGGTGATCATTACCAGAGAGAGCGCCAACACCCTGAGAGCTCATATTCTTGAGGTCAGCAGCGGCTGCGATGTGTTTGACTGCGTTGGAACCTATGCCAGGAAACGGCAGCGTGGGATTTGCGTGCTGAGTGGGAGTGGGATGGTGACCAACGTGACCCTGCGCCAGCCAGCTGGGGCTGGCGCAGTTGTCACGCTACACGGCAGGTTCGAGATCCTGTCGTTGACCGGCTCGTTCCTGCCCCCGCCTGCCCCGCCGGGCGCCACCAGCCTGACGATATTCTTGGCAGGCGGTCAGGGCCAAGTCGTGGGTGGAAATGTTGTGGGACCTCTCATAGCATCTGGACCTGTGATCGTCATAGCTTCTTCTTTTACCAACGTTGCTTATGAGAGGTTGCCTTTGGAGGAGGAAGAGGAGCAGCTGCAGATTCAGCCGTCTCTGCCTCAGTCGTCCGGCGGTGGCGGAAGTGGAGGAGTAGGCAATACCAACCCATTTCCGGATCCGTCTTCGGGGCTTCCCTTCTTCAATCTTCCCCTGAATAACATGCCTCAGCTCCAAGATGGTTGGGCTGGAAACCCTACTGGGAGGCCATCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

297

Amino Acids

31.14

Weight (kDa)

5.96

Isoelectric Point (pI)

58.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 110 - 223 9.6e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016914)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g08070
malus_domestica MD02G1236500.v1.1 MD07G1083600.v1.1
prunus_persica Prupe.2G108200_v2.0.a1
pyrus_communis pycom02g19880
rosa_chinensis RchiOBHm_Chr1g0341251
rosa_laevigata RLG00000029075
rosa_multiflora Rmu_sc0004092.1_g000044
rosa_rugosa Rorug01G0158500.1
rosa_samantha Rh1AG172800 Rh1BG140900 Rh1CG160900 Rh1DG173100
rosa_wichuraiana Rw1G014420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
AatII GACGTC 1 cut(s) 162
Acc36I ACCTGC 2 cut(s) 78, 486
AccB1I GGYRCC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 598
AccIII TCCGGA 2 cut(s) 215, 787
AciI CCGC 8 cut(s) 109, 290, 354, 536, 545, 582, 747, 753
AclI AACGTT 1 cut(s) 669
AclWI GGATC 4 cut(s) 147, 499, 785, 798
AcuI CTGAAG 1 cut(s) 111
AcyI GRCGYC 2 cut(s) 159, 552
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 6 cut(s) 215, 390, 396, 598, 787, 800
AgsI TTSAA 2 cut(s) 133, 817
AjnI CCWGG 2 cut(s) 251, 389
AluBI AGCT 6 cut(s) 49, 332, 464, 653, 712, 844
AluI AGCT 6 cut(s) 49, 332, 464, 653, 712, 844
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 2 cut(s) 70, 732
AlwI GGATC 4 cut(s) 147, 499, 785, 798
AlwNI CAGNNNCTG 1 cut(s) 357
Ama87I CYCGRG 1 cut(s) 266
Aor13HI TCCGGA 2 cut(s) 215, 787
AoxI GGCC 2 cut(s) 589, 878
ApeKI GCWGC 6 cut(s) 46, 351, 357, 400, 709, 712
AspLEI GCGC 4 cut(s) 317, 456, 476, 554
AspS9I GGNCC 4 cut(s) 249, 589, 617, 635
AsuC2I CCSGG 3 cut(s) 267, 268, 549
AsuHPI GGTGA 4 cut(s) 59, 134, 307, 448
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 3 cut(s) 249, 617, 635
BamHI GGATCC 1 cut(s) 790
BanI GGYRCC 1 cut(s) 551
BanII GRGCYC 2 cut(s) 23, 334
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 1 cut(s) 334
BbvCI CCTCAGC 1 cut(s) 840
BbvI GCAGC 6 cut(s) 58, 344, 363, 412, 699, 721
BccI CCATC 5 cut(s) 48, 227, 427, 845, 889
BceAI ACGGC 3 cut(s) 413, 508, 709
BciT130I CCWGG 2 cut(s) 253, 391
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 3 cut(s) 267, 268, 549
BcoDI GTCTC 2 cut(s) 70, 732
BfmI CTRYAG 2 cut(s) 71, 713
BfoI RGCGCY 2 cut(s) 318, 555
BfuAI ACCTGC 2 cut(s) 78, 486
BisI GCNGC 8 cut(s) 47, 290, 352, 355, 358, 401, 710, 713
BlpI GCTNAGC 1 cut(s) 22
BlsI GCNGC 8 cut(s) 48, 291, 353, 356, 359, 402, 711, 714
Bme1390I CCNGG 5 cut(s) 253, 267, 268, 391, 549
Bme18I GGWCC 3 cut(s) 249, 617, 635
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 4 cut(s) 249, 589, 617, 635
BmiI GGNNCC 4 cut(s) 382, 553, 618, 792
BmrFI CCNGG 5 cut(s) 253, 267, 268, 391, 549
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 2 cut(s) 35, 638
BmuI ACTGGG 1 cut(s) 882
BpiI GAAGAC 1 cut(s) 789
Bpu10I CCTNAGC 1 cut(s) 840
Bpu1102I GCTNAGC 1 cut(s) 22
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 3 cut(s) 267, 268, 549
BsaHI GRCGYC 2 cut(s) 159, 552
BsaJI CCNNGG 3 cut(s) 187, 252, 266
BsaWI WCCGGW 2 cut(s) 215, 787
Bsc4I CCNNNNNNNGG 6 cut(s) 215, 390, 396, 598, 787, 800
Bse118I RCCGGY 2 cut(s) 292, 518
Bse1I ACTGG 1 cut(s) 877
BseAI TCCGGA 2 cut(s) 215, 787
BseBI CCWGG 2 cut(s) 253, 391
BseDI CCNNGG 3 cut(s) 187, 252, 266
BseGI GGATG 1 cut(s) 438
BseLI CCNNNNNNNGG 6 cut(s) 215, 390, 396, 598, 787, 800
BseMII CTCAG 5 cut(s) 36, 317, 410, 749, 854
BseNI ACTGG 1 cut(s) 877
BseRI GAGGAG 3 cut(s) 710, 719, 777
BseXI GCAGC 6 cut(s) 58, 344, 363, 412, 699, 721
BseYI CCCAGC 2 cut(s) 5, 464
BshFI GGCC 2 cut(s) 591, 880
BshNI GGYRCC 1 cut(s) 551
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 8 cut(s) 83, 216, 267, 293, 519, 548, 744, 788
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 6 cut(s) 215, 390, 396, 598, 787, 800
BsmAI GTCTC 2 cut(s) 70, 732
BsmBI CGTCTC 1 cut(s) 732
BsmFI GGGAC 1 cut(s) 630
BsnI GGCC 2 cut(s) 591, 880
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 23, 334
Bsp13I TCCGGA 2 cut(s) 215, 787
Bsp143I GATC 7 cut(s) 94, 139, 196, 297, 504, 642, 790
Bsp1720I GCTNAGC 1 cut(s) 22
BspACI CCGC 8 cut(s) 109, 290, 354, 536, 545, 582, 747, 753
BspANI GGCC 2 cut(s) 591, 880
BspCNI CTCAG 5 cut(s) 35, 318, 411, 748, 853
BspEI TCCGGA 2 cut(s) 215, 787
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 4 cut(s) 382, 553, 618, 792
BspMAI CTGCAG 2 cut(s) 75, 717
BspMI ACCTGC 2 cut(s) 78, 486
BspPI GGATC 4 cut(s) 147, 499, 785, 798
BspT107I GGYRCC 1 cut(s) 551
BsrFI RCCGGY 2 cut(s) 292, 518
BsrI ACTGG 1 cut(s) 877
BssAI RCCGGY 2 cut(s) 292, 518
BssECI CCNNGG 3 cut(s) 187, 252, 266
BssMI GATC 7 cut(s) 94, 139, 196, 297, 504, 642, 790
BssNI GRCGYC 2 cut(s) 159, 552
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 253, 391
Bst6I CTCTTC 2 cut(s) 134, 696
BstACI GRCGYC 2 cut(s) 159, 552
BstAPI GCANNNNNTGC 1 cut(s) 357
BstC8I GCNNGC 6 cut(s) 416, 458, 462, 472, 540, 580
BstDEI CTNAG 5 cut(s) 22, 326, 419, 735, 840
BstEII GGTNACC 1 cut(s) 436
BstENI CCTNNNNNAGG 1 cut(s) 388
BstF5I GGATG 1 cut(s) 438
BstH2I RGCGCY 2 cut(s) 318, 555
BstHHI GCGC 4 cut(s) 317, 456, 476, 554
BstKTI GATC 7 cut(s) 97, 142, 199, 300, 507, 645, 793
BstMAI GTCTC 2 cut(s) 70, 732
BstMBI GATC 7 cut(s) 94, 139, 196, 297, 504, 642, 790
BstMWI GCNNNNNNNGC 8 cut(s) 79, 289, 357, 544, 558, 588, 721, 730
BstNI CCWGG 2 cut(s) 253, 391
BstNSI RCATGY 1 cut(s) 838
BstPI GGTNACC 1 cut(s) 436
BstSCI CCNGG 5 cut(s) 251, 265, 266, 389, 547
BstSFI CTRYAG 2 cut(s) 71, 713
BstV1I GCAGC 6 cut(s) 58, 344, 363, 412, 699, 721
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 2 cut(s) 504, 790
BstXI CCANNNNNNTGG 1 cut(s) 464
BstYI RGATCY 2 cut(s) 504, 790
BsuRI GGCC 2 cut(s) 591, 880
BtgZI GCGATG 1 cut(s) 375
BtsCI GGATG 1 cut(s) 438
BveI ACCTGC 2 cut(s) 78, 486
Cac8I GCNNGC 6 cut(s) 416, 458, 462, 472, 540, 580
CaiI CAGNNNCTG 1 cut(s) 357
CciI TCATGA 1 cut(s) 97
CfoI GCGC 4 cut(s) 317, 456, 476, 554
Cfr10I RCCGGY 2 cut(s) 292, 518
Cfr13I GGNCC 4 cut(s) 249, 589, 617, 635
Cfr9I CCCGGG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 237
CviAII CATG 2 cut(s) 98, 835
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 5 cut(s) 22, 326, 419, 735, 840
DinI GGCGCC 1 cut(s) 553
DpnI GATC 7 cut(s) 96, 141, 198, 299, 506, 644, 792
DpnII GATC 7 cut(s) 94, 139, 196, 297, 504, 642, 790
Eam1104I CTCTTC 2 cut(s) 134, 696
EarI CTCTTC 2 cut(s) 134, 696
EciI GGCGGA 1 cut(s) 768
Ecl136II GAGCTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 23, 334
Eco47I GGWCC 3 cut(s) 249, 617, 635
Eco53kI GAGCTC 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 436
EcoICRI GAGCTC 1 cut(s) 332
EcoNI CCTNNNNNAGG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 617
EcoO65I GGTNACC 1 cut(s) 436
EcoRII CCWGG 2 cut(s) 251, 389
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 2 cut(s) 23, 334
EgeI GGCGCC 1 cut(s) 553
EheI GGCGCC 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 732
FaeI CATG 2 cut(s) 101, 838
FaiI YATR 8 cut(s) 99, 336, 387, 626, 650, 678, 836, 886
FaqI GGGAC 1 cut(s) 630
FatI CATG 2 cut(s) 97, 834
FauI CCCGC 2 cut(s) 543, 552
FbaI TGATCA 1 cut(s) 297
Fnu4HI GCNGC 8 cut(s) 47, 290, 352, 355, 358, 401, 710, 713
FokI GGATG 1 cut(s) 445
FriOI GRGCYC 2 cut(s) 23, 334
Fsp4HI GCNGC 8 cut(s) 47, 290, 352, 355, 358, 401, 710, 713
GlaI GCGC 4 cut(s) 316, 455, 475, 553
GluI GCNGC 8 cut(s) 47, 290, 352, 355, 358, 401, 710, 713
GsaI CCCAGC 2 cut(s) 9, 468
HaeII RGCGCY 2 cut(s) 318, 555
HaeIII GGCC 2 cut(s) 591, 880
HapII CCGG 8 cut(s) 83, 216, 267, 293, 519, 548, 744, 788
HhaI GCGC 4 cut(s) 317, 456, 476, 554
Hin1I GRCGYC 2 cut(s) 159, 552
Hin1II CATG 2 cut(s) 101, 838
Hin6I GCGC 4 cut(s) 315, 454, 474, 552
HinP1I GCGC 4 cut(s) 315, 454, 474, 552
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HinfI GANTC 3 cut(s) 86, 101, 718
HpaII CCGG 8 cut(s) 83, 216, 267, 293, 519, 548, 744, 788
HphI GGTGA 4 cut(s) 59, 134, 307, 448
Hpy166II GTNNAC 1 cut(s) 516
Hpy188I TCNGA 3 cut(s) 91, 139, 246
Hpy188III TCNNGA 7 cut(s) 98, 216, 273, 341, 502, 633, 788
Hpy8I GTNNAC 1 cut(s) 516
Hpy99I CGWCG 2 cut(s) 161, 164
HpyAV CCTTC 2 cut(s) 74, 820
HpyCH4IV ACGT 3 cut(s) 159, 444, 669
HpyCH4V TGCA 2 cut(s) 73, 715
HpyF10VI GCNNNNNNNGC 8 cut(s) 79, 289, 357, 544, 558, 588, 721, 730
HpyF3I CTNAG 5 cut(s) 22, 326, 419, 735, 840
HpySE526I ACGT 3 cut(s) 159, 444, 669
Hsp92I GRCGYC 2 cut(s) 159, 552
Hsp92II CATG 2 cut(s) 101, 838
HspAI GCGC 4 cut(s) 315, 454, 474, 552
KasI GGCGCC 1 cut(s) 551
Kpn2I TCCGGA 2 cut(s) 215, 787
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 7 cut(s) 94, 139, 196, 297, 504, 642, 790
LmnI GCTCC 3 cut(s) 54, 706, 849
Lsp1109I GCAGC 6 cut(s) 58, 344, 363, 412, 699, 721
LweI GCATC 2 cut(s) 35, 638
MaeII ACGT 3 cut(s) 159, 444, 669
MaeIII GTNAC 4 cut(s) 202, 436, 445, 481
MalI GATC 7 cut(s) 96, 141, 198, 299, 506, 644, 792
MboI GATC 7 cut(s) 94, 139, 196, 297, 504, 642, 790
MboII GAAGA 7 cut(s) 104, 121, 648, 713, 789, 805, 812
MflI RGATCY 2 cut(s) 504, 790
MhlI GDGCHC 2 cut(s) 23, 334
Mly113I GGCGCC 1 cut(s) 552
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 3 cut(s) 76, 129, 358
MroI TCCGGA 2 cut(s) 215, 787
MspA1I CMGCKG 3 cut(s) 354, 464, 712
MspI CCGG 8 cut(s) 83, 216, 267, 293, 519, 548, 744, 788
MspR9I CCNGG 5 cut(s) 253, 267, 268, 391, 549
MvaI CCWGG 2 cut(s) 253, 391
MwoI GCNNNNNNNGC 8 cut(s) 79, 289, 357, 544, 558, 588, 721, 730
NarI GGCGCC 1 cut(s) 552
NciI CCSGG 3 cut(s) 267, 268, 549
NdeII GATC 7 cut(s) 94, 139, 196, 297, 504, 642, 790
NlaIII CATG 2 cut(s) 101, 838
NlaIV GGNNCC 4 cut(s) 382, 553, 618, 792
NmuCI GTSAC 4 cut(s) 202, 436, 445, 481
NspI RCATGY 1 cut(s) 838
PagI TCATGA 1 cut(s) 97
PaqCI CACCTGC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 498
PfeI GAWTC 2 cut(s) 86, 718
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 8 cut(s) 48, 291, 353, 356, 359, 402, 711, 714
PleI GAGTC 1 cut(s) 95
PluTI GGCGCC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 617
Psp124BI GAGCTC 1 cut(s) 334
Psp1406I AACGTT 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 617
Psp6I CCWGG 2 cut(s) 251, 389
PspEI GGTNACC 1 cut(s) 436
PspFI CCCAGC 2 cut(s) 5, 464
PspGI CCWGG 2 cut(s) 251, 389
PspN4I GGNNCC 4 cut(s) 382, 553, 618, 792
PspPI GGNCC 4 cut(s) 249, 589, 617, 635
PspPPI RGGWCCY 1 cut(s) 617
PstI CTGCAG 2 cut(s) 75, 717
PstNI CAGNNNCTG 1 cut(s) 357
PsuI RGATCY 2 cut(s) 504, 790
PvuII CAGCTG 2 cut(s) 464, 712
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SacI GAGCTC 1 cut(s) 334
SatI GCNGC 8 cut(s) 47, 290, 352, 355, 358, 401, 710, 713
Sau3AI GATC 7 cut(s) 94, 139, 196, 297, 504, 642, 790
Sau96I GGNCC 4 cut(s) 249, 589, 617, 635
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 5 cut(s) 253, 267, 268, 391, 549
SduI GDGCHC 2 cut(s) 23, 334
SfaNI GCATC 2 cut(s) 35, 638
SfcI CTRYAG 2 cut(s) 71, 713
SfoI GGCGCC 1 cut(s) 553
SgrAI CRCCGGYG 1 cut(s) 292
SinI GGWCC 3 cut(s) 249, 617, 635
SmaI CCCGGG 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SsiI CCGC 8 cut(s) 109, 290, 354, 536, 545, 582, 747, 753
SspDI GGCGCC 1 cut(s) 551
SstI GAGCTC 1 cut(s) 334
StyD4I CCNGG 5 cut(s) 251, 265, 266, 389, 547
StyI CCWWGG 1 cut(s) 187
TaiI ACGT 3 cut(s) 162, 447, 672
TaqI TCGA 1 cut(s) 501
TauI GCSGC 2 cut(s) 292, 357
TfiI GAWTC 2 cut(s) 86, 718
TseFI GTSAC 4 cut(s) 202, 436, 445, 481
TseI GCWGC 6 cut(s) 46, 351, 357, 400, 709, 712
Tsp45I GTSAC 4 cut(s) 202, 436, 445, 481
TspGWI ACGGA 1 cut(s) 783
TspMI CCCGGG 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 598
VpaK11BI GGWCC 3 cut(s) 249, 617, 635
XagI CCTNNNNNAGG 1 cut(s) 388
XceI RCATGY 1 cut(s) 838
XcmI CCANNNNNNNNNTGG 1 cut(s) 599
XmaI CCCGGG 1 cut(s) 266
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.